data_YO8 # _chem_comp.id YO8 _chem_comp.name "2-[(2-tert-butyl-5-chloro-4-cyanophenoxy)methyl]-N-(1,1-dioxo-1lambda~6~-thietan-3-yl)-1-methyl-1H-imidazole-5-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H23 Cl N4 O4 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-19 _chem_comp.pdbx_modified_date 2024-12-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 450.939 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YO8 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7G3Q _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YO8 C10 C1 C 0 1 N N N N N N -10.945 8.557 42.228 -2.812 2.779 1.398 C10 YO8 1 YO8 C11 C2 C 0 1 N N N N N N -13.266 8.746 43.131 -2.453 2.644 -1.070 C11 YO8 2 YO8 C13 C3 C 0 1 Y N N N N N -12.371 5.163 45.338 -4.186 -1.113 0.148 C13 YO8 3 YO8 O14 O1 O 0 1 N N N N N N -12.881 7.408 45.780 -2.180 0.141 0.376 O14 YO8 4 YO8 C15 C4 C 0 1 N N N N N N -13.430 6.972 47.065 -1.517 -1.114 0.548 C15 YO8 5 YO8 C16 C5 C 0 1 Y N N N N N -13.819 8.126 47.878 -0.041 -0.879 0.748 C16 YO8 6 YO8 C18 C6 C 0 1 Y N N N N N -15.026 9.590 48.937 1.856 -0.520 1.715 C18 YO8 7 YO8 C19 C7 C 0 1 Y N N N N N -13.717 9.973 49.093 2.100 -0.596 0.373 C19 YO8 8 YO8 C20 C8 C 0 1 N N N N N N -13.122 11.099 49.839 3.400 -0.460 -0.294 C20 YO8 9 YO8 C22 C9 C 0 1 N N N N N N -13.372 12.878 51.393 5.769 0.112 -0.257 C22 YO8 10 YO8 C23 C10 C 0 1 N N N N N N -12.844 14.057 50.494 6.709 1.020 0.538 C23 YO8 11 YO8 C25 C11 C 0 1 N N N N N N -14.496 13.732 52.086 6.763 -1.042 -0.107 C25 YO8 12 YO8 CL1 CL1 CL 0 0 N N N N N N -11.941 2.743 44.850 -6.381 -2.677 -0.084 CL1 YO8 13 YO8 C2 C12 C 0 1 Y N N N N N -11.773 4.301 44.452 -5.551 -1.153 -0.048 C2 YO8 14 YO8 C3 C13 C 0 1 Y N N N N N -11.163 4.663 43.313 -6.265 0.038 -0.218 C3 YO8 15 YO8 C4 C14 C 0 1 N N N N N N -10.597 3.758 42.344 -7.682 0.003 -0.421 C4 YO8 16 YO8 N5 N1 N 0 1 N N N N N N -10.132 2.984 41.558 -8.806 -0.025 -0.583 N5 YO8 17 YO8 C6 C15 C 0 1 Y N N N N N -11.173 5.973 43.039 -5.591 1.262 -0.187 C6 YO8 18 YO8 C7 C16 C 0 1 Y N N N N N -11.757 6.888 43.843 -4.228 1.292 0.010 C7 YO8 19 YO8 C8 C17 C 0 1 N N N N N N -11.782 8.305 43.482 -3.501 2.611 0.043 C8 YO8 20 YO8 C9 C18 C 0 1 N N N N N N -11.107 9.238 44.580 -4.502 3.750 -0.165 C9 YO8 21 YO8 C12 C19 C 0 1 Y N N N N N -12.350 6.455 45.003 -3.523 0.106 0.183 C12 YO8 22 YO8 N17 N2 N 0 1 Y N N N N N -15.134 8.422 48.165 0.548 -0.698 1.902 N17 YO8 23 YO8 N21 N3 N 0 1 N N N N N N -13.925 11.854 50.570 4.495 -0.134 0.423 N21 YO8 24 YO8 S24 S1 