data_YO4 # _chem_comp.id YO4 _chem_comp.name "2-({(1R)-1-[2-(4,4-dimethylpiperidin-1-yl)-3,6-dimethyl-4-oxo-4H-1-benzopyran-8-yl]ethyl}amino)benzoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H32 N2 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-12-07 _chem_comp.pdbx_modified_date 2024-03-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 448.554 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YO4 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8V8H _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YO4 C10 C1 C 0 1 N N N N N N 64.359 -19.744 12.701 -4.000 -2.191 -1.323 C10 YO4 1 YO4 C14 C2 C 0 1 N N N N N N 62.282 -20.850 13.564 -3.354 -2.631 1.052 C14 YO4 2 YO4 C19 C3 C 0 1 Y N N N N N 65.539 -19.890 18.450 -0.932 2.887 0.094 C19 YO4 3 YO4 C20 C4 C 0 1 Y N N N N N 66.223 -20.118 19.637 -0.033 3.950 0.040 C20 YO4 4 YO4 C22 C5 C 0 1 N N N N N N 67.676 -21.543 21.085 2.269 4.851 -0.314 C22 YO4 5 YO4 C23 C6 C 0 1 Y N N N N N 66.954 -22.222 18.793 1.727 2.412 -0.495 C23 YO4 6 YO4 C1 C7 C 0 1 N N N N N N 67.458 -27.241 17.787 5.488 -0.209 0.365 C1 YO4 7 YO4 C11 C8 C 0 1 N N N N N N 62.951 -20.224 12.345 -4.281 -3.053 -0.090 C11 YO4 8 YO4 C12 C9 C 0 1 N N N N N N 63.045 -21.270 11.239 -4.035 -4.524 -0.429 C12 YO4 9 YO4 C13 C10 C 0 1 N N N N N N 62.101 -19.054 11.847 -5.738 -2.866 0.341 C13 YO4 10 YO4 C15 C11 C 0 1 N N N N N N 62.199 -19.791 14.660 -3.628 -1.167 1.413 C15 YO4 11 YO4 C16 C12 C 0 1 N N N N N N 64.104 -18.453 17.045 -3.195 1.970 0.439 C16 YO4 12 YO4 C17 C13 C 0 1 N N N N N N 63.315 -17.191 16.812 -4.662 2.117 0.751 C17 YO4 13 YO4 C18 C14 C 0 1 N N N N N N 64.777 -18.638 18.260 -2.360 3.103 0.406 C18 YO4 14 YO4 C2 C15 C 0 1 Y N N N N N 66.179 -26.631 18.155 4.671 -1.432 0.285 C2 YO4 15 YO4 C21 C16 C 0 1 Y N N N N N 66.929 -21.284 19.806 1.291 3.706 -0.254 C21 YO4 16 YO4 C24 C17 C 0 1 Y N N N N N 64.622 -24.818 18.273 2.567 -2.521 -0.186 C24 YO4 17 YO4 C25 C18 C 0 1 Y N N N N N 63.715 -25.637 18.906 3.132 -3.737 0.137 C25 YO4 18 YO4 C26 C19 C 0 1 Y N N N N N 64.030 -26.956 19.169 4.457 -3.812 0.539 C26 YO4 19 YO4 C27 C20 C 0 1 Y N N N N N 65.252 -27.451 18.796 5.226 -2.672 0.614 C27 YO4 20 YO4 C3 C21 C 0 1 Y N N N N N 65.870 -25.284 17.878 3.327 -1.360 -0.116 C3 YO4 21 YO4 C4 C22 C 0 1 N N R N N N 66.407 -23.157 16.579 1.329 -0.045 -0.738 C4 YO4 22 YO4 C5 C23 C 0 1 N N N N N N 67.391 -22.694 15.500 1.094 -0.378 -2.213 C5 YO4 23 YO4 C6 C24 C 0 1 Y N N N N N 66.289 -22.031 17.603 0.844 1.354 -0.456 C6 YO4 24 YO4 C7 C25 C 0 1 Y N N N N N 65.564 -20.842 17.419 -0.493 1.578 -0.155 C7 YO4 25 YO4 C8 C26 C 0 1 N N N N N N 64.184 -19.432 16.108 -2.670 0.741 0.175 C8 YO4 26 YO4 C9 C27 C 0 1 N N N N N N 64.245 -18.671 13.779 -4.281 -0.723 -0.989 C9 YO4 27 YO4 N1 N1 N 0 1 N N N N N N 66.779 -24.432 17.235 2.761 -0.134 -0.440 N1 YO4 28 YO4 N2 N2 N 0 1 N N N N N N 63.558 -19.300 14.903 -3.501 -0.350 0.199 N2 YO4 29 YO4 O1 O1 O 0 1 N N N N