data_YNX # _chem_comp.id YNX _chem_comp.name "(2E)-1-[(3aR,6aS)-5-(1H-benzotriazole-5-carbonyl)hexahydropyrrolo[3,4-c]pyrrol-2(1H)-yl]-3-[4-(trifluoromethoxy)phenyl]prop-2-en-1-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H20 F3 N5 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-19 _chem_comp.pdbx_modified_date 2024-12-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 471.432 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YNX _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7G4F _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YNX C01 C1 C 0 1 N N N N N N -12.354 9.803 48.256 1.339 -2.078 0.426 C01 YNX 1 YNX C04 C2 C 0 1 N N R N N N -12.148 11.045 49.109 2.179 -0.874 0.056 C04 YNX 2 YNX C05 C3 C 0 1 N N R N N N -13.335 11.026 49.957 1.442 0.190 0.966 C05 YNX 3 YNX C06 C4 C 0 1 N N N N N N -13.107 12.355 50.645 2.288 1.397 0.718 C06 YNX 4 YNX C11 C5 C 0 1 N N N N N N -11.192 12.805 52.206 4.800 1.593 0.454 C11 YNX 5 YNX C15 C6 C 0 1 Y N N N N N -8.207 10.957 53.630 7.483 -1.022 0.474 C15 YNX 6 YNX C16 C7 C 0 1 Y N N N N N -8.904 13.612 52.887 7.121 1.598 -0.424 C16 YNX 7 YNX C17 C8 C 0 1 Y N N N N N -7.592 13.324 53.425 8.343 0.956 -0.641 C17 YNX 8 YNX C18 C9 C 0 1 Y N N N N N -7.256 12.047 53.786 8.518 -0.365 -0.186 C18 YNX 9 YNX C22 C10 C 0 1 N N N N N N -14.410 8.635 47.440 -1.172 -2.246 0.107 C22 YNX 10 YNX C24 C11 C 0 1 N N N N N N -13.522 7.673 46.694 -2.470 -1.575 0.061 C24 YNX 11 YNX C25 C12 C 0 1 N N N N N N -14.045 6.574 46.200 -3.591 -2.288 -0.181 C25 YNX 12 YNX C26 C13 C 0 1 Y N N N N N -13.205 5.838 45.188 -4.896 -1.613 -0.228 C26 YNX 13 YNX C27 C14 C 0 1 Y N N N N N -12.375 6.585 44.330 -6.059 -2.350 -0.478 C27 YNX 14 YNX C28 C15 C 0 1 Y N N N N N -11.597 5.889 43.370 -7.279 -1.713 -0.521 C28 YNX 15 YNX N02 N1 N 0 1 N N N N N N -13.781 9.670 48.186 -0.054 -1.534 0.349 N02 YNX 16 YNX C03 C16 C 0 1 N N N N N N -14.433 10.703 48.970 0.019 -0.061 0.587 C03 YNX 17 YNX N07 N2 N 0 1 N N N N N N -11.760 12.120 51.067 3.674 0.862 0.565 N07 YNX 18 YNX C08 C17 C 0 1 N N N N N N -11.122 11.148 50.203 3.587 -0.633 0.557 C08 YNX 19 YNX C12 C18 C 0 1 Y N N N N N -9.799 12.563 52.727 6.096 0.922 0.226 C12 YNX 20 YNX O13 O1 O 0 1 N N N N N N -11.905 13.570 52.792 4.750 2.804 0.541 O13 YNX 21 YNX C14 C19 C 0 1 Y N N N N N -9.448 11.242 53.113 6.292 -0.391 0.678 C14 YNX 22 YNX N19 N3 N 0 1 Y N N N N N -5.965 12.053 54.279 9.797 -0.721 -0.537 N19 YNX 23 YNX N20 N4 N 0 1 Y N N N N N -5.503 13.334 54.205 10.357 0.385 -1.192 N20 YNX 24 YNX N21 N5 N 0 1 Y N N N N N -6.514 14.128 53.681 9.496 1.339 -1.238 N21 YNX 25 YNX O23 O2 O 0 