S 0 1 N N N N N N -14.135 15.031 51.020 8.138 0.141 -0.153 S24 YO8 25 YO8 O26 O2 O 0 1 N N N N N N -13.466 16.109 51.700 8.457 0.562 -1.472 O26 YO8 26 YO8 O27 O3 O 0 1 N N N N N N -15.090 15.233 49.996 9.135 -0.137 0.820 O27 YO8 27 YO8 O28 O4 O 0 1 N N N N N N -11.960 11.441 49.800 3.490 -0.640 -1.494 O28 YO8 28 YO8 N29 N4 N 0 1 Y N N N N N -12.944 9.043 48.428 0.879 -0.828 -0.231 N29 YO8 29 YO8 C30 C20 C 0 1 N N N N N N -11.549 8.946 48.431 0.635 -0.988 -1.666 C30 YO8 30 YO8 H36 H1 H 0 1 N N N N N N -10.977 9.627 41.974 -2.099 1.968 1.547 H36 YO8 31 YO8 H37 H2 H 0 1 N N N N N N -9.904 8.256 42.416 -2.286 3.734 1.423 H37 YO8 32 YO8 H35 H3 H 0 1 N N N N N N -11.352 7.969 41.392 -3.559 2.756 2.192 H35 YO8 33 YO8 H40 H4 H 0 1 N N N N N N -13.278 9.812 42.860 -2.944 2.524 -2.036 H40 YO8 34 YO8 H38 H5 H 0 1 N N N N N N -13.635 8.149 42.284 -1.927 3.599 -1.046 H38 YO8 35 YO8 H39 H6 H 0 1 N N N N N N -13.913 8.582 44.005 -1.740 1.833 -0.922 H39 YO8 36 YO8 H41 H7 H 0 1 N N N N N N -12.831 4.816 46.252 -3.634 -2.032 0.280 H41 YO8 37 YO8 H43 H8 H 0 1 N N N N N N -14.314 6.342 46.885 -1.925 -1.624 1.420 H43 YO8 38 YO8 H42 H9 H 0 1 N N N N N N -12.668 6.390 47.605 -1.669 -1.730 -0.339 H42 YO8 39 YO8 H44 H10 H 0 1 N N N N N N -15.868 10.121 49.356 2.591 -0.347 2.487 H44 YO8 40 YO8 H46 H11 H 0 1 N N N N N N -12.613 12.530 52.109 5.636 0.431 -1.291 H46 YO8 41 YO8 H47 H12 H 0 1 N N N N N N -11.851 14.432 50.782 6.658 2.064 0.229 H47 YO8 42 YO8 H48 H13 H 0 1 N N N N N N -12.855 13.840 49.416 6.612 0.899 1.617 H48 YO8 43 YO8 H50 H14 H 0 1 N N N N N N -15.510 13.322 51.972 6.676 -1.561 0.847 H50 YO8 44 YO8 H49 H15 H 0 1 N N N N N N -14.307 13.952 53.147 6.757 -1.726 -0.956 H49 YO8 45 YO8 H31 H16 H 0 1 N N N N N N -10.692 6.314 42.134 -6.138 2.184 -0.318 H31 YO8 46 YO8 H33 H17 H 0 1 N N N N N N -11.157 10.287 44.252 -5.249 3.727 0.628 H33 YO8 47 YO8 H34 H18 H 0 1 N N N N N N -11.642 9.127 45.535 -3.976 4.705 -0.141 H34 YO8 48 YO8 H32 H19 H 0 1 N N N N N N -10.055 8.945 44.713 -4.993 3.630 -1.131 H32 YO8 49 YO8 H45 H20 H 0 1 N N N N N N -14.914 11.707 50.545 4.438 -0.063 1.388 H45 YO8 50 YO8 H51 H21 H 0 1 N N N N N N -11.121 9.822 48.940 0.517 -0.007 -2.127 H51 YO8 51 YO8 H53 H22 H 0 1 N N N N N N -11.246 8.031 48.961 1.479 -1.505 -2.124 H53 YO8 52 YO8 H52 H23 H 0 1 N N N N N N -11.182 8.908 47.395 -0.273 -1.572 -1.817 H52 YO8 53 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YO8 CL1 C2 SING N N 1 YO8 C2 C3 DOUB Y N 2 YO8 C2 C13 SING Y N 3 YO8 C3 C4 SING N