N N 67.934 -28.108 18.492 5.036 0.850 -0.023 O1 YO4 30 YO4 O2 O2 O 0 1 N N N N N N 68.091 -26.857 16.668 6.737 -0.265 0.868 O2 YO4 31 YO4 O3 O3 O 0 1 N N N N N N 64.880 -20.555 16.297 -1.374 0.556 -0.112 O3 YO4 32 YO4 O4 O4 O 0 1 N N N N N N 64.732 -17.787 19.131 -2.799 4.221 0.627 O4 YO4 33 YO4 H1 H1 H 0 1 N N N N N N 64.845 -19.323 11.808 -2.956 -2.304 -1.615 H1 YO4 34 YO4 H2 H2 H 0 1 N N N N N N 64.955 -20.588 13.079 -4.644 -2.508 -2.143 H2 YO4 35 YO4 H3 H3 H 0 1 N N N N N N 61.270 -21.192 13.299 -3.539 -3.260 1.923 H3 YO4 36 YO4 H4 H4 H 0 1 N N N N N N 62.877 -21.705 13.917 -2.316 -2.740 0.738 H4 YO4 37 YO4 H5 H5 H 0 1 N N N N N N 66.200 -19.380 20.425 -0.372 4.958 0.228 H5 YO4 38 YO4 H6 H6 H 0 1 N N N N N N 67.016 -22.059 21.798 2.706 5.009 0.672 H6 YO4 39 YO4 H7 H7 H 0 1 N N N N N N 68.554 -22.172 20.876 3.059 4.617 -1.028 H7 YO4 40 YO4 H8 H8 H 0 1 N N N N N N 68.005 -20.587 21.517 1.750 5.756 -0.630 H8 YO4 41 YO4 H9 H9 H 0 1 N N N N N N 67.513 -23.134 18.939 2.767 2.233 -0.724 H9 YO4 42 YO4 H10 H10 H 0 1 N N N N N N 62.035 -21.620 10.978 -2.997 -4.657 -0.736 H10 YO4 43 YO4 H11 H11 H 0 1 N N N N N N 63.519 -20.824 10.352 -4.235 -5.138 0.449 H11 YO4 44 YO4 H12 H12 H 0 1 N N N N N N 63.648 -22.120 11.589 -4.696 -4.825 -1.242 H12 YO4 45 YO4 H13 H13 H 0 1 N N N N N N 61.093 -19.414 11.595 -6.398 -3.168 -0.472 H13 YO4 46 YO4 H14 H14 H 0 1 N N N N N N 62.031 -18.290 12.635 -5.938 -3.480 1.219 H14 YO4 47 YO4 H15 H15 H 0 1 N N N N N N 62.568 -18.616 10.952 -5.914 -1.818 0.582 H15 YO4 48 YO4 H16 H16 H 0 1 N N N N N N 61.790 -20.234 15.580 -4.638 -1.072 1.813 H16 YO4 49 YO4 H17 H17 H 0 1 N N N N N N 61.553 -18.963 14.333 -2.907 -0.833 2.158 H17 YO4 50 YO4 H18 H18 H 0 1 N N N N N N 63.389 -16.543 17.698 -4.911 3.175 0.835 H18 YO4 51 YO4 H19 H19 H 0 1 N N N N N N 63.720 -16.662 15.936 -5.250 1.668 -0.049 H19 YO4 52 YO4 H20 H20 H 0 1 N N N N N N 62.260 -17.446 16.631 -4.886 1.615 1.692 H20 YO4 53 YO4 H21 H21 H 0 1 N N N N N N 64.358 -23.789 18.079 1.534 -2.471 -0.498 H21 YO4 54 YO4 H22 H22 H 0 1 N N N N N N 62.752 -25.246 19.199 2.538 -4.637 0.077 H22 YO4 55 YO4 H23 H23 H 0 1 N N N N N N 63.316 -27.595 19.667 4.889 -4.769 0.789 H23 YO4 56 YO4 H24 H24 H 0 1 N N N N N N 65.498 -28.483 19.000 6.258 -2.737 0.928 H24 YO4 57 YO4 H25 H25 H 0 1 N N N N N N 65.423 -23.285 16.104 0.783 -0.752 -0.114 H25 YO4 58 YO4 H26 H26 H 0 1 N N N N N N 67.041 -21.745 15.067 1.445 -1.389 -2.418 H26 YO4 59 YO4 H27 H27 H 0 1 N N N N N N 68.385 -22.548 15.949 0.029 -0.311 -2.435 H27 YO4 60 YO4 H28 H28 H 0 1 N N N N N N 67.454 -23.457 14.710 1.640 0.329 -2.837 H28 YO4 61 YO4 H29 H29 H 0 1 N N N N N N 63.663 -17.815 13.406 -3.989 -0.094 -1.831 H29 YO4 62 YO4 H30 H30 H 0 1 N N N N N N 65.245 -18.329 14.085 -5.344 -0.591 -0.787 H30 YO4 63 YO4 H31 H31 H 0 1 N N N N N N 67.459 -24.191 17.928 3.313 0.663 -0.469 H31 YO4 64 YO4 H32 H32 H 0 1 N N N N N N 68.893 -27.357 16.570 7.235 0.563 0.900 H32 YO4 65 