data_YO0 # _chem_comp.id YO0 _chem_comp.name "1-[7-[1,5-dimethyl-3-(phenoxymethyl)pyrazol-4-yl]-3-(3-naphthalen-1-yloxypropyl)-1~{H}-indol-2-yl]-2,2-bis(oxidanyl)ethanone" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C35 H33 N3 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-12-07 _chem_comp.pdbx_modified_date 2025-05-16 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 575.654 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YO0 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8X62 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YO0 N1 N1 N 0 1 Y N N N N N 44.999 3.528 26.712 6.289 -0.882 -0.298 N1 YO0 1 YO0 N3 N2 N 0 1 Y N N N N N 45.852 0.224 23.308 2.232 1.318 0.477 N3 YO0 2 YO0 C4 C1 C 0 1 Y N N N N N 40.052 2.560 26.611 1.946 -3.514 1.856 C4 YO0 3 YO0 C5 C2 C 0 1 Y N N N N N 40.864 2.513 27.744 2.666 -3.362 0.680 C5 YO0 4 YO0 C6 C3 C 0 1 Y N N N N N 40.285 2.540 29.036 2.544 -4.305 -0.331 C6 YO0 5 YO0 C7 C4 C 0 1 N N N N N N 42.747 2.372 26.301 4.198 -2.202 -0.719 C7 YO0 6 YO0 C8 C5 C 0 1 Y N N N N N 44.269 2.453 26.366 5.054 -0.962 -0.717 C8 YO0 7 YO0 C10 C6 C 0 1 Y N N N N N 45.220 1.378 26.084 4.661 0.314 -1.168 C10 YO0 8 YO0 C13 C7 C 0 1 Y N N N N N 44.913 -0.062 25.638 3.335 0.677 -1.727 C13 YO0 9 YO0 C15 C8 C 0 1 Y N N N N N 45.005 -1.765 23.866 1.059 1.461 -1.429 C15 YO0 10 YO0 C17 C9 C 0 1 Y N N N N N 44.039 -2.306 26.044 1.866 0.919 -3.621 C17 YO0 11 YO0 C20 C10 C 0 1 Y N N N N N 45.491 -1.826 22.486 0.229 1.858 -0.356 C20 YO0 12 YO0 C21 C11 C 0 1 N N N N N N 46.622 0.047 21.032 0.483 2.091 2.132 C21 YO0 13 YO0 C22 C12 C 0 1 N N N N N N 45.401 -3.091 21.595 -1.205 2.310 -0.460 C22 YO0 14 YO0 C24 C13 C 0 1 N N N N N N 43.160 -4.322 20.922 -3.588 1.558 -0.439 C24 YO0 15 YO0 C26 C14 C 0 1 Y N N N N N 42.165 -6.867 23.340 -6.705 -0.404 -0.284 C26 YO0 16 YO0 C28 C15 C 0 1 Y N N N N N 39.760 -6.722 23.719 -8.532 1.185 -0.556 C28 YO0 17 YO0 C1 C16 C 0 1 Y N N N N N 38.887 2.614 29.176 1.706 -5.391 -0.164 C1 YO0 18 YO0 C2 C17 C 0 1 Y N N N N N 38.076 2.662 28.043 0.990 -5.539 1.009 C2 YO0 19 YO0 C3 C18 C 0 1 Y N N N N N 38.650 2.635 26.755 1.110 -4.601 2.018 C3 YO0 20 YO0 O1 O1 O 0 1 N N N N N N 42.287 2.436 27.613 3.489 -2.293 0.518 O1 YO0 21 YO0 N2 N3 N 0 1 Y N N N N N 46.321 3.246 26.670 6.730 0.437 -0.462 N2 YO0 22 YO0 C9 C19 C 0 1 Y N N N N N 46.541 1.967 26.297 5.721 1.156 -0.995 C9 YO0 23 YO0 C11 C20 C 0 1 N N N N N N 47.903 1.267 26.132 5.759 