data_YNY # _chem_comp.id YNY _chem_comp.name "methyl (8R)-8-{[(4P)-6-amino-3H-purin-3-yl]methyl}-4-hydroxy-6-(5,6,7-trimethoxy-1H-indole-2-carbonyl)-3,6,7,8-tetrahydropyrrolo[3,2-e]indole-2-carboxylate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C30 H28 N8 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-03-15 _chem_comp.pdbx_modified_date 2021-11-12 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 612.593 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YNY _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7LXJ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YNY C20 C1 C 0 1 Y N N -36.948 -7.916 15.632 0.240 2.606 -1.098 C20 YNY 1 YNY C21 C2 C 0 1 N N N -36.077 -5.373 18.052 -0.378 -0.175 0.396 C21 YNY 2 YNY C23 C3 C 0 1 N N N -34.493 -3.389 17.552 0.300 -2.530 -0.075 C23 YNY 3 YNY C25 C4 C 0 1 Y N N -35.376 -2.474 16.826 1.722 -2.169 -0.001 C25 YNY 4 YNY C18 C5 C 0 1 Y N N -36.778 -7.131 13.623 1.917 2.322 -2.422 C18 YNY 5 YNY C16 C6 C 0 1 Y N N -38.134 -8.233 14.914 1.191 3.625 -0.867 C16 YNY 6 YNY C10 C7 C 0 1 N N N -35.613 -7.978 17.752 -1.926 1.569 -0.557 C10 YNY 7 YNY C26 C8 C 0 1 Y N N -36.724 -2.414 16.900 2.761 -2.992 -0.305 C26 YNY 8 YNY C27 C9 C 0 1 Y N N -37.151 -1.346 16.053 3.960 -2.267 -0.105 C27 YNY 9 YNY C14 C10 C 0 1 Y N N -39.154 -8.955 15.521 0.912 4.589 0.117 C14 YNY 10 YNY C28 C11 C 0 1 Y N N -38.416 -0.839 15.740 5.317 -2.594 -0.256 C28 YNY 11 YNY N17 N1 N 0 1 Y N N -38.010 -7.704 13.622 2.207 3.395 -1.716 N17 YNY 12 YNY O24 O1 O 0 1 N N N -33.323 -3.076 17.563 -0.025 -3.681 -0.296 O24 YNY 13 YNY C01 C12 C 0 1 N N N -34.146 -12.385 22.364 -10.025 0.490 0.358 C01 YNY 14 YNY C03 C13 C 0 1 N N N -33.012 -10.252 22.483 -7.637 0.436 0.391 C03 YNY 15 YNY C05 C14 C 0 1 Y N N -33.154 -9.000 21.708 -6.344 -0.250 0.272 C05 YNY 16 YNY C06 C15 C 0 1 Y N N -34.208 -8.655 20.887 -5.125 0.335 0.415 C06 YNY 17 YNY C07 C16 C 0 1 Y N N -33.945 -7.361 20.357 -4.141 -0.666 0.225 C07 YNY 18 YNY C08 C17 C 0 1 Y N N -34.599 -6.512 19.501 -2.739 -0.650 0.254 C08 YNY 19 YNY C09 C18 C 0 1 N N R -35.858 -6.736 18.761 -1.765 0.479 0.505 C09 YNY 20 YNY C12 C19 C 0 1 Y N N -37.886 -9.031 17.439 -1.110 3.564 0.574 C12 YNY 21 YNY C29 C20 C 0 1 Y N N -38.524 0.215 14.867 6.283 -1.653 0.022 C29 YNY 22 YNY C31 C21 C 0 1 N N N -40.504 1.182 15.679 7.900 -3.294 -0.570 C31 YNY 23 YNY C32 C22 C 0 1 Y N N -37.370 0.810 14.279 5.920 -0.375 0.454 C32 YNY 24 YNY C34 C23 C 0 1 