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YO4 O1 C1 DOUB N N 1 YO4 C1 O2 SING N N 2 YO4 C1 C2 SING N N 3 YO4 C2 C3 DOUB Y N 4 YO4 C2 C27 SING Y N 5 YO4 C3 N1 SING N N 6 YO4 C3 C24 SING Y N 7 YO4 N1 C4 SING N N 8 YO4 C4 C5 SING N N 9 YO4 C4 C6 SING N N 10 YO4 C6 C7 DOUB Y N 11 YO4 C6 C23 SING Y N 12 YO4 C7 O3 SING N N 13 YO4 C7 C19 SING Y N 14 YO4 O3 C8 SING N N 15 YO4 C8 N2 SING N N 16 YO4 C8 C16 DOUB N N 17 YO4 N2 C9 SING N N 18 YO4 N2 C15 SING N N 19 YO4 C9 C10 SING N N 20 YO4 C10 C11 SING N N 21 YO4 C11 C12 SING N N 22 YO4 C11 C13 SING N N 23 YO4 C11 C14 SING N N 24 YO4 C14 C15 SING N N 25 YO4 C16 C17 SING N N 26 YO4 C16 C18 SING N N 27 YO4 C18 O4 DOUB N N 28 YO4 C18 C19 SING N N 29 YO4 C19 C20 DOUB Y N 30 YO4 C20 C21 SING Y N 31 YO4 C21 C22 SING N N 32 YO4 C21 C23 DOUB Y N 33 YO4 C24 C25 DOUB Y N 34 YO4 C25 C26 SING Y N 35 YO4 C26 C27 DOUB Y N 36 YO4 C10 H1 SING N N 37 YO4 C10 H2 SING N N 38 YO4 C14 H3 SING N N 39 YO4 C14 H4 SING N N 40 YO4 C20 H5 SING N N 41 YO4 C22 H6 SING N N 42 YO4 C22 H7 SING N N 43 YO4 C22 H8 SING N N 44 YO4 C23 H9 SING N N 45 YO4 C12 H10 SING N N 46 YO4 C12 H11 SING N N 47 YO4 C12 H12 SING N N 48 YO4 C13 H13 SING N N 49 YO4 C13 H14 SING N N 50 YO4 C13 H15 SING N N 51 YO4 C15 H16 SING N N 52 YO4 C15 H17 SING N N 53 YO4 C17 H18 SING N N 54 YO4 C17 H19 SING N N 55 YO4 C17 H20 SING N N 56 YO4 C24 H21 SING N N 57 YO4 C25 H22 SING N N 58 YO4 C26 H23 SING N N 59 YO4 C27 H24 SING N N 60 YO4 C4 H25 SING N N 61 YO4 C5 H26 SING N N 62 YO4 C5 H27 SING N N 63 YO4 C5 H28 SING N N 64 YO4 C9 H29 SING N N 65 YO4 C9 H30 SING N N 66 YO4 N1 H31 SING N N 67 YO4 O2 H32 SING N N 68 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YO4 SMILES ACDLabs 12.01 "O=C(O)c1ccccc1NC(C)c1cc(C)cc2c1OC(=C(C)C2=O)N1CCC(C)(C)CC1" YO4 InChI InChI 1.06 "InChI=1S/C27H32N2O4/c1-16-14-20(18(3)28-22-9-7-6-8-19(22)26(31)32)24-21(15-16)23(30)17(2)25(33-24)29-12-10-27(4,5)11-13-29/h6-9,14-15,18,28H,10-13H2,1-5H3,(H,31,32)/t18-/m1/s1" YO4 InChIKey InChI 1.06 WTFFQZJMEWAKGP-GOSISDBHSA-N YO4 SMILES_CANONICAL CACTVS 3.385 "C[C@@H](Nc1ccccc1C(O)=O)c2cc(C)cc3C(=O)C(=C(Oc23)N4CCC(C)(C)CC4)C" YO4 SMILES CACTVS 3.385 "C[CH](Nc1ccccc1C(O)=O)c2cc(C)cc3C(=O)C(=C(Oc23)N4CCC(C)(C)CC4)C" YO4 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc2c(c(c1)[C@@H](C)Nc3ccccc3C(=O)O)OC(=C(C2=O)C)N4CCC(CC4)(C)C" YO4 SMILES "OpenEye OEToolkits" 2.0.7 "Cc1cc2c(c(c1)C(C)Nc3ccccc3C(=O)O)OC(=C(C2=O)C)N4CCC(CC4)(C)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YO4 "SYSTEMATIC NAME" ACDLabs 12.01 "2-({(1R)-1-[2-(4,4-dimethylpiperidin-1-yl)-3,6-dimethyl-4-oxo-4H-1-benzopyran-8-yl]ethyl}amino)benzoic acid" YO4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-[[(1~{R})-1-[2-(4,4-dimethylpiperidin-1-yl)-3,6-dimethyl-4-oxidanylidene-chromen-8-yl]ethyl]amino]benzoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YO4 "Create component" 2023-12-07 RCSB YO4 "Initial release" 2024-03-20 RCSB #