1 N N N N N N -15.629 8.497 47.402 -1.102 -3.448 -0.072 O23 YNX 26 YNX C29 C20 C 0 1 Y N N N N N -11.655 4.514 43.283 -7.357 -0.340 -0.317 C29 YNX 27 YNX C30 C21 C 0 1 Y N N N N N -12.500 3.765 44.139 -6.204 0.396 -0.068 C30 YNX 28 YNX C31 C22 C 0 1 Y N N N N N -13.274 4.461 45.107 -4.980 -0.232 -0.016 C31 YNX 29 YNX O32 O3 O 0 1 N N N N N N -10.862 3.870 42.286 -8.562 0.283 -0.361 O32 YNX 30 YNX C33 C23 C 0 1 N N N N N N -10.567 2.529 42.457 -8.570 1.695 -0.142 C33 YNX 31 YNX F34 F1 F 0 1 N N N N N N -9.797 2.505 43.536 -7.787 2.322 -1.117 F34 YNX 32 YNX F35 F2 F 0 1 N N N N N N -9.991 2.026 41.360 -9.883 2.171 -0.221 F35 YNX 33 YNX F36 F3 F 0 1 N N N N N N -11.662 1.847 42.687 -8.049 1.974 1.126 F36 YNX 34 YNX H37 H1 H 0 1 N N N N N N -11.901 8.921 48.732 1.481 -2.885 -0.292 H37 YNX 35 YNX H38 H2 H 0 1 N N N N N N -11.923 9.940 47.253 1.569 -2.413 1.438 H38 YNX 36 YNX H09 H3 H 0 1 N N N N N N -12.127 11.944 48.475 2.083 -0.637 -1.004 H09 YNX 37 YNX H10 H4 H 0 1 N N N N N N -13.259 10.215 50.696 1.573 -0.119 2.003 H10 YNX 38 YNX H42 H5 H 0 1 N N N N N N -13.186 13.205 49.951 1.972 1.902 -0.195 H42 YNX 39 YNX H41 H6 H 0 1 N N N N N N -13.790 12.510 51.493 2.235 2.078 1.568 H41 YNX 40 YNX H46 H7 H 0 1 N N N N N N -7.944 9.949 53.914 7.622 -2.035 0.821 H46 YNX 41 YNX H47 H8 H 0 1 N N N N N N -9.181 14.620 52.616 6.971 2.611 -0.767 H47 YNX 42 YNX H49 H9 H 0 1 N N N N N N -12.470 7.884 46.567 -2.533 -0.508 0.220 H49 YNX 43 YNX H50 H10 H 0 1 N N N N N N -15.019 6.219 46.501 -3.528 -3.354 -0.340 H50 YNX 44 YNX H51 H11 H 0 1 N N N N N N -12.332 7.662 44.401 -6.000 -3.417 -0.638 H51 YNX 45 YNX H52 H12 H 0 1 N N N N N N -10.953 6.441 42.701 -8.177 -2.281 -0.715 H52 YNX 46 YNX H40 H13 H 0 1 N N N N N N -14.697 11.576 48.354 -0.647 0.226 1.401 H40 YNX 47 YNX H39 H14 H 0 1 N N N N N N -15.334 10.324 49.474 -0.234 0.484 -0.323 H39 YNX 48 YNX H43 H15 H 0 1 N N N N N N -10.974 10.185 50.714 3.714 -1.034 1.562 H43 YNX 49 YNX H44 H16 H 0 1 N N N N N N -10.157 11.514 49.822 4.320 -1.060 -0.127 H44 YNX 50 YNX H45 H17 H 0 1 N N N N N N -10.170 10.447 52.998 5.493 -0.907 1.190 H45 YNX 51 YNX H48 H18 H 0 1 N N N N N N -5.461 11.262 54.627 10.228 -1.573 -0.366 H48 YNX 52 YNX H53 H19 H 0 1 N N N N N N -12.555 2.689 44.058 -6.270 1.463 0.090 H53 YNX 53 YNX H54 H20 H 0 1 N N N N N N -13.917 3.913 45.780 -4.086 0.341 0.182 H54 YNX 54 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YNX C01 N02 SING N N 1 YNX N02 C03 SING N N 2 YNX C01 C04 SING N N 3 YNX C03 C05 SING N N 4 YNX C04 C05 SING N N 5 YNX C05 C06 SING N N 6 YNX C06 N07 SING N N 7 YNX C04 C08 SING N N 8 YNX N07 C08 