data_YNT # _chem_comp.id YNT _chem_comp.name Radafaxine _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H18 Cl N O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(2~{S},3~{S})-2-(3-chlorophenyl)-3,5,5-trimethyl-morpholin-2-ol" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-12-07 _chem_comp.pdbx_modified_date 2024-11-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 255.741 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YNT _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8XB2 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YNT C10 C1 C 0 1 N N N N N N 130.968 137.861 139.911 4.865 -0.493 0.192 C10 YNT 1 YNT C13 C2 C 0 1 Y N N N N N 132.584 144.330 140.211 -1.830 -0.400 0.237 C13 YNT 2 YNT C15 C3 C 0 1 Y N N N N N 132.920 145.430 140.938 -3.098 0.097 -0.006 C15 YNT 3 YNT C17 C4 C 0 1 Y N N N N N 133.241 145.320 142.268 -3.266 1.431 -0.332 C17 YNT 4 YNT C05 C5 C 0 1 N N N N N N 131.588 139.129 140.441 3.453 0.021 -0.091 C05 YNT 5 YNT C06 C6 C 0 1 N N S N N N 133.365 140.890 140.070 1.259 -0.614 -0.890 C06 YNT 6 YNT C07 C7 C 0 1 N N S N N N 132.196 141.849 140.121 0.649 -0.106 0.420 C07 YNT 7 YNT C08 C8 C 0 1 N N N N N N 130.572 140.167 140.361 2.821 0.523 1.210 C08 YNT 8 YNT C09 C9 C 0 1 N N N N N N 131.997 138.925 141.875 3.520 1.168 -1.102 C09 YNT 9 YNT C11 C10 C 0 1 N N N N N N 134.361 141.355 139.123 0.423 -1.779 -1.426 C11 YNT 10 YNT C12 C11 C 0 1 Y N N N N N 132.582 143.120 140.846 -0.732 0.435 0.155 C12 YNT 11 YNT C14 C12 C 0 1 Y N N N N N 132.886 143.001 142.174 -0.901 1.768 -0.172 C14 YNT 12 YNT C16 C13 C 0 1 Y N N N N N 133.223 144.107 142.896 -2.168 2.266 -0.414 C16 YNT 13 YNT N04 N1 N 0 1 N N N N N N 132.838 139.515 139.577 2.634 -1.070 -0.640 N04 YNT 14 YNT O02 O1 O 0 1 N N N N N N 131.117 141.326 140.883 1.475 0.933 0.953 O02 YNT 15 YNT O03 O2 O 0 1 N N N N N N 131.696 142.165 138.880 0.568 -1.182 1.357 O03 YNT 16 YNT CL01 CL1 CL 0 0 N N N N N N 132.944 147.029 140.183 -4.477 -0.953 0.097 CL01 YNT 17 YNT H103 H1 H 0 0 N N N N N N 130.092 137.597 140.522 5.472 0.316 0.600 H103 YNT 18 YNT H102 H2 H 0 0 N N N N N N 130.654 138.015 138.868 4.817 -1.310 0.913 H102 YNT 19 YNT H101 H3 H 0 0 N N N N N N 131.705 137.046 139.956 5.314 -0.852 -0.734 H101 YNT 20 YNT H131 H4 H 0 0 N N N N N N 132.327 144.411 139.165 -1.698 -1.441 0.496 H131 YNT 21 YNT H171 H5 H 0 0 N N N N N N 133.511 146.205 142.826 -4.256 1.819 -0.522 H171 YNT 22 YNT H061 H6 H 0 0 N N N N N N 133.802 140.776 141.073 1.271 0.193 -1.623 H061 YNT 23 YNT H081 H7 H 0 0 N N N N N N 130.282 140.328 139.312 2.823 -0.279 1.948 H081 YNT 24 YNT H082 H8 H 0 0 N N N N N N 129.688 139.872 140.945 3.393 1.370 1.589 H082 YNT 25 YNT H093 H9 H 0 0 N N N N N N 131.115 138.655 142.474 3.968 0.809 -2.029 H093 YNT 26 YNT H091 H10 H 0 0 N N N N N N 132.741 