N 4 YO8 C3 C6 SING Y N 5 YO8 C4 N5 TRIP N N 6 YO8 C6 C7 DOUB Y N 7 YO8 C7 C8 SING N N 8 YO8 C7 C12 SING Y N 9 YO8 C8 C9 SING N N 10 YO8 C8 C10 SING N N 11 YO8 C8 C11 SING N N 12 YO8 C12 C13 DOUB Y N 13 YO8 C12 O14 SING N N 14 YO8 O14 C15 SING N N 15 YO8 C15 C16 SING N N 16 YO8 C16 N17 DOUB Y N 17 YO8 C16 N29 SING Y N 18 YO8 N17 C18 SING Y N 19 YO8 C18 C19 DOUB Y N 20 YO8 C19 C20 SING N N 21 YO8 C19 N29 SING Y N 22 YO8 C20 N21 SING N N 23 YO8 C20 O28 DOUB N N 24 YO8 N21 C22 SING N N 25 YO8 C22 C23 SING N N 26 YO8 C22 C25 SING N N 27 YO8 C23 S24 SING N N 28 YO8 S24 C25 SING N N 29 YO8 S24 O26 DOUB N N 30 YO8 S24 O27 DOUB N N 31 YO8 N29 C30 SING N N 32 YO8 C10 H36 SING N N 33 YO8 C10 H37 SING N N 34 YO8 C10 H35 SING N N 35 YO8 C11 H40 SING N N 36 YO8 C11 H38 SING N N 37 YO8 C11 H39 SING N N 38 YO8 C13 H41 SING N N 39 YO8 C15 H43 SING N N 40 YO8 C15 H42 SING N N 41 YO8 C18 H44 SING N N 42 YO8 C22 H46 SING N N 43 YO8 C23 H47 SING N N 44 YO8 C23 H48 SING N N 45 YO8 C25 H50 SING N N 46 YO8 C25 H49 SING N N 47 YO8 C6 H31 SING N N 48 YO8 C9 H33 SING N N 49 YO8 C9 H34 SING N N 50 YO8 C9 H32 SING N N 51 YO8 N21 H45 SING N N 52 YO8 C30 H51 SING N N 53 YO8 C30 H53 SING N N 54 YO8 C30 H52 SING N N 55 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YO8 SMILES ACDLabs 12.01 "O=C(NC1CS(=O)(=O)C1)c1cnc(COc2cc(Cl)c(C#N)cc2C(C)(C)C)n1C" YO8 InChI InChI 1.06 "InChI=1S/C20H23ClN4O4S/c1-20(2,3)14-5-12(7-22)15(21)6-17(14)29-9-18-23-8-16(25(18)4)19(26)24-13-10-30(27,28)11-13/h5-6,8,13H,9-11H2,1-4H3,(H,24,26)" YO8 InChIKey InChI 1.06 RPMQOEHYFAZXFQ-UHFFFAOYSA-N YO8 SMILES_CANONICAL CACTVS 3.385 "Cn1c(COc2cc(Cl)c(cc2C(C)(C)C)C#N)ncc1C(=O)NC3C[S](=O)(=O)C3" YO8 SMILES CACTVS 3.385 "Cn1c(COc2cc(Cl)c(cc2C(C)(C)C)C#N)ncc1C(=O)NC3C[S](=O)(=O)C3" YO8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)(C)c1cc(c(cc1OCc2ncc(n2C)C(=O)NC3CS(=O)(=O)C3)Cl)C#N" YO8 SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)(C)c1cc(c(cc1OCc2ncc(n2C)C(=O)NC3CS(=O)(=O)C3)Cl)C#N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YO8 "SYSTEMATIC NAME" ACDLabs 12.01 "2-[(2-tert-butyl-5-chloro-4-cyanophenoxy)methyl]-N-(1,1-dioxo-1lambda~6~-thietan-3-yl)-1-methyl-1H-imidazole-5-carboxamide" YO8 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[1,1-bis(oxidanylidene)thietan-3-yl]-2-[(2-~{tert}-butyl-5-chloranyl-4-cyano-phenoxy)methyl]-3-methyl-imidazole-4-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YO8 "Create component" 2023-06-19 RCSB YO8 "Initial release" 2024-12-18 RCSB #