data_YNO # _chem_comp.id YNO _chem_comp.name "5-bromanyl-3-[(2~{R},3~{R},4~{S},5~{R},6~{R})-4-[4-(4-chloranyl-1,3-thiazol-2-yl)-1,2,3-triazol-1-yl]-6-(hydroxymethyl)-3-methoxy-5-oxidanyl-oxan-2-yl]sulfanyl-pyridine-2-carbonitrile" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H16 Br Cl N6 O4 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-12-07 _chem_comp.pdbx_modified_date 2024-12-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 559.844 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YNO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8RDC _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YNO C15 C1 C 0 1 Y N N N N N 7.769 -23.456 -14.695 1.804 -1.834 -0.461 C15 YNO 1 YNO C14 C2 C 0 1 Y N N N N N 5.419 -23.154 -15.746 3.727 -0.177 -0.676 C14 YNO 2 YNO C13 C3 C 0 1 Y N N N N N 6.866 -22.977 -15.611 2.824 -1.089 0.061 C13 YNO 3 YNO C7 C4 C 0 1 N N R N N N 12.016 -24.620 -13.446 -1.401 -1.589 -0.220 C7 YNO 4 YNO C6 C5 C 0 1 N N R N N N 10.648 -24.543 -14.131 -0.840 -2.964 -0.592 C6 YNO 5 YNO C5 C6 C 0 1 N N S N N N 10.273 -23.104 -14.442 0.125 -3.427 0.503 C5 YNO 6 YNO C3 C7 C 0 1 N N R N N N 11.691 -22.393 -12.551 -1.182 -2.050 2.123 C3 YNO 7 YNO C4 C8 C 0 1 N N R N N N 10.295 -22.288 -13.154 -0.613 -3.443 1.845 C4 YNO 8 YNO C2 C9 C 0 1 N N N N N N 11.836 -21.647 -11.254 -0.036 -1.043 2.237 C2 YNO 9 YNO O1 O1 O 0 1 N N N N N N 13.208 -21.684 -10.844 -0.552 0.222 2.654 O1 YNO 10 YNO O8 O2 O 0 1 N N N N N N 12.036 -23.774 -12.287 -2.047 -1.668 1.052 O8 YNO 11 YNO S9 S1 S 0 1 N N N N N N 13.331 -24.202 -14.661 -2.599 -1.064 -1.477 S9 YNO 12 YNO N10 N1 N 0 1 Y N N N N N 8.966 -23.019 -15.120 1.259 -2.502 0.579 N10 YNO 13 YNO N11 N2 N 0 1 Y N N N N N 8.840 -22.307 -16.257 1.904 -2.190 1.648 N11 YNO 14 YNO N12 N3 N 0 1 Y N N N N N 7.555 -22.266 -16.547 2.842 -1.352 1.381 N12 YNO 15 YNO O16 O3 O 0 1 N N N N N N 9.342 -22.779 -12.232 0.297 -3.804 2.886 O16 YNO 16 YNO O17 O4 O 0 1 N N N N N N 10.684 -25.204 -15.390 -1.913 -3.901 -0.712 O17 YNO 17 YNO N18 N4 N 0 1 Y N N N N N 4.670 -23.832 -14.928 4.692 0.521 -0.148 N18 YNO 18 YNO C19 C10 C 0 1 Y N N N N N 3.369 -23.748 -15.327 5.393 1.279 -0.961 C19 YNO 19 YNO C20 C11 C 0 1 Y N N N N N 3.103 -23.026 -16.448 5.030 1.246 -2.247 C20 YNO 20 YNO S21 S2 S 0 1 Y N N N N N 4.563 -22.401 -17.061 3.673 0.134 -2.409 S21 YNO 21 YNO C22 C12 C 0 1 Y N N N N N 14.730 -24.317 -13.573 -2.905 0.619 -1.054 C22 YNO 22 YNO C23 C13 C 0 1 Y N N N N N 15.317 -25.560 -13.179 -3.799 1.393 -1.809 C23 YNO 23 YNO N24 N5 N 0 1 Y N N N N N 16.417 -25.702 -12.413 -4.027 2.663 -1.487 N24 YNO 24 YNO C25 C14 C 0 1 Y N N N N N 16.938 -24.580 -11.902 -3.432 3.234 -0.464 C25 YNO 25 YNO C26 C15 C 0 1 Y N N N N N 16.428 -23.345 -12.191 -2.534 2.530 0.328 C26 YNO 26 YNO C27 C16 C 0 1 Y N N N N N 15.352 -23.188 -13.044 -2.266 1.203 0.039 C27 YNO 27 YNO BR28 BR1 BR 0 0 N N N N N N 17.193 -21.805 -11.379 -1.690 3.376 1.793 BR28 YNO 28 YNO CL29 CL1 CL 0 0 N N N N N N 2.202 -24.544 -14.346 6.708 2.264 -0.398 CL29 YNO 29 YNO C30 C17 C 0 1 N N N N N N 10.830 -26.617 -15.310 -2.466 -3.986 -2.027 C30 YNO 30 YNO C31 C18 C 0 1 N N N N N N 14.645 -26.785 -13.550 -4.470 0.812 -2.932 C31 YNO 31 YNO N32 N6 N 0 1 N N N N N N 14.118 -27.772 -13.795 -5.003 0.351 -3.824 N32 YNO 32 YNO H1 H1 H 0 1 N N N N N N 7.562 -24.055 -13.821 1.493 -1.876 -1.495 H1 YNO 33 YNO H2 H2 H 0 1 N N N N N N 12.206 -25.663 -13.154 -0.587 -0.866 -0.170 H2 YNO 34 YNO H3 H3 H 0 1 N N N N N N 9.886 -24.988 -13.475 -0.308 -2.896 -1.541 H3 YNO 35 YNO H4 H4 H 0 1 N N N N N N 11.041 -22.693 -15.114 0.485 -4.429 0.273 H4 YNO 36 YNO H5 H5 H 0 1 N N N N N N 12.408 -21.975 -13.273 -1.745 -2.066 3.056 H5 YNO 37 YNO H6 H6 H 0 1 N N N N N N 10.089 -21.235 -13.396 -1.426 -4.168 1.804 H6 YNO 38 YNO H7 H7 H 0 1 N N N N N N 11.521 -20.602 -11.393 0.689 -1.399 2.969 H7 YNO 39 YNO H8 H8 H 0 1 N N N N N N 11.209 -22.120 -10.484 0.451 -0.936 1.267 H8 YNO 40 YNO H9 H9 H 0 1 N N N N N N 13.307 -21.214 -10.024 0.121 0.910 2.747 H9 YNO 41 YNO H10 H10 H 0 1 N N N N N N 9.371 -22.258 -11.438 -0.104 -3.834 3.766 H10 YNO 42 YNO H11 H11 H 0 1 N N N N N N 2.125 -22.874 -16.879 5.492 1.803 -3.049 H11 YNO 43 YNO H12 H12 H 0 1 N N N N N N 17.788 -24.653 -11.240 -3.644 4.267 -0.236 H12 YNO 44 YNO H13 H13 H 0 1 N N N N N N 14.997 -22.200 -13.298 -1.575 0.635 0.644 H13 YNO 45 YNO H14 H14 H 0 1 N N N N N N 10.848 -27.042 -16.324 -3.273 -4.718 -2.034 H14 YNO 46 YNO H15 H15 H 0 1 N N N N N N 11.771 -26.860 -14.794 -2.855 -3.012 -2.322 H15 YNO 47 YNO H16 H16 H 0 1 N N N N N N 9.984 -27.042 -14.749 -1.690 -4.295 -2.728 H16 YNO 48 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YNO S21 C20 SING Y N 1 YNO