138.117 141.933 2.513 1.533 -1.304 H091 YNT 27 YNT H092 H11 H 0 0 N N N N N N 132.435 139.855 142.267 4.126 1.977 -0.694 H092 YNT 28 YNT H112 H12 H 0 0 N N N N N N 134.751 142.330 139.450 -0.597 -1.440 -1.607 H112 YNT 29 YNT H111 H13 H 0 0 N N N N N N 135.185 140.629 139.072 0.858 -2.140 -2.358 H111 YNT 30 YNT H113 H14 H 0 0 N N N N N N 133.901 141.459 138.129 0.413 -2.586 -0.693 H113 YNT 31 YNT H141 H15 H 0 0 N N N N N N 132.859 142.032 142.650 -0.043 2.421 -0.236 H141 YNT 32 YNT H161 H16 H 0 0 N N N N N N 133.471 144.026 143.944 -2.299 3.307 -0.669 H161 YNT 33 YNT H1 H17 H 0 1 N N N N N N 132.577 139.578 138.614 2.643 -1.872 -0.027 H1 YNT 34 YNT H031 H19 H 0 0 N N N N N N 130.968 142.767 138.976 0.190 -0.931 2.211 H031 YNT 35 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YNT O03 C07 SING N N 1 YNT C11 C06 SING N N 2 YNT N04 C06 SING N N 3 YNT N04 C05 SING N N 4 YNT C10 C05 SING N N 5 YNT C06 C07 SING N N 6 YNT C07 C12 SING N N 7 YNT C07 O02 SING N N 8 YNT CL01 C15 SING N N 9 YNT C13 C12 DOUB Y N 10 YNT C13 C15 SING Y N 11 YNT C08 C05 SING N N 12 YNT C08 O02 SING N N 13 YNT C05 C09 SING N N 14 YNT C12 C14 SING Y N 15 YNT C15 C17 DOUB Y N 16 YNT C14 C16 DOUB Y N 17 YNT C17 C16 SING Y N 18 YNT C10 H103 SING N N 19 YNT C10 H102 SING N N 20 YNT C10 H101 SING N N 21 YNT C13 H131 SING N N 22 YNT C17 H171 SING N N 23 YNT C06 H061 SING N N 24 YNT C08 H081 SING N N 25 YNT C08 H082 SING N N 26 YNT C09 H093 SING N N 27 YNT C09 H091 SING N N 28 YNT C09 H092 SING N N 29 YNT C11 H112 SING N N 30 YNT C11 H111 SING N N 31 YNT C11 H113 SING N N 32 YNT C14 H141 SING N N 33 YNT C16 H161 SING N N 34 YNT N04 H1 SING N N 35 YNT O03 H031 SING N N 36 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YNT InChI InChI 1.06 "InChI=1S/C13H18ClNO2/c1-9-13(16,17-8-12(2,3)15-9)10-5-4-6-11(14)7-10/h4-7,9,15-16H,8H2,1-3H3/t9-,13+/m0/s1" YNT InChIKey InChI 1.06 RCOBKSKAZMVBHT-TVQRCGJNSA-N YNT SMILES_CANONICAL CACTVS 3.385 "C[C@@H]1NC(C)(C)CO[C@@]1(O)c2cccc(Cl)c2" YNT SMILES CACTVS 3.385 "C[CH]1NC(C)(C)CO[C]1(O)c2cccc(Cl)c2" YNT SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]1[C@@](OCC(N1)(C)C)(c2cccc(c2)Cl)O" YNT SMILES "OpenEye OEToolkits" 2.0.7 "CC1C(OCC(N1)(C)C)(c2cccc(c2)Cl)O" # _pdbx_chem_comp_identifier.comp_id YNT _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S},3~{S})-2-(3-chlorophenyl)-3,5,5-trimethyl-morpholin-2-ol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YNT "Create component" 2023-12-07 PDBJ YNT "Modify coordinates" 2024-05-19 PDBJ YNT "Initial release" 2024-07-10 RCSB YNT "Modify synonyms" 2024-11-11 PDBJ # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id YNT _pdbx_chem_comp_synonyms.name "(2~{S},3~{S})-2-(3-chlorophenyl)-3,5,5-trimethyl-morpholin-2-ol" _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? #