N N N -38.145 3.005 13.789 7.383 0.586 2.065 C34 YNY 25 YNY C35 C24 C 0 1 Y N N -36.110 0.312 14.594 4.586 -0.038 0.608 C35 YNY 26 YNY C37 C25 C 0 1 N N N -34.219 1.619 14.956 3.956 2.179 0.019 C37 YNY 27 YNY C38 C26 C 0 1 Y N N -36.001 -0.778 15.480 3.595 -0.979 0.330 C38 YNY 28 YNY C40 C27 C 0 1 Y N N -34.044 -5.294 19.176 -2.025 -1.807 0.029 C40 YNY 29 YNY C41 C28 C 0 1 Y N N -32.787 -4.865 19.696 -2.714 -3.002 -0.230 C41 YNY 30 YNY C42 C29 C 0 1 Y N N -32.118 -5.725 20.565 -4.090 -3.035 -0.262 C42 YNY 31 YNY C44 C30 C 0 1 Y N N -32.692 -6.942 20.909 -4.823 -1.868 -0.036 C44 YNY 32 YNY N11 N2 N 0 1 Y N N -36.809 -8.322 16.930 -0.914 2.607 -0.349 N11 YNY 33 YNY N13 N3 N 0 1 Y N N -38.991 -9.349 16.810 -0.236 4.511 0.796 N13 YNY 34 YNY N15 N4 N 0 1 N N N -40.327 -9.278 14.897 1.807 5.596 0.376 N15 YNY 35 YNY N19 N5 N 0 1 Y N N -36.070 -7.202 14.796 0.733 1.842 -2.061 N19 YNY 36 YNY N22 N6 N 0 1 N N N -34.818 -4.566 18.285 -0.645 -1.585 0.101 N22 YNY 37 YNY N39 N7 N 0 1 Y N N -34.916 -1.476 15.969 2.218 -0.937 0.382 N39 YNY 38 YNY N45 N8 N 0 1 Y N N -32.226 -7.948 21.739 -6.172 -1.593 -0.004 N45 YNY 39 YNY O02 O2 O 0 1 N N N -34.113 -11.002 22.665 -8.785 -0.253 0.227 O02 YNY 40 YNY O04 O3 O 0 1 N N N -31.938 -10.602 22.964 -7.674 1.626 0.637 O04 YNY 41 YNY O30 O4 O 0 1 N N N -39.764 0.704 14.571 7.597 -1.970 -0.125 O30 YNY 42 YNY O33 O5 O 0 1 N N N -37.410 1.863 13.407 6.884 0.545 0.726 O33 YNY 43 YNY O36 O6 O 0 1 N N N -34.960 0.822 14.073 4.242 1.209 1.029 O36 YNY 44 YNY O43 O7 O 0 1 N N N -30.896 -5.382 21.148 -4.736 -4.204 -0.516 O43 YNY 45 YNY H211 H1 H 0 0 N N N -36.947 -4.855 18.483 0.193 0.280 -0.413 H211 YNY 46 YNY H212 H2 H 0 0 N N N -36.238 -5.526 16.975 0.160 -0.080 1.339 H212 YNY 47 YNY H181 H3 H 0 0 N N N -36.377 -6.645 12.746 2.549 1.898 -3.189 H181 YNY 48 YNY H101 H4 H 0 0 N N N -35.334 -8.860 18.347 -1.801 1.132 -1.548 H101 YNY 49 YNY H102 H5 H 0 0 N N N -34.787 -7.718 17.073 -2.920 2.009 -0.478 H102 YNY 50 YNY H261 H6 H 0 0 N N N -37.361 -3.055 17.491 2.685 -4.016 -0.639 H261 YNY 51 YNY H281 H7 H 0 0 N N N -39.301 -1.273 16.181 5.602 -3.581 -0.590 H281 YNY 52 YNY H013 H9 H 0 0 N N N -35.144 -12.787 22.592 -10.053 1.286 -0.386 H013 YNY 53 YNY H011 H10 H 0 0 N N N -33.926 -12.533 21.296 -10.869 -0.182 0.203 H011 YNY 54 YNY H012 H11 H 0 0 N N N -33.393 -12.910 22.970 -10.084 0.924 1.357 H012 YNY 55 YNY H061 H12 H 0 0 N N N -35.079 -9.260 20.683 -4.940 1.376 0.634 H061 YNY 