data_YNW # _chem_comp.id YNW _chem_comp.name "(6M)-2-(benzylamino)-6-(2-chloro-4-methylphenyl)-1H-benzimidazole-4-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H18 Cl N3 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-02-13 _chem_comp.pdbx_modified_date 2024-02-16 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 391.850 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YNW _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7FU7 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YNW C10 C1 C 0 1 Y N N N N N -14.604 15.501 -16.723 -6.324 1.293 -0.575 C10 YNW 1 YNW C11 C2 C 0 1 N N N N N N -13.412 15.622 -17.642 -7.721 1.842 -0.707 C11 YNW 2 YNW C13 C3 C 0 1 Y N N N N N -16.862 14.795 -16.303 -4.144 1.396 0.413 C13 YNW 3 YNW C15 C4 C 0 1 Y N N N N N -19.026 16.055 -14.174 -1.286 0.596 -0.326 C15 YNW 4 YNW C16 C5 C 0 1 Y N N N N N -20.136 15.905 -13.353 -0.002 0.099 -0.207 C16 YNW 5 YNW C18 C6 C 0 1 Y N N N N N -22.072 16.051 -12.324 2.165 -0.327 -0.076 C18 YNW 6 YNW C20 C7 C 0 1 Y N N N N N -20.272 14.870 -12.421 0.207 -1.271 0.031 C20 YNW 7 YNW C22 C8 C 0 1 N N N N N N -23.869 17.672 -12.666 4.115 1.162 -0.277 C22 YNW 8 YNW C23 C9 C 0 1 Y N N N N N -25.352 17.781 -12.413 5.618 1.065 -0.220 C23 YNW 9 YNW C24 C10 C 0 1 Y N N N N N -26.268 17.337 -13.361 6.339 0.820 -1.373 C24 YNW 10 YNW C25 C11 C 0 1 Y N N N N N -27.632 17.391 -13.108 7.718 0.732 -1.320 C25 YNW 11 YNW C26 C12 C 0 1 Y N N N N N -28.096 17.857 -11.888 8.375 0.888 -0.115 C26 YNW 12 YNW C27 C13 C 0 1 Y N N N N N -27.194 18.269 -10.924 7.654 1.134 1.039 C27 YNW 13 YNW C28 C14 C 0 1 Y N N N N N -25.829 18.213 -11.178 6.276 1.227 0.986 C28 YNW 14 YNW C12 C15 C 0 1 Y N N N N N -15.778 14.900 -17.157 -5.426 1.895 0.288 C12 YNW 15 YNW C2 C16 C 0 1 N N N N N N -19.274 12.865 -11.299 -0.703 -3.571 0.396 C2 YNW 16 YNW C4 C17 C 0 1 Y N N N N N -19.170 14.009 -12.269 -0.904 -2.134 0.147 C4 YNW 17 YNW C5 C18 C 0 1 Y N N N N N -18.051 14.132 -13.106 -2.192 -1.618 0.024 C5 YNW 18 YNW C6 C19 C 0 1 Y N N N N N -17.957 15.173 -14.036 -2.381 -0.258 -0.205 C6 YNW 19 YNW C7 C20 C 0 1 Y N N N N N -16.807 15.262 -14.975 -3.756 0.283 -0.334 C7 YNW 20 YNW C8 C21 C 0 1 Y N N N N N -15.621 15.861 -14.552 -4.668 -0.321 -1.197 C8 YNW 21 YNW C9 C22 C 0 1 Y N N N N N -14.547 15.982 -15.418 -5.946 0.186 -1.314 C9 YNW 22 YNW N17 N1 N 0 1 Y N N N N N -21.322 16.601 -13.306 1.259 0.674 -0.271 N17 YNW 23 YNW N19 N2 N 0 1 Y N N N N N -21.487 15.010 -11.754 1.538 -1.466 0.100 N19 YNW 24 YNW N21 N3 N 0 1 N N N N N N -23.280 16.519 -11.994 3.532 -0.166 -0.067 N21 YNW 25 YNW O1 O1 O 0 1 N N N N N N -18.279 12.011 -11.304 -1.768 -4.391 0.507 O1 YNW 26 YNW O3 O2 O 0 1 N N N N N N -20.261 12.724 -10.591 0.422 -4.018 0.502 O3 YNW 27 YNW CL14 CL1 CL 0 0 N N N N N N -18.309 14.049 -16.913 -3.018 2.152 1.495 CL14 YNW 28 YNW H34 H1 H 0 1 N N N N N N -12.776 14.731 -17.538 -7.743 2.593 -1.497 H34 YNW 29 YNW H35 H2 H 0 1 N N N N N N -13.758 15.705 -18.683 -8.407 1.033 -0.956 H35 YNW 30 YNW H33 H3 H 0 1 N N N N N N -12.833 16.519 -17.375 -8.023 2.298 0.236 H33 YNW 31 YNW H37 H4 H 0 1 N N N N N N -18.992 16.845 -14.910 -1.441 1.649 -0.509 H37 YNW 32 YNW H41 H5 H 0 1 N N N N N N -23.379 18.585 -12.298 3.765 1.840 0.502 H41 YNW 33 YNW H40 H6 H 0 1 N N N N N N -23.700 17.576 -13.749 3.812 1.541 -1.253 H40 YNW 34 YNW H42 H7 H 0 1 N N N N N