data_YNQ
#
_chem_comp.id YNQ
_chem_comp.name "(2P)-2-{3-[(4R)-3-(trifluoromethyl)-5,6-dihydro[1,2,4]triazolo[4,3-a]pyrazine-7(8H)-carbonyl]phenyl}-1H-benzimidazole-4-carboxamide"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C21 H16 F3 N7 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2023-02-13
_chem_comp.pdbx_modified_date 2024-02-02
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 455.393
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code YNQ
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8FYZ
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
YNQ N1 N1 N 0 1 Y N N N N N 37.419 12.239 -4.571 -3.901 -0.125 0.116 N1 YNQ 1
YNQ C7 C1 C 0 1 Y N N N N N 34.366 12.830 -2.491 -7.318 -1.344 -0.752 C7 YNQ 2
YNQ C8 C2 C 0 1 Y N N N N N 38.792 10.570 -5.783 -2.201 1.679 0.087 C8 YNQ 3
YNQ N2 N2 N 0 1 Y N N N N N 36.797 10.100 -4.362 -4.547 1.732 -0.852 N2 YNQ 4
YNQ C9 C3 C 0 1 Y N N N N N 39.878 11.421 -5.975 -1.236 0.929 0.754 C9 YNQ 5
YNQ O1 O1 O 0 1 N N N N N N 43.169 11.646 -6.796 0.710 -0.117 2.570 O1 YNQ 6
YNQ C1 C4 C 0 1 Y N N N N N 35.511 13.194 -3.204 -6.038 -1.442 -0.213 C1 YNQ 7
YNQ C5 C5 C 0 1 Y N N N N N 34.735 10.482 -2.940 -6.883 0.912 -1.451 C5 YNQ 8
YNQ C6 C6 C 0 1 Y N N N N N 33.986 11.498 -2.362 -7.731 -0.176 -1.364 C6 YNQ 9
YNQ N3 N3 N 0 1 N N N N N N 41.798 13.226 -7.611 2.344 0.890 1.454 N3 YNQ 10
YNQ C4 C7 C 0 1 Y N N N N N 35.871 10.845 -3.652 -5.603 0.842 -0.923 C4 YNQ 11
YNQ C3 C8 C 0 1 Y N N N N N 37.690 10.979 -4.895 -3.526 1.091 -0.206 C3 YNQ 12
YNQ C2 C9 C 0 1 Y N N N N N 36.269 12.172 -3.792 -5.163 -0.337 -0.296 C2 YNQ 13
YNQ N4 N4 N 0 1 Y N N N N N 41.144 15.741 -8.595 4.490 -0.045 0.069 N4 YNQ 14
YNQ N N5 N 0 1 N N N N N N 37.158 14.943 -3.503 -6.439 -3.741 0.516 N YNQ 15
YNQ C C10 C 0 1 N N N N N N 35.879 14.639 -3.322 -5.600 -2.689 0.439 C YNQ 16
YNQ O O2 O 0 1 N N N N N N 34.999 15.504 -3.252 -4.481 -2.769 0.908 O YNQ 17
YNQ C10 C11 C 0 1 Y N N N N N 40.890 11.082 -6.869 0.009 1.490 1.026 C10 YNQ 18
YNQ C11 C12 C 0 1 Y N N N N N 40.813 9.879 -7.563 0.283 2.801 0.627 C11 YNQ 19
YNQ C12 C13 C 0 1 Y N N N N N 39.740 9.026 -7.366 -0.678 3.539 -0.034 C12 YNQ 20
YNQ C13 C14 C 0 1 Y N N N N N 38.734 9.368 -6.479 -1.917 2.990 -0.301 C13 YNQ 21
YNQ C14 C15 C 0 1 N N N N N N 42.044 12.007 -7.090 1.040 0.701 1.734 C14 YNQ 22