56 YNY H091 H13 H 0 0 N N N -36.696 -6.963 19.437 -1.912 0.896 1.502 H091 YNY 57 YNY H121 H14 H 0 0 N N N -37.806 -9.357 18.466 -2.021 3.550 1.153 H121 YNY 58 YNY H311 H15 H 0 0 N N N -41.482 1.552 15.336 8.981 -3.414 -0.644 H311 YNY 59 YNY H312 H16 H 0 0 N N N -40.654 0.365 16.400 7.502 -4.016 0.143 H312 YNY 60 YNY H313 H17 H 0 0 N N N -39.952 2.001 16.163 7.448 -3.461 -1.548 H313 YNY 61 YNY H343 H18 H 0 0 N N N -38.086 3.763 12.994 6.565 0.807 2.751 H343 YNY 62 YNY H341 H19 H 0 0 N N N -39.196 2.726 13.953 7.819 -0.380 2.319 H341 YNY 63 YNY H342 H20 H 0 0 N N N -37.726 3.417 14.719 8.145 1.361 2.146 H342 YNY 64 YNY H372 H21 H 0 0 N N N -33.313 1.984 14.449 4.801 2.252 -0.665 H372 YNY 65 YNY H371 H22 H 0 0 N N N -34.830 2.476 15.277 3.066 1.876 -0.533 H371 YNY 66 YNY H373 H23 H 0 0 N N N -33.933 1.023 15.835 3.781 3.149 0.486 H373 YNY 67 YNY H411 H24 H 0 0 N N N -32.368 -3.907 19.426 -2.156 -3.910 -0.406 H411 YNY 68 YNY H151 H25 H 0 0 N N N -40.913 -9.784 15.530 2.639 5.646 -0.121 H151 YNY 69 YNY H152 H26 H 0 0 N N N -40.792 -8.441 14.609 1.608 6.258 1.057 H152 YNY 70 YNY H391 H28 H 0 0 N N N -33.958 -1.296 15.745 1.685 -0.171 0.646 H391 YNY 71 YNY H451 H29 H 0 0 N N N -31.377 -7.928 22.268 -6.884 -2.235 -0.149 H451 YNY 72 YNY H431 H30 H 0 0 N N N -30.600 -6.092 21.705 -5.007 -4.684 0.279 H431 YNY 73 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YNY O33 C34 SING N N 1 YNY O33 C32 SING N N 2 YNY N17 C18 DOUB Y N 3 YNY N17 C16 SING Y N 4 YNY C18 N19 SING Y N 5 YNY O36 C35 SING N N 6 YNY O36 C37 SING N N 7 YNY C32 C35 DOUB Y N 8 YNY C32 C29 SING Y N 9 YNY O30 C29 SING N N 10 YNY O30 C31 SING N N 11 YNY C35 C38 SING Y N 12 YNY N19 C20 DOUB Y N 13 YNY C29 C28 DOUB Y N 14 YNY N15 C14 SING N N 15 YNY C16 C14 DOUB Y N 16 YNY C16 C20 SING Y N 17 YNY C38 N39 SING Y N 18 YNY C38 C27 DOUB Y N 19 YNY C14 N13 SING Y N 20 YNY C20 N11 SING Y N 21 YNY C28 C27 SING Y N 22 YNY N39 C25 SING Y N 23 YNY C27 C26 SING Y N 24 YNY N13 C12 DOUB Y N 25 YNY C25 C26 DOUB Y N 26 YNY C25 C23 SING N N 27 YNY N11 C12 SING Y N 28 YNY N11 C10 SING N N 29 YNY C23 O24 DOUB N N 30 YNY C23 N22 SING N N 31 YNY C10 C09 SING N N 32 YNY C21 N22 SING N N 33 YNY C21 C09 SING N N 34 YNY N22 C40 SING N N 35 YNY C09 C08 SING N N 36 YNY C40 C08 DOUB Y N 37 YNY C40 C41 SING Y N 38 YNY C08 C07 SING Y N 39 YNY C41 C42 DOUB Y N 40 YNY C07 C06 SING Y N 41 YNY C07 C44 DOUB Y N 42 YNY C42 C44 SING Y N 43 YNY C42 O43 SING N N 44 YNY C06 