N -25.914 16.946 -14.304 5.826 0.697 -2.315 H42 YNW 35 YNW H43 H8 H 0 1 N N N N N N -28.333 17.069 -13.864 8.281 0.539 -2.221 H43 YNW 36 YNW H44 H9 H 0 1 N N N N N N -29.157 17.898 -11.691 9.452 0.819 -0.073 H44 YNW 37 YNW H45 H10 H 0 1 N N N N N N -27.551 18.635 -9.973 8.167 1.257 1.981 H45 YNW 38 YNW H46 H11 H 0 1 N N N N N N -25.130 18.508 -10.409 5.713 1.423 1.886 H46 YNW 39 YNW H36 H12 H 0 1 N N N N N N -15.845 14.514 -18.163 -5.728 2.756 0.865 H36 YNW 40 YNW H30 H13 H 0 1 N N N N N N -17.250 13.412 -13.031 -3.045 -2.273 0.112 H30 YNW 41 YNW H31 H14 H 0 1 N N N N N N -15.539 16.233 -13.542 -4.374 -1.186 -1.774 H31 YNW 42 YNW H32 H15 H 0 1 N N N N N N -13.643 16.461 -15.072 -6.653 -0.282 -1.982 H32 YNW 43 YNW H38 H16 H 0 1 N N N N N N -21.581 17.371 -13.890 1.459 1.611 -0.425 H38 YNW 44 YNW H39 H18 H 0 1 N N N N N N -23.920 15.761 -12.124 4.110 -0.932 0.079 H39 YNW 45 YNW H29 H19 H 0 1 N N N N N N -18.461 11.308 -10.692 -1.586 -5.326 0.672 H29 YNW 46 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YNW O1 C2 SING N N 1 YNW C2 O3 DOUB N N 2 YNW C2 C4 SING N N 3 YNW C4 C5 DOUB Y N 4 YNW C4 C20 SING Y N 5 YNW C5 C6 SING Y N 6 YNW C6 C7 SING N N 7 YNW C6 C15 DOUB Y N 8 YNW C7 C8 DOUB Y N 9 YNW C7 C13 SING Y N 10 YNW C8 C9 SING Y N 11 YNW C9 C10 DOUB Y N 12 YNW C10 C11 SING N N 13 YNW C10 C12 SING Y N 14 YNW C12 C13 DOUB Y N 15 YNW C13 CL14 SING N N 16 YNW C15 C16 SING Y N 17 YNW C16 N17 SING Y N 18 YNW C16 C20 DOUB Y N 19 YNW N17 C18 SING Y N 20 YNW C18 N19 DOUB Y N 21 YNW C18 N21 SING N N 22 YNW N19 C20 SING Y N 23 YNW N21 C22 SING N N 24 YNW C22 C23 SING N N 25 YNW C23 C24 DOUB Y N 26 YNW C23 C28 SING Y N 27 YNW C24 C25 SING Y N 28 YNW C25 C26 DOUB Y N 29 YNW C26 C27 SING Y N 30 YNW C27 C28 DOUB Y N 31 YNW C11 H34 SING N N 32 YNW C11 H35 SING N N 33 YNW C11 H33 SING N N 34 YNW C15 H37 SING N N 35 YNW C22 H41 SING N N 36 YNW C22 H40 SING N N 37 YNW C24 H42 SING N N 38 YNW C25 H43 SING N N 39 YNW C26 H44 SING N N 40 YNW C27 H45 SING N N 41 YNW C28 H46 SING N N 42 YNW C12 H36 SING N N 43 YNW C5 H30 SING N N 44 YNW C8 H31 SING N N 45 YNW C9 H32 SING N N 46 YNW N17 H38 SING N N 47 YNW N21 H39 SING N N 48 YNW O1 H29 SING N N 49 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YNW SMILES ACDLabs 12.01 "O=C(O)c1cc(cc2[NH]c(nc12)NCc1ccccc1)c1ccc(C)cc1Cl" YNW InChI InChI 1.06 "InChI=1S/C22H18ClN3O2/c1-13-7-8-16(18(23)9-13)15-10-17(21(27)28)20-19(11-15)25-22(26-20)24-12-14-5-3-2-4-6-14/h2-11H,12H2,1H3,(H,27,28)(H2,24,25,26)" YNW InChIKey InChI 1.06 MAEATACLGJZGNP-UHFFFAOYSA-N YNW SMILES_CANONICAL CACTVS 3.385 "Cc1ccc(c(Cl)c1)c2cc3[nH]c(NCc4ccccc4)nc3c(c2)C(O)=O" YNW SMILES CACTVS 3.385 "Cc1ccc(c(Cl)c1)c2cc3[nH]c(NCc4ccccc4)nc3c(c2)C(O)=O" YNW SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1ccc(c(c1)Cl)c2cc(c3c(c2)[nH]c(n3)NCc4ccccc4)C(=O)O" YNW SMILES "OpenEye OEToolkits" 2.0.7 "Cc1ccc(c(c1)Cl)c2cc(c3c(c2)[nH]c(n3)NCc4ccccc4)C(=O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YNW "SYSTEMATIC NAME" ACDLabs 12.01 "(6M)-2-(benzylamino)-6-(2-chloro-4-methylphenyl)-1H-benzimidazole-4-carboxylic acid" YNW "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "6-(2-chloranyl-4-methyl-phenyl)-2-[(phenylmethyl)amino]-1~{H}-benzimidazole-4-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YNW "Create component" 2023-02-13 RCSB YNW "Initial release" 2024-02-21 RCSB #