S21 C14 SING Y N 2 YNO N12 N11 DOUB Y N 3 YNO N12 C13 SING Y N 4 YNO C20 C19 DOUB Y N 5 YNO N11 N10 SING Y N 6 YNO C14 C13 SING N N 7 YNO C14 N18 DOUB Y N 8 YNO C13 C15 DOUB Y N 9 YNO O17 C30 SING N N 10 YNO O17 C6 SING N N 11 YNO C19 N18 SING Y N 12 YNO C19 CL29 SING N N 13 YNO N10 C15 SING Y N 14 YNO N10 C5 SING N N 15 YNO S9 C22 SING N N 16 YNO S9 C7 SING N N 17 YNO C5 C6 SING N N 18 YNO C5 C4 SING N N 19 YNO C6 C7 SING N N 20 YNO N32 C31 TRIP N N 21 YNO C22 C23 DOUB Y N 22 YNO C22 C27 SING Y N 23 YNO C31 C23 SING N N 24 YNO C7 O8 SING N N 25 YNO C23 N24 SING Y N 26 YNO C4 C3 SING N N 27 YNO C4 O16 SING N N 28 YNO C27 C26 DOUB Y N 29 YNO C3 O8 SING N N 30 YNO C3 C2 SING N N 31 YNO N24 C25 DOUB Y N 32 YNO C26 C25 SING Y N 33 YNO C26 BR28 SING N N 34 YNO C2 O1 SING N N 35 YNO C15 H1 SING N N 36 YNO C7 H2 SING N N 37 YNO C6 H3 SING N N 38 YNO C5 H4 SING N N 39 YNO C3 H5 SING N N 40 YNO C4 H6 SING N N 41 YNO C2 H7 SING N N 42 YNO C2 H8 SING N N 43 YNO O1 H9 SING N N 44 YNO O16 H10 SING N N 45 YNO C20 H11 SING N N 46 YNO C25 H12 SING N N 47 YNO C27 H13 SING N N 48 YNO C30 H14 SING N N 49 YNO C30 H15 SING N N 50 YNO C30 H16 SING N N 51 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YNO InChI InChI 1.06 "InChI=1S/C18H16BrClN6O4S2/c1-29-16-14(26-5-10(24-25-26)17-23-13(20)7-31-17)15(28)11(6-27)30-18(16)32-12-2-8(19)4-22-9(12)3-21/h2,4-5,7,11,14-16,18,27-28H,6H2,1H3/t11-,14+,15+,16-,18-/m1/s1" YNO InChIKey InChI 1.06 MZSZXCMHHUHYMW-PTERYMMESA-N YNO SMILES_CANONICAL CACTVS 3.385 "CO[C@H]1[C@H](O[C@H](CO)[C@H](O)[C@@H]1n2cc(nn2)c3scc(Cl)n3)Sc4cc(Br)cnc4C#N" YNO SMILES CACTVS 3.385 "CO[CH]1[CH](O[CH](CO)[CH](O)[CH]1n2cc(nn2)c3scc(Cl)n3)Sc4cc(Br)cnc4C#N" YNO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CO[C@@H]1[C@H]([C@H]([C@H](O[C@@H]1Sc2cc(cnc2C#N)Br)CO)O)n3cc(nn3)c4nc(cs4)Cl" YNO SMILES "OpenEye OEToolkits" 2.0.7 "COC1C(C(C(OC1Sc2cc(cnc2C#N)Br)CO)O)n3cc(nn3)c4nc(cs4)Cl" # _pdbx_chem_comp_identifier.comp_id YNO _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "5-bromanyl-3-[(2~{R},3~{R},4~{S},5~{R},6~{R})-4-[4-(4-chloranyl-1,3-thiazol-2-yl)-1,2,3-triazol-1-yl]-6-(hydroxymethyl)-3-methoxy-5-oxidanyl-oxan-2-yl]sulfanyl-pyridine-2-carbonitrile" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YNO "Create component" 2023-12-07 PDBE YNO "Initial release" 2024-12-18 RCSB #