data_YO9 # _chem_comp.id YO9 _chem_comp.name "4-[(9-{4-[(E)-2-cyanoethenyl]-2,6-dimethylphenyl}-8-oxo-8,9-dihydro-7H-purin-2-yl)amino]benzonitrile" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H17 N7 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-12-06 _chem_comp.pdbx_modified_date 2023-01-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 407.427 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YO9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8FCC _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YO9 C01 C1 C 0 1 Y N N -12.457 -61.818 -14.344 -0.743 -2.507 -0.124 C01 YO9 1 YO9 C02 C2 C 0 1 Y N N -11.849 -62.461 -15.352 0.018 -1.341 0.029 C02 YO9 2 YO9 C04 C3 C 0 1 Y N N -10.013 -62.973 -14.035 -1.929 -0.123 0.144 C04 YO9 3 YO9 C06 C4 C 0 1 Y N N -11.787 -61.770 -13.112 -2.123 -2.405 -0.134 C06 YO9 4 YO9 C09 C5 C 0 1 Y N N -12.026 -64.413 -17.881 3.009 -0.302 -1.016 C09 YO9 5 YO9 C10 C6 C 0 1 Y N N -11.507 -64.857 -19.110 4.088 0.545 -0.904 C10 YO9 6 YO9 C11 C7 C 0 1 Y N N -11.159 -63.948 -20.125 4.619 0.836 0.357 C11 YO9 7 YO9 C12 C8 C 0 1 Y N N -11.308 -62.567 -19.930 4.050 0.262 1.500 C12 YO9 8 YO9 C13 C9 C 0 1 Y N N -11.815 -62.075 -18.726 2.971 -0.584 1.379 C13 YO9 9 YO9 C14 C10 C 0 1 Y N N -12.186 -62.999 -17.690 2.447 -0.870 0.122 C14 YO9 10 YO9 C15 C11 C 0 1 N N N -12.385 -65.501 -16.849 2.432 -0.610 -2.374 C15 YO9 11 YO9 C16 C12 C 0 1 N N N -11.945 -60.538 -18.610 2.357 -1.202 2.608 C16 YO9 12 YO9 C18 C13 C 0 1 N N N -10.644 -64.530 -21.369 5.772 1.740 0.482 C18 YO9 13 YO9 C19 C14 C 0 1 N N N -10.143 -65.768 -21.426 6.319 2.292 -0.621 C19 YO9 14 YO9 C20 C15 C 0 1 Y N N -8.127 -64.566 -14.664 -3.936 1.209 0.158 C20 YO9 15 YO9 C21 C16 C 0 1 Y N N -7.011 -65.176 -14.109 -4.613 0.382 -0.734 C21 YO9 16 YO9 C22 C17 C 0 1 Y N N -6.384 -66.195 -14.808 -5.981 0.477 -0.860 C22 YO9 17 YO9 C23 C18 C 0 1 Y N N -6.855 -66.600 -16.052 -6.689 1.405 -0.091 C23 YO9 18 YO9 C24 C19 C 0 1 Y N N -7.951 -65.989 -16.616 -6.006 2.234 0.804 C24 YO9 19 YO9 C25 C20 C 0 1 Y N N -8.578 -64.983 -15.912 -4.639 2.130 0.929 C25 YO9 20 YO9 C26 C21 C 0 1 N N N -6.210 -67.660 -16.781 -8.112 1.507 -0.220 C26 YO9 21 YO9 C27 C22 C 0 1 N N N -13.769 -61.729 -16.206 1.405 -3.062 -0.154 C27 YO9 22 YO9 C29 C23 C 0 1 N N N -9.686 -66.302 -22.654 7.442 3.172 -0.500 C29 YO9 23 YO9 N03 N1 N 0 1 Y N N -10.644 -63.044 -15.232 -0.605 -0.178 0.159 N03 YO9 24 YO9 N05 N2 N 0 1 Y N N -10.540 -62.346 -12.935 -2.676 -1.207 0.002 N05 YO9 25 YO9 N07 N3 N 0 1 N N N -13.633 -61.383 -14.893 0.158 -3.564 -0.233 N07 YO9 26 YO9 N08 N4 N 0 1 N N N -8.757 -63.566 -13.933 -2.552 1.109 0.283 N08 YO9 27 YO9 N17 N5 N 0 1 N N N -12.637 -62.436 -16.480 1.347 -1.725 0.004 N17 YO9 28 YO9 N30 N6 N 0 1 N N N -9.352 -66.717 -23.673 8.333 3.871 -0.403 N30 YO9 29 YO9 N31 N7 N 0 1 N N N -5.691 -68.496 -17.363 -9.241 1.587 -0.322 N31 YO9 30 YO9 O28 O1 O 0 1 N N N -14.746 -61.469 -16.932 2.429 -3.716 -0.213 O28 YO9 31 YO9 H1 H1 H 0 1 N N N -12.257 -61.270 -12.278 -2.739 -3.284 -0.251 H1 YO9 32 YO9 H2 H2 H 0 1 N N N -11.373 -65.915 -19.278 4.524 0.985 -1.789 H2 YO9 33 YO9 H3 H3 H 0 1 N N N -11.029 -61.881 -20.716 4.457 0.483 2.476 H3 YO9 34 YO9 H4 H4 H 0 1 N N N -11.511 -65.708 -16.214 1.658 0.119 -2.614 H4 YO9 35 YO9 H5 H5 H 0 1 N N N -13.219 -65.151 -16.222 3.222 -0.563 -3.124 H5 YO9 36 YO9 H6 H6 H 0 1 N N N -12.682 -66.421 -17.374 1.999 -1.611 -2.366 H6 YO9 37 YO9 H7 H7 H 0 1 N N N -12.937 -60.225 -18.969 1.571 -0.550 2.989 H7 YO9 38 YO9 H8 H8 H 0 1 N N N -11.824 -60.238 -17.559 1.932 -2.173 2.353 H8 YO9 39 YO9 H9 H9 H 0 1 N N N -11.166 -60.057 -19.220 3.125 -1.331 3.372 H9 YO9 40 YO9 H10 H10 H 0 1 N N N -10.671 -63.937 -22.271 6.181 1.962 1.457 H10 YO9 41 YO9 H11 H11 H 0 1 N N N -10.087 -66.365 -20.528 5.910 2.069 -1.596 H11 YO9 42 YO9 H12 H12 H 0 1 N N N -6.637 -64.861 -13.146 -4.065 -0.334 -1.328 H12 YO9 43 YO9 H13 H13 H 0 1 N N N -5.519 -66.681 -14.381 -6.506 -0.164 -1.552 H13 YO9 44 YO9 H14 H14 H 0 1 N N N -8.312 -66.291 -17.588 -6.550 2.952 1.399 H14 YO9 45 YO9 H15 H15 H 0 1 N N N -9.445 -64.504 -16.342 -4.110 2.769 1.620 H15 YO9 46 YO9 H16 H16 H 0 1 N N N -14.321 -60.865 -14.385 -0.073 -4.499 -0.347 H16 YO9 47 YO9 H17 H17 H 0 1 N N N -8.199 -63.201 -13.188 -2.024 1.902 0.468 H17 YO9 48 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YO9 N30 C29 TRIP N N 1 YO9 C29 C19 SING N N 2 YO9 C19 C18 DOUB N E 3 YO9 C18 C11 SING N N 4 YO9 C11 C12 DOUB Y N 5 YO9 C11 C10 SING Y N 6 YO9 C12 C13 SING Y N 7 YO9 C10 C09 DOUB Y N 8 YO9 C13 C16 SING N N 9 YO9 C13 C14 DOUB Y N 10 YO9 C09 C14 SING Y N 11 YO9 C09 C15 SING N N 12 YO9 C14 N17 SING N N 13 YO9 N31 C26 TRIP N N 14 YO9 O28 C27 DOUB N N 15 YO9 C26 C23 SING N N 16 YO9 C24 C23 DOUB Y N 17 YO9 C24 C25 SING Y N 18 YO9 N17 C27 SING N N 19 YO9 N17 C02 SING N N 20 YO9 C27 N07 SING N N 21 YO9 C23 C22 SING Y N 22 YO9 C25 C20 DOUB Y N 23 YO9 C02 N03 DOUB Y N 24 YO9 C02 C01 SING Y N 25 YO9 N03 C04 SING Y N 26 YO9 N07 C01 SING N N 27 YO9 C22 C21 DOUB Y N 28 YO9 C20 C21 SING Y N 29 YO9 C20 N08 SING N N 30 YO9 C01 C06 DOUB Y N 31 YO9 C04 N08 SING N N 32 YO9 C04 N05 DOUB Y N 33 YO9 C06 N05 SING Y N 34 YO9 C06 H1 SING N N 35 YO9 C10 H2 SING N N 36 YO9 C12 H3 SING N N 37 YO9 C15 H4 SING N N 38 YO9 C15 H5 SING N N 39 YO9 C15 H6 SING N N 40 YO9 C16 H7 SING N N 41 YO9 C16 H8 SING N N 42 YO9 C16 H9 SING N N 43 YO9 C18 H10 SING N N 44 YO9 C19 H11 SING N N 45 YO9 C21 H12 SING N N 46 YO9 C22 H13 SING N N 47 YO9 C24 H14 SING N N 48 YO9 C25 H15 SING N N 49 YO9 N07 H16 SING N N 50 YO9 N08 H17 SING N N 51 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YO9 SMILES ACDLabs 12.01 "N#Cc1ccc(cc1)Nc1ncc2NC(=O)N(c2n1)c1c(C)cc(\C=C\C#N)cc1C" YO9 InChI InChI 1.06 "InChI=1S/C23H17N7O/c1-14-10-17(4-3-9-24)11-15(2)20(14)30-21-19(28-23(30)31)13-26-22(29-21)27-18-7-5-16(12-25)6-8-18/h3-8,10-11,13H,1-2H3,(H,28,31)(H,26,27,29)/b4-3+" YO9 InChIKey InChI 1.06 NSCZUKITHKGKLS-ONEGZZNKSA-N YO9 SMILES_CANONICAL CACTVS 3.385 "Cc1cc(/C=C/C#N)cc(C)c1N2C(=O)Nc3cnc(Nc4ccc(cc4)C#N)nc23" YO9 SMILES CACTVS 3.385 "Cc1cc(C=CC#N)cc(C)c1N2C(=O)Nc3cnc(Nc4ccc(cc4)C#N)nc23" YO9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc(cc(c1N2c3c(cnc(n3)Nc4ccc(cc4)C#N)NC2=O)C)/C=C/C#N" YO9 SMILES "OpenEye OEToolkits" 2.0.7 "Cc1cc(cc(c1N2c3c(cnc(n3)Nc4ccc(cc4)C#N)NC2=O)C)C=CC#N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YO9 "SYSTEMATIC NAME" ACDLabs 12.01 "4-[(9-{4-[(E)-2-cyanoethenyl]-2,6-dimethylphenyl}-8-oxo-8,9-dihydro-7H-purin-2-yl)amino]benzonitrile" YO9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "4-[[9-[4-[(~{E})-2-cyanoethenyl]-2,6-dimethyl-phenyl]-8-oxidanylidene-7~{H}-purin-2-yl]amino]benzenecarbonitrile" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YO9 "Create component" 2022-12-06 RCSB YO9 "Initial release" 2023-02-01 RCSB #