YNQ C15 C16 C 0 1 N N N N N N 41.584 13.418 -9.054 3.391 0.213 2.234 C15 YNQ 23
YNQ C16 C17 C 0 1 N N N N N N 41.912 14.844 -9.470 4.171 -0.737 1.317 C16 YNQ 24
YNQ C17 C18 C 0 1 Y N N N N N 41.027 15.540 -7.253 3.873 1.067 -0.387 C17 YNQ 25
YNQ C18 C19 C 0 1 Y N N N N N 40.402 16.873 -8.835 5.421 -0.362 -0.854 C18 YNQ 26
YNQ C19 C20 C 0 1 N N N N N N 40.185 17.512 -10.177 6.377 -1.526 -0.798 C19 YNQ 27
YNQ C20 C21 C 0 1 N N N N N N 41.736 14.360 -6.685 2.763 1.776 0.351 C20 YNQ 28
YNQ F F1 F 0 1 N N N N N N 41.327 17.703 -10.826 5.689 -2.708 -1.089 F YNQ 29
YNQ F1 F2 F 0 1 N N N N N N 39.596 18.694 -10.072 7.397 -1.336 -1.736 F1 YNQ 30
YNQ F2 F3 F 0 1 N N N N N N 39.413 16.771 -10.959 6.931 -1.613 0.484 F2 YNQ 31
YNQ N5 N6 N 0 1 Y N N N N N 40.282 16.466 -6.699 4.417 1.379 -1.522 N5 YNQ 32
YNQ N6 N7 N 0 1 Y N N N N N 39.875 17.331 -7.719 5.338 0.530 -1.806 N6 YNQ 33
YNQ H2 H2 H 0 1 N N N N N N 33.763 13.599 -2.030 -7.992 -2.186 -0.692 H2 YNQ 34
YNQ H3 H3 H 0 1 N N N N N N 36.808 9.105 -4.464 -4.532 2.638 -1.196 H3 YNQ 35
YNQ H4 H4 H 0 1 N N N N N N 39.935 12.350 -5.427 -1.453 -0.084 1.061 H4 YNQ 36
YNQ H5 H5 H 0 1 N N N N N N 34.445 9.447 -2.840 -7.219 1.819 -1.932 H5 YNQ 37
YNQ H6 H6 H 0 1 N N N N N N 33.095 11.251 -1.804 -8.726 -0.112 -1.779 H6 YNQ 38
YNQ H7 H7 H 0 1 N N N N N N 37.437 15.899 -3.588 -6.151 -4.561 0.946 H7 YNQ 39
YNQ H8 H8 H 0 1 N N N N N N 37.842 14.216 -3.555 -7.332 -3.677 0.142 H8 YNQ 40
YNQ H9 H9 H 0 1 N N N N N N 41.594 9.609 -8.259 1.249 3.236 0.833 H9 YNQ 41
YNQ H10 H10 H 0 1 N N N N N N 39.688 8.092 -7.906 -0.462 4.552 -0.340 H10 YNQ 42
YNQ H11 H11 H 0 1 N N N N N N 37.901 8.698 -6.327 -2.665 3.573 -0.819 H11 YNQ 43
YNQ H12 H12 H 0 1 N N N N N N 40.531 13.207 -9.292 4.071 0.955 2.651 H12 YNQ 44
YNQ H13 H13 H 0 1 N N N N N N 42.232 12.724 -9.609 2.932 -0.356 3.043 H13 YNQ 45
YNQ H14 H14 H 0 1 N N N N N N 42.989 15.033 -9.351 3.563 -1.616 1.101 H14 YNQ 46
YNQ H15 H15 H 0 1 N N N N N N 41.625 15.005 -10.520 5.094 -1.043 1.810 H15 YNQ 47
YNQ H16 H16 H 0 1 N N N N N N 41.209 14.040 -5.774 1.924 1.953 -0.322 H16 YNQ 48
YNQ H17 H17 H 0 1 N N N N N N 42.763 14.659 -6.428 3.127 2.722 0.751 H17 YNQ 49
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
YNQ F2 C19 SING N N 1
YNQ F C19 SING N N 2
YNQ C19 F1 SING N N 3
YNQ C19 C18 SING N N 4
YNQ C16 C15 SING N N 5
YNQ C16 N4 SING N N 6
YNQ C15 N3 SING N N 7
YNQ C18 N4 SING Y N 8