2.622 -1.340 C11 YO0 24 YO0 C12 C21 C 0 1 N N N N N N 47.371 4.198 26.987 8.059 0.947 -0.114 C12 YO0 25 YO0 C14 C22 C 0 1 Y N N N N N 45.265 -0.465 24.308 2.309 1.121 -0.879 C14 YO0 26 YO0 C16 C23 C 0 1 Y N N N N N 44.384 -2.697 24.745 0.855 1.352 -2.813 C16 YO0 27 YO0 C18 C24 C 0 1 Y N N N N N 44.307 -0.969 26.495 3.103 0.580 -3.091 C18 YO0 28 YO0 C19 C25 C 0 1 Y N N N N N 46.011 -0.528 22.205 0.962 1.767 0.790 C19 YO0 29 YO0 C23 C26 C 0 1 N N N N N N 44.096 -3.076 20.749 -2.132 1.099 -0.333 C23 YO0 30 YO0 O2 O2 O 0 1 N N N N N N 43.357 -4.943 22.247 -4.453 0.427 -0.320 O2 YO0 31 YO0 C25 C27 C 0 1 Y N N N N N 42.133 -5.568 22.759 -5.789 0.662 -0.393 C25 YO0 32 YO0 C27 C28 C 0 1 Y N N N N N 41.000 -7.436 23.814 -8.094 -0.137 -0.369 C27 YO0 33 YO0 C29 C29 C 0 1 Y N N N N N 39.729 -5.460 23.152 -7.620 2.192 -0.652 C29 YO0 34 YO0 C30 C30 C 0 1 Y N N N N N 40.915 -4.875 22.666 -6.254 1.934 -0.574 C30 YO0 35 YO0 C31 C31 C 0 1 Y N N N N N 43.408 -7.590 23.440 -6.267 -1.725 -0.098 C31 YO0 36 YO0 C32 C32 C 0 1 Y N N N N N 43.434 -8.863 24.014 -7.180 -2.730 -0.003 C32 YO0 37 YO0 C33 C33 C 0 1 Y N N N N N 42.251 -9.437 24.493 -8.546 -2.469 -0.086 C33 YO0 38 YO0 C34 C34 C 0 1 Y N N N N N 41.028 -8.726 24.397 -9.007 -1.200 -0.266 C34 YO0 39 YO0 C35 C35 C 0 1 N N N N N N 46.988 -0.876 19.870 1.403 1.944 3.317 C35 YO0 40 YO0 O3 O3 O 0 1 N N N N N N 46.115 -1.257 18.949 0.975 2.817 4.364 O3 YO0 41 YO0 H1 H1 H 0 1 N N N N N N 46.135 1.180 23.379 2.949 1.163 1.112 H1 YO0 42 YO0 H2 H2 H 0 1 N N N N N N 40.495 2.539 25.626 2.043 -2.784 2.646 H2 YO0 43 YO0 H3 H3 H 0 1 N N N N N N 40.915 2.504 29.912 3.102 -4.189 -1.248 H3 YO0 44 YO0 H4 H4 H 0 1 N N N N N N 42.347 3.214 25.717 3.487 -2.152 -1.544 H4 YO0 45 YO0 H5 H5 H 0 1 N N N N N N 42.437 1.424 25.836 4.832 -3.081 -0.840 H5 YO0 46 YO0 H6 H6 H 0 1 N N N N N N 43.569 -3.014 26.711 1.701 0.838 -4.686 H6 YO0 47 YO0 H9 H9 H 0 1 N N N N N N 45.406 -3.985 22.236 -1.422 3.019 0.338 H9 YO0 48 YO0 H10 H10 H 0 1 N N N N N N 46.269 -3.119 20.920 -1.365 2.790 -1.426 H10 YO0 49 YO0 H11 H11 H 0 1 N N N N N N 42.112 -4.002 20.825 -3.804 2.267 0.360 H11 YO0 50 YO0 H12 H12 H 0 1 N N N N N N 43.392 -5.059 20.140 -3.748 2.038 -1.405 H12 YO0 51 YO0 H13 H13 H 0 1 N N N N N N 38.850 -7.169 24.090 -9.588 1.402 -0.623 H13 YO0 52 YO0 H14 H14 H 0 1 N N N N N N 38.443 2.634 30.160 1.610 -6.124 -0.951 H14 YO0 53 YO0 H15 H15 H 0 1 N N N N N N 37.003 2.720 28.152 0.336 -6.388 1.137 