C05 DOUB Y N 45 YNY C44 N45 SING Y N 46 YNY C05 N45 SING Y N 47 YNY C05 C03 SING N N 48 YNY C01 O02 SING N N 49 YNY C03 O02 SING N N 50 YNY C03 O04 DOUB N N 51 YNY C21 H211 SING N N 52 YNY C21 H212 SING N N 53 YNY C18 H181 SING N N 54 YNY C10 H101 SING N N 55 YNY C10 H102 SING N N 56 YNY C26 H261 SING N N 57 YNY C28 H281 SING N N 58 YNY C01 H013 SING N N 59 YNY C01 H011 SING N N 60 YNY C01 H012 SING N N 61 YNY C06 H061 SING N N 62 YNY C09 H091 SING N N 63 YNY C12 H121 SING N N 64 YNY C31 H311 SING N N 65 YNY C31 H312 SING N N 66 YNY C31 H313 SING N N 67 YNY C34 H343 SING N N 68 YNY C34 H341 SING N N 69 YNY C34 H342 SING N N 70 YNY C37 H372 SING N N 71 YNY C37 H371 SING N N 72 YNY C37 H373 SING N N 73 YNY C41 H411 SING N N 74 YNY N15 H151 SING N N 75 YNY N15 H152 SING N N 76 YNY N39 H391 SING N N 77 YNY N45 H451 SING N N 78 YNY O43 H431 SING N N 79 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YNY SMILES ACDLabs 12.01 "COc1cc2cc([NH]c2c(OC)c1OC)C(=O)N1CC(CN2C=NC(N)=C3N=CN=C32)c2c1cc(O)c1[NH]c(cc12)C(=O)OC" YNY InChI InChI 1.03 "InChI=1S/C30H28N8O7/c1-42-20-6-13-5-16(35-22(13)26(44-3)25(20)43-2)29(40)38-10-14(9-37-12-34-27(31)24-28(37)33-11-32-24)21-15-7-17(30(41)45-4)36-23(15)19(39)8-18(21)38/h5-8,11-12,14,35-36,39H,9-10,31H2,1-4H3/t14-/m1/s1" YNY InChIKey InChI 1.03 AZHBDEJKEVQJNC-CQSZACIVSA-N YNY SMILES_CANONICAL CACTVS 3.385 "COC(=O)c1[nH]c2c(O)cc3N(C[C@@H](Cn4cnc(N)c5ncnc45)c3c2c1)C(=O)c6[nH]c7c(c6)cc(OC)c(OC)c7OC" YNY SMILES CACTVS 3.385 "COC(=O)c1[nH]c2c(O)cc3N(C[CH](Cn4cnc(N)c5ncnc45)c3c2c1)C(=O)c6[nH]c7c(c6)cc(OC)c(OC)c7OC" YNY SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COc1cc2cc([nH]c2c(c1OC)OC)C(=O)N3C[C@H](c4c3cc(c5c4cc([nH]5)C(=O)OC)O)Cn6cnc(c-7ncnc67)N" YNY SMILES "OpenEye OEToolkits" 2.0.7 "COc1cc2cc([nH]c2c(c1OC)OC)C(=O)N3CC(c4c3cc(c5c4cc([nH]5)C(=O)OC)O)Cn6cnc(c-7ncnc67)N" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YNY "SYSTEMATIC NAME" ACDLabs 12.01 "methyl (8R)-8-{[(4P)-6-amino-3H-purin-3-yl]methyl}-4-hydroxy-6-(5,6,7-trimethoxy-1H-indole-2-carbonyl)-3,6,7,8-tetrahydropyrrolo[3,2-e]indole-2-carboxylate" YNY "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "methyl (8~{R})-8-[(6-azanylpurin-3-yl)methyl]-4-oxidanyl-6-[(5,6,7-trimethoxy-1~{H}-indol-2-yl)carbonyl]-7,8-dihydro-3~{H}-pyrrolo[3,2-e]indole-2-carboxylate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YNY "Create component" 2021-03-15 RCSB YNY "Initial release" 2021-11-17 RCSB ##