YNQ C18 N6 DOUB Y N 9
YNQ N4 C17 SING Y N 10
YNQ N6 N5 SING Y N 11
YNQ N3 C14 SING N N 12
YNQ N3 C20 SING N N 13
YNQ C11 C12 DOUB Y N 14
YNQ C11 C10 SING Y N 15
YNQ C12 C13 SING Y N 16
YNQ C17 N5 DOUB Y N 17
YNQ C17 C20 SING N N 18
YNQ C14 C10 SING N N 19
YNQ C14 O1 DOUB N N 20
YNQ C10 C9 DOUB Y N 21
YNQ C13 C8 DOUB Y N 22
YNQ C9 C8 SING Y N 23
YNQ C8 C3 SING N N 24
YNQ C3 N1 DOUB Y N 25
YNQ C3 N2 SING Y N 26
YNQ N1 C2 SING Y N 27
YNQ N2 C4 SING Y N 28
YNQ C2 C4 DOUB Y N 29
YNQ C2 C1 SING Y N 30
YNQ C4 C5 SING Y N 31
YNQ N C SING N N 32
YNQ C O DOUB N N 33
YNQ C C1 SING N N 34
YNQ C1 C7 DOUB Y N 35
YNQ C5 C6 DOUB Y N 36
YNQ C7 C6 SING Y N 37
YNQ C7 H2 SING N N 38
YNQ N2 H3 SING N N 39
YNQ C9 H4 SING N N 40
YNQ C5 H5 SING N N 41
YNQ C6 H6 SING N N 42
YNQ N H7 SING N N 43
YNQ N H8 SING N N 44
YNQ C11 H9 SING N N 45
YNQ C12 H10 SING N N 46
YNQ C13 H11 SING N N 47
YNQ C15 H12 SING N N 48
YNQ C15 H13 SING N N 49
YNQ C16 H14 SING N N 50
YNQ C16 H15 SING N N 51
YNQ C20 H16 SING N N 52
YNQ C20 H17 SING N N 53
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
YNQ SMILES ACDLabs 12.01 "NC(=O)c1cccc2[NH]c(nc12)c1cccc(c1)C(=O)N1Cc2nnc(n2CC1)C(F)(F)F"
YNQ InChI InChI 1.06 "InChI=1S/C21H16F3N7O2/c22-21(23,24)20-29-28-15-10-30(7-8-31(15)20)19(33)12-4-1-3-11(9-12)18-26-14-6-2-5-13(17(25)32)16(14)27-18/h1-6,9H,7-8,10H2,(H2,25,32)(H,26,27)"
YNQ InChIKey InChI 1.06 YRWQGHRMQBPXQI-UHFFFAOYSA-N
YNQ SMILES_CANONICAL CACTVS 3.385 "NC(=O)c1cccc2[nH]c(nc12)c3cccc(c3)C(=O)N4CCn5c(C4)nnc5C(F)(F)F"
YNQ SMILES CACTVS 3.385 "NC(=O)c1cccc2[nH]c(nc12)c3cccc(c3)C(=O)N4CCn5c(C4)nnc5C(F)(F)F"
YNQ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)C(=O)N2CCn3c(nnc3C(F)(F)F)C2)c4[nH]c5cccc(c5n4)C(=O)N"
YNQ SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)C(=O)N2CCn3c(nnc3C(F)(F)F)C2)c4[nH]c5cccc(c5n4)C(=O)N"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
YNQ "SYSTEMATIC NAME" ACDLabs 12.01 "(2P)-2-{3-[(4R)-3-(trifluoromethyl)-5,6-dihydro[1,2,4]triazolo[4,3-a]pyrazine-7(8H)-carbonyl]phenyl}-1H-benzimidazole-4-carboxamide"
YNQ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-[3-[[3-(trifluoromethyl)-6,8-dihydro-5~{H}-[1,2,4]triazolo[4,3-a]pyrazin-7-yl]carbonyl]phenyl]-1~{H}-benzimidazole-4-carboxamide"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
YNQ "Create component" 2023-02-13 RCSB
YNQ "Initial release" 2024-02-07 RCSB
#