H15 YO0 54 YO0 H16 H16 H 0 1 N N N N N N 38.018 2.672 25.880 0.549 -4.719 2.934 H16 YO0 55 YO0 H17 H17 H 0 1 N N N N N N 48.258 1.394 25.099 5.432 3.206 -0.479 H17 YO0 56 YO0 H18 H18 H 0 1 N N N N N N 48.630 1.712 26.827 6.777 2.907 -1.607 H18 YO0 57 YO0 H19 H19 H 0 1 N N N N N N 47.793 0.195 26.353 5.095 2.815 -2.183 H19 YO0 58 YO0 H20 H20 H 0 1 N N N N N N 46.921 5.164 27.260 8.723 0.845 -0.971 H20 YO0 59 YO0 H21 H21 H 0 1 N N N N N N 47.967 3.819 27.831 7.983 1.999 0.163 H21 YO0 60 YO0 H22 H22 H 0 1 N N N N N N 48.021 4.332 26.110 8.458 0.378 0.726 H22 YO0 61 YO0 H23 H23 H 0 1 N N N N N N 44.180 -3.703 24.410 -0.103 1.612 -3.240 H23 YO0 62 YO0 H24 H24 H 0 1 N N N N N N 44.038 -0.671 27.498 3.891 0.239 -3.746 H24 YO0 63 YO0 H25 H25 H 0 1 N N N N N N 44.381 -3.012 19.689 -1.915 0.390 -1.132 H25 YO0 64 YO0 H26 H26 H 0 1 N N N N N N 43.522 -2.180 21.029 -1.972 0.619 0.633 H26 YO0 65 YO0 H27 H27 H 0 1 N N N N N N 38.795 -4.923 23.082 -7.962 3.206 -0.795 H27 YO0 66 YO0 H28 H28 H 0 1 N N N N N N 40.887 -3.891 22.221 -5.553 2.751 -0.657 H28 YO0 67 YO0 H29 H29 H 0 1 N N N N N N 44.321 -7.147 23.070 -5.211 -1.943 -0.032 H29 YO0 68 YO0 H30 H30 H 0 1 N N N N N N 44.366 -9.404 24.088 -6.841 -3.746 0.140 H30 YO0 69 YO0 H31 H31 H 0 1 N N N N N N 42.270 -10.422 24.936 -9.250 -3.284 -0.008 H31 YO0 70 YO0 H32 H32 H 0 1 N N N N N N 40.116 -9.169 24.769 -10.068 -1.012 -0.328 H32 YO0 71 YO0 H33 H33 H 0 1 N N N N N N 47.889 -0.463 19.392 1.379 0.914 3.670 H33 YO0 72 YO0 O5 O5 O 0 1 N N N N N N 47.129 -1.798 20.394 2.736 2.284 2.929 O5 YO0 73 YO0 H35 H35 H 0 1 N N N N N N 46.545 -1.826 18.321 1.523 2.776 5.159 H35 YO0 74 YO0 O4 O4 O 0 1 N N N N N N 47.700 0.673 21.435 -0.656 2.478 2.293 O4 YO0 75 YO0 H7 H7 H 0 1 N N N N N N 47.477 -1.621 21.260 2.832 3.189 2.603 H7 YO0 76 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YO0 O3 C35 SING N N 1 YO0 C35 C21 SING N N 2 YO0 C23 C24 SING N N 3 YO0 C23 C22 SING N N 4 YO0 C24 O2 SING N N 5 YO0 C21 C19 SING N N 6 YO0 C22 C20 SING N N 7 YO0 C19 C20 DOUB Y N 8 YO0 C19 N3 SING Y N 9 YO0 O2 C25 SING N N 10 YO0 C20 C15 SING Y N 11 YO0 C30 C25 DOUB Y N 12 YO0 C30 C29 SING Y N 13 YO0 C25 C26 SING Y N 14 YO0 C29 C28 DOUB Y N 15 YO0 N3 C14 SING Y N 16 YO0 C26 C31 DOUB Y N 17 YO0 C26 C27 SING Y N 18 YO0 C31 C32 SING Y N 19 YO0 C28 C27 SING Y N 20 YO0 C27 C34 DOUB Y N 21 YO0 C15 C14 DOUB Y N 22 YO0 C15 C16 SING Y N 23 YO0 C32 C33 DOUB Y N 24 YO0 C14 C13 SING Y N 25 YO0 C34 