SING N N 9 YNX N07 C11 SING N N 10 YNX C11 C12 SING N N 11 YNX C11 O13 DOUB N N 12 YNX C12 C14 DOUB Y N 13 YNX C14 C15 SING Y N 14 YNX C12 C16 SING Y N 15 YNX C16 C17 DOUB Y N 16 YNX C15 C18 DOUB Y N 17 YNX C17 C18 SING Y N 18 YNX C18 N19 SING Y N 19 YNX N19 N20 SING Y N 20 YNX C17 N21 SING Y N 21 YNX N20 N21 DOUB Y N 22 YNX N02 C22 SING N N 23 YNX C22 O23 DOUB N N 24 YNX C22 C24 SING N N 25 YNX C24 C25 DOUB N E 26 YNX C25 C26 SING N N 27 YNX C26 C27 DOUB Y N 28 YNX C27 C28 SING Y N 29 YNX C28 C29 DOUB Y N 30 YNX C29 C30 SING Y N 31 YNX C26 C31 SING Y N 32 YNX C30 C31 DOUB Y N 33 YNX C29 O32 SING N N 34 YNX O32 C33 SING N N 35 YNX C33 F34 SING N N 36 YNX C33 F35 SING N N 37 YNX C33 F36 SING N N 38 YNX C01 H37 SING N N 39 YNX C01 H38 SING N N 40 YNX C04 H09 SING N N 41 YNX C05 H10 SING N N 42 YNX C06 H42 SING N N 43 YNX C06 H41 SING N N 44 YNX C15 H46 SING N N 45 YNX C16 H47 SING N N 46 YNX C24 H49 SING N N 47 YNX C25 H50 SING N N 48 YNX C27 H51 SING N N 49 YNX C28 H52 SING N N 50 YNX C03 H40 SING N N 51 YNX C03 H39 SING N N 52 YNX C08 H43 SING N N 53 YNX C08 H44 SING N N 54 YNX C14 H45 SING N N 55 YNX N19 H48 SING N N 56 YNX C30 H53 SING N N 57 YNX C31 H54 SING N N 58 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YNX SMILES ACDLabs 12.01 "FC(F)(F)Oc1ccc(cc1)/C=C/C(=O)N1CC2CN(CC2C1)C(=O)c1cc2nn[NH]c2cc1" YNX InChI InChI 1.06 "InChI=1S/C23H20F3N5O3/c24-23(25,26)34-18-5-1-14(2-6-18)3-8-21(32)30-10-16-12-31(13-17(16)11-30)22(33)15-4-7-19-20(9-15)28-29-27-19/h1-9,16-17H,10-13H2,(H,27,28,29)" YNX InChIKey InChI 1.06 UTYYEESWVZZXSP-UHFFFAOYSA-N YNX SMILES_CANONICAL CACTVS 3.385 "FC(F)(F)Oc1ccc(/C=C/C(=O)N2C[C@@H]3CN(C[C@H]3C2)C(=O)c4ccc5[nH]nnc5c4)cc1" YNX SMILES CACTVS 3.385 "FC(F)(F)Oc1ccc(C=CC(=O)N2C[CH]3CN(C[CH]3C2)C(=O)c4ccc5[nH]nnc5c4)cc1" YNX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1/C=C/C(=O)N2C[C@@H]3CN(C[C@H]3C2)C(=O)c4ccc5c(c4)nn[nH]5)OC(F)(F)F" YNX SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1C=CC(=O)N2CC3CN(CC3C2)C(=O)c4ccc5c(c4)nn[nH]5)OC(F)(F)F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YNX "SYSTEMATIC NAME" ACDLabs 12.01 "(2E)-1-[(3aR,6aS)-5-(1H-benzotriazole-5-carbonyl)hexahydropyrrolo[3,4-c]pyrrol-2(1H)-yl]-3-[4-(trifluoromethoxy)phenyl]prop-2-en-1-one" YNX "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(~{E})-1-[(3~{a}~{R},6~{a}~{R})-5-(1~{H}-benzotriazol-5-ylcarbonyl)-1,3,3~{a},4,6,6~{a}-hexahydropyrrolo[3,4-c]pyrrol-2-yl]-3-[4-(trifluoromethyloxy)phenyl]prop-2-en-1-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YNX "Create component" 2023-06-19 RCSB YNX "Initial release" 2024-12-18 RCSB #