data_YNJ # _chem_comp.id YNJ _chem_comp.name "7-{[(2S)-2-butyl-6,7-dichloro-2-cyclopentyl-1-oxo-2,3-dihydro-1H-inden-5-yl]oxy}heptanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H34 Cl2 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-03-15 _chem_comp.pdbx_modified_date 2021-03-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 469.441 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YNJ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7M19 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YNJ C11 C1 C 0 1 Y N N 206.902 203.828 272.101 2.144 -2.037 0.329 C11 YNJ 1 YNJ C12 C2 C 0 1 Y N N 206.386 203.099 273.169 2.556 -0.704 0.150 C12 YNJ 2 YNJ C13 C3 C 0 1 N N N 206.745 202.966 274.588 3.909 -0.138 0.082 C13 YNJ 3 YNJ C18 C4 C 0 1 N N N 203.604 203.843 269.092 -2.384 -0.551 0.103 C18 YNJ 4 YNJ C19 C5 C 0 1 N N N 203.373 203.926 267.558 -3.818 -1.083 0.160 C19 YNJ 5 YNJ C20 C6 C 0 1 N N N 203.956 205.215 266.937 -4.800 0.080 0.004 C20 YNJ 6 YNJ C21 C7 C 0 1 N N N 204.825 204.923 265.683 -6.233 -0.452 0.060 C21 YNJ 7 YNJ C22 C8 C 0 1 N N N 204.190 205.517 264.404 -7.215 0.711 -0.096 C22 YNJ 8 YNJ C23 C9 C 0 1 N N N 205.217 205.809 263.308 -8.649 0.180 -0.039 C23 YNJ 9 YNJ C24 C10 C 0 1 N N N 206.365 204.777 263.270 -9.616 1.325 -0.193 C24 YNJ 10 YNJ C29 C11 C 0 1 N N N 208.966 199.978 276.231 4.284 4.129 2.397 C29 YNJ 11 YNJ C01 C12 C 0 1 N N N 204.604 206.830 276.602 3.752 0.708 -5.076 C01 YNJ 12 YNJ C02 C13 C 0 1 N N N 204.639 205.391 277.144 4.428 1.442 -3.917 C02 YNJ 13 YNJ C03 C14 C 0 1 N N N 204.676 204.339 276.021 3.769 1.031 -2.599 C03 YNJ 14 YNJ C04 C15 C 0 1 N N N 205.230 202.980 276.518 4.445 1.765 -1.439 C04 YNJ 15 YNJ C05 C16 C 0 1 N N S 205.944 202.135 275.412 3.786 1.353 -0.121 C05 YNJ 16 YNJ C06 C17 C 0 1 N N N 204.897 201.550 274.445 2.278 1.633 -0.168 C06 YNJ 17 YNJ C07 C18 C 0 1 Y N N 205.237 202.258 272.965 1.594 0.299 0.009 C07 YNJ 18 YNJ C08 C19 C 0 1 Y N N 204.651 202.171 271.713 0.262 -0.018 0.044 C08 YNJ 19 YNJ C09 C20 C 0 1 Y N N 205.177 202.905 270.638 -0.145 -1.335 0.221 C09 YNJ 20 YNJ C10 C21 C 0 1 Y N N 206.308 203.738 270.836 0.802 -2.345 0.358 C10 YNJ 21 YNJ C27 C22 C 0 1 N N N 206.732 200.943 276.072 4.428 2.102 1.048 C27 YNJ 22 YNJ C28 C23 C 0 1 N N N 207.686 200.391 275.256 4.148 3.622 0.947 C28 YNJ 23 YNJ C30 C24 C 0 1 N N N 208.990 200.880 277.248 4.030 2.919 3.312 C30 YNJ 24 YNJ C31 C25 C 0 1 N N N 207.478 201.360 277.422 3.748 1.718 2.386 C31 YNJ 25 YNJ O14 O1 O 0 1 N N N 207.667 203.569 275.024 4.947 -0.760 0.172 O14 YNJ 26 YNJ O17 O2 O 0 1 N N N 204.572 202.818 269.344 -1.467 -1.637 0.250 O17 YNJ 27 YNJ O25 O3 O 0 1 N N N 207.522 205.112 263.645 -10.938 1.094 -0.174 O25 YNJ 28 YNJ O26 O4 O 0 1 N N N 206.146 203.603 262.865 -9.201 2.451 -0.334 O26 YNJ 29 YNJ CL15 CL1 CL 0 0 N N N 208.322 204.885 