C33 SING Y N 26 YO0 C16 C17 DOUB Y N 27 YO0 C13 C10 SING N N 28 YO0 C13 C18 DOUB Y N 29 YO0 C17 C18 SING Y N 30 YO0 C10 C9 DOUB Y N 31 YO0 C10 C8 SING Y N 32 YO0 C11 C9 SING N N 33 YO0 C9 N2 SING Y N 34 YO0 C7 C8 SING N N 35 YO0 C7 O1 SING N N 36 YO0 C8 N1 DOUB Y N 37 YO0 C4 C3 DOUB Y N 38 YO0 C4 C5 SING Y N 39 YO0 N2 N1 SING Y N 40 YO0 N2 C12 SING N N 41 YO0 C3 C2 SING Y N 42 YO0 O1 C5 SING N N 43 YO0 C5 C6 DOUB Y N 44 YO0 C2 C1 DOUB Y N 45 YO0 C6 C1 SING Y N 46 YO0 N3 H1 SING N N 47 YO0 C4 H2 SING N N 48 YO0 C6 H3 SING N N 49 YO0 C7 H4 SING N N 50 YO0 C7 H5 SING N N 51 YO0 C17 H6 SING N N 52 YO0 C22 H9 SING N N 53 YO0 C22 H10 SING N N 54 YO0 C24 H11 SING N N 55 YO0 C24 H12 SING N N 56 YO0 C28 H13 SING N N 57 YO0 C1 H14 SING N N 58 YO0 C2 H15 SING N N 59 YO0 C3 H16 SING N N 60 YO0 C11 H17 SING N N 61 YO0 C11 H18 SING N N 62 YO0 C11 H19 SING N N 63 YO0 C12 H20 SING N N 64 YO0 C12 H21 SING N N 65 YO0 C12 H22 SING N N 66 YO0 C16 H23 SING N N 67 YO0 C18 H24 SING N N 68 YO0 C23 H25 SING N N 69 YO0 C23 H26 SING N N 70 YO0 C29 H27 SING N N 71 YO0 C30 H28 SING N N 72 YO0 C31 H29 SING N N 73 YO0 C32 H30 SING N N 74 YO0 C33 H31 SING N N 75 YO0 C34 H32 SING N N 76 YO0 C35 H33 SING N N 77 YO0 C35 O5 SING N N 78 YO0 O3 H35 SING N N 79 YO0 C21 O4 DOUB N N 80 YO0 O5 H7 SING N N 81 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YO0 InChI InChI 1.06 "InChI=1S/C35H33N3O5/c1-22-31(29(37-38(22)2)21-43-24-13-4-3-5-14-24)28-17-9-16-26-27(33(36-32(26)28)34(39)35(40)41)18-10-20-42-30-19-8-12-23-11-6-7-15-25(23)30/h3-9,11-17,19,35-36,40-41H,10,18,20-21H2,1-2H3" YO0 InChIKey InChI 1.06 WZCPCAOYSVDSOO-UHFFFAOYSA-N YO0 SMILES_CANONICAL CACTVS 3.385 "Cn1nc(COc2ccccc2)c(c1C)c3cccc4c(CCCOc5cccc6ccccc56)c([nH]c34)C(=O)C(O)O" YO0 SMILES CACTVS 3.385 "Cn1nc(COc2ccccc2)c(c1C)c3cccc4c(CCCOc5cccc6ccccc56)c([nH]c34)C(=O)C(O)O" YO0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(c(nn1C)COc2ccccc2)c3cccc4c3[nH]c(c4CCCOc5cccc6c5cccc6)C(=O)C(O)O" YO0 SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c(c(nn1C)COc2ccccc2)c3cccc4c3[nH]c(c4CCCOc5cccc6c5cccc6)C(=O)C(O)O" # _pdbx_chem_comp_identifier.comp_id YO0 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "1-[7-[1,5-dimethyl-3-(phenoxymethyl)pyrazol-4-yl]-3-(3-naphthalen-1-yloxypropyl)-1~{H}-indol-2-yl]-2,2-bis(oxidanyl)ethanone" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YO0 "Create component" 2023-12-07 PDBJ YO0 "Initial release" 2025-05-21 RCSB #