272.316 3.327 -3.296 0.506 CL15 YNJ 30 YNJ CL16 CL2 CL 0 0 N N N 206.982 204.678 269.478 0.291 -3.989 0.579 CL16 YNJ 31 YNJ H1 H1 H 0 1 N N N 203.978 204.808 269.465 -2.217 -0.060 -0.855 H1 YNJ 32 YNJ H2 H2 H 0 1 N N N 202.659 203.595 269.598 -2.230 0.166 0.910 H2 YNJ 33 YNJ H3 H3 H 0 1 N N N 202.291 203.900 267.363 -3.972 -1.799 -0.647 H3 YNJ 34 YNJ H4 H4 H 0 1 N N N 203.853 203.058 267.082 -3.986 -1.573 1.119 H4 YNJ 35 YNJ H5 H5 H 0 1 N N N 204.579 205.720 267.690 -4.646 0.797 0.811 H5 YNJ 36 YNJ H6 H6 H 0 1 N N N 203.125 205.875 266.646 -4.632 0.571 -0.955 H6 YNJ 37 YNJ H7 H7 H 0 1 N N N 204.923 203.834 265.561 -6.387 -1.168 -0.746 H7 YNJ 38 YNJ H8 H8 H 0 1 N N N 205.821 205.367 265.827 -6.401 -0.942 1.019 H8 YNJ 39 YNJ H9 H9 H 0 1 N N N 203.682 206.456 264.668 -7.061 1.428 0.711 H9 YNJ 40 YNJ H10 H10 H 0 1 N N N 203.454 204.800 264.012 -7.047 1.202 -1.055 H10 YNJ 41 YNJ H11 H11 H 0 1 N N N 205.647 206.806 263.486 -8.802 -0.537 -0.846 H11 YNJ 42 YNJ H12 H12 H 0 1 N N N 204.704 205.800 262.335 -8.816 -0.311 0.920 H12 YNJ 43 YNJ H13 H13 H 0 1 N N N 208.827 198.962 276.629 5.289 4.519 2.563 H13 YNJ 44 YNJ H14 H14 H 0 1 N N N 209.906 200.023 275.662 3.546 4.907 2.592 H14 YNJ 45 YNJ H15 H15 H 0 1 N N N 204.578 207.539 277.443 3.859 -0.368 -4.937 H15 YNJ 46 YNJ H16 H16 H 0 1 N N N 205.502 207.015 275.994 2.693 0.967 -5.103 H16 YNJ 47 YNJ H17 H17 H 0 1 N N N 203.706 206.966 275.981 4.221 1.001 -6.015 H17 YNJ 48 YNJ H18 H18 H 0 1 N N N 203.740 205.223 277.756 5.486 1.183 -3.890 H18 YNJ 49 YNJ H19 H19 H 0 1 N N N 205.536 205.271 277.769 4.320 2.518 -4.056 H19 YNJ 50 YNJ H20 H20 H 0 1 N N N 205.319 204.709 275.209 2.710 1.290 -2.625 H20 YNJ 51 YNJ H21 H21 H 0 1 N N N 203.655 204.189 275.641 3.876 -0.045 -2.460 H21 YNJ 52 YNJ H22 H22 H 0 1 N N N 204.391 202.390 276.915 5.503 1.506 -1.413 H22 YNJ 53 YNJ H23 H23 H 0 1 N N N 205.954 203.176 277.323 4.338 2.841 -1.579 H23 YNJ 54 YNJ H24 H24 H 0 1 N N N 203.879 201.808 274.773 1.997 2.308 0.640 H24 YNJ 55 YNJ H25 H25 H 0 1 N N N 204.996 200.456 274.383 2.007 2.069 -1.130 H25 YNJ 56 YNJ H26 H26 H 0 1 N N N 203.789 201.538 271.564 -0.477 0.762 -0.065 H26 YNJ 57 YNJ H27 H27 H 0 1 N N N 205.990 200.178 276.343 5.499 1.906 1.089 H27 YNJ 58 YNJ H28 H28 H 0 1 N N N 207.286 199.497 274.756 3.140 3.800 0.573 H28 YNJ 59 YNJ H29 H29 H 0 1 N N N 208.006 201.122 274.499 4.885 4.103 0.303 H29 YNJ 60 YNJ H30 H30 H 0 1 N N N 209.353 200.408 278.173 4.911 2.721 3.923 H30 YNJ 61 YNJ H31 H31 H 0 1 N N N 209.637 201.732 276.992 3.167 3.108 3.951 H31 YNJ 62 YNJ H32 H32 H 0 1 N N N 207.436 202.450 277.562 2.675 1.588 2.245 H32 YNJ 63 YNJ H33 H33 H 0 1 N N N 207.015 200.861 278.286 4.193 0.810 2.793 H33 YNJ 64 YNJ H34 H34 H 0 1 N N N 208.110 204.370 263.561 -11.519 1.860 -0.277 H34 YNJ 65 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YNJ O26 C24 DOUB N N 1 YNJ C24 C23 SING N N 2 YNJ C24 O25 SING N N 3 YNJ C23 C22 SING N N 4 YNJ C22 C21 SING N N 5 YNJ C21 C20 SING N N 6 YNJ C20 C19 SING N N 7 YNJ C19 C18 SING N N 8 YNJ C18 O17 SING N N 9 YNJ O17 C09 SING N N 10 YNJ CL16 C10 SING N N 11 YNJ C09 C10 DOUB Y N 12 YNJ C09 C08 SING Y N 13 YNJ C10 C11 SING Y N 14 YNJ C08 C07 DOUB Y N 15 YNJ C11 CL15 SING N N 16 YNJ C11 C12 DOUB Y N 17 YNJ C07 C12 SING Y N 18 YNJ C07 C06 SING N N 19 YNJ C12 C13 SING N N 20 YNJ C06 C05 SING N N 21 YNJ C13 O14 DOUB N N 22 YNJ C13 C05 SING N N 23 YNJ C28 C27 SING N N 24 YNJ C28 C29 SING N N 25 YNJ C05 C27 SING N N 26 YNJ C05 C04 SING N N 27 YNJ C03 C04 SING N N 28 YNJ C03 C02 SING N N 29 YNJ C27 C31 SING N N 30 YNJ C29 C30 SING N N 31 YNJ C01 C02 SING N N 32 YNJ C30 C31 SING N N 33 YNJ C18 H1 SING N N 34 YNJ C18 H2 SING N N 35 YNJ C19 H3 SING N N 36 YNJ C19 H4 SING N N 37 YNJ C20 H5 SING N N 38 YNJ C20 H6 SING N N 39 YNJ C21 H7 SING N N 40 YNJ C21 H8 SING N N 41 YNJ C22 H9 SING N N 42 YNJ C22 H10 SING N N 43 YNJ C23 H11 SING N N 44 YNJ C23 H12 SING N N 45 YNJ C29 H13 SING N N 46 YNJ C29 H14 SING N N 47 YNJ C01 H15 SING N N 48 YNJ C01 H16 SING N N 49 YNJ C01 H17 SING N N 50 YNJ C02 H18 SING N N 51 YNJ C02 H19 SING N N 52 YNJ C03 H20 SING N N 53 YNJ C03 H21 SING N N 54 YNJ C04 H22 SING N N 55 YNJ C04 H23 SING N N 56 YNJ C06 H24 SING N N 57 YNJ C06 H25 SING N N 58 YNJ C08 H26 SING N N 59 YNJ C27 H27 SING N N 60 YNJ C28 H28 SING N N 61 YNJ C28 H29 SING N N 62 YNJ C30 H30 SING N N 63 YNJ C30 H31 SING N N 64 YNJ C31 H32 SING N N 65 YNJ C31 H33 SING N N 66 YNJ O25 H34 SING N N 67 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YNJ SMILES ACDLabs 12.01 "O=C(O)CCCCCCOc1cc2CC(CCCC)(C(=O)c2c(Cl)c1Cl)C1CCCC1" YNJ InChI InChI 1.03 "InChI=1S/C25H34Cl2O4/c1-2-3-13-25(18-10-7-8-11-18)16-17-15-19(22(26)23(27)21(17)24(25)30)31-14-9-5-4-6-12-20(28)29/h15,18H,2-14,16H2,1H3,(H,28,29)/t25-/m0/s1" YNJ InChIKey InChI 1.03 FIDRMVPJOHBYQH-VWLOTQADSA-N YNJ SMILES_CANONICAL CACTVS 3.385 "CCCC[C@]1(Cc2cc(OCCCCCCC(O)=O)c(Cl)c(Cl)c2C1=O)C3CCCC3" YNJ SMILES CACTVS 3.385 "CCCC[C]1(Cc2cc(OCCCCCCC(O)=O)c(Cl)c(Cl)c2C1=O)C3CCCC3" YNJ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCC[C@]1(Cc2cc(c(c(c2C1=O)Cl)Cl)OCCCCCCC(=O)O)C3CCCC3" YNJ SMILES "OpenEye OEToolkits" 2.0.7 "CCCCC1(Cc2cc(c(c(c2C1=O)Cl)Cl)OCCCCCCC(=O)O)C3CCCC3" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YNJ "SYSTEMATIC NAME" ACDLabs 12.01 "7-{[(2S)-2-butyl-6,7-dichloro-2-cyclopentyl-1-oxo-2,3-dihydro-1H-inden-5-yl]oxy}heptanoic acid" YNJ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "7-[[(2~{S})-2-butyl-6,7-bis(chloranyl)-2-cyclopentyl-1-oxidanylidene-3~{H}-inden-5-yl]oxy]heptanoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YNJ "Create component" 2021-03-15 RCSB YNJ "Initial release" 2021-03-24 RCSB ##