data_YOD # _chem_comp.id YOD _chem_comp.name "(1R,3S,5S,7S)-N-[(1r,4R)-4-aminocyclohexyl]-3-[(methylsulfanyl)methyl]-5-phenyladamantane-1-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H36 N2 O S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-03-17 _chem_comp.pdbx_modified_date 2021-11-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 412.631 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YOD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7LYD _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YOD C21 C1 C 0 1 N N N -42.934 18.173 -7.637 3.689 0.515 0.183 C21 YOD 1 YOD C22 C2 C 0 1 N N N -43.430 19.129 -6.537 4.618 0.059 1.311 C22 YOD 2 YOD C23 C3 C 0 1 N N N -42.936 20.568 -6.778 6.065 0.397 0.947 C23 YOD 3 YOD C24 C4 C 0 1 N N N -41.405 20.606 -6.898 6.446 -0.322 -0.350 C24 YOD 4 YOD C26 C5 C 0 1 N N N -40.981 19.725 -8.086 5.517 0.134 -1.477 C26 YOD 5 YOD C27 C6 C 0 1 N N N -41.413 18.266 -7.837 4.070 -0.203 -1.113 C27 YOD 6 YOD C11 C7 C 0 1 Y N N -46.767 12.159 -9.513 -2.185 -2.637 -0.084 C11 YOD 7 YOD C13 C8 C 0 1 Y N N -47.138 11.727 -11.884 -3.474 -4.209 -1.349 C13 YOD 8 YOD C14 C9 C 0 1 Y N N -48.383 11.188 -11.611 -2.741 -5.247 -0.804 C14 YOD 9 YOD C29 C10 C 0 1 N N N -45.311 14.682 -6.251 -1.081 1.514 -0.389 C29 YOD 10 YOD C15 C11 C 0 1 Y N N -48.816 11.130 -10.291 -1.728 -4.980 0.096 C15 YOD 11 YOD C10 C12 C 0 1 N N N -44.635 11.807 -8.174 -2.083 -1.054 1.822 C10 YOD 12 YOD C12 C13 C 0 1 Y N N -46.344 12.205 -10.841 -3.196 -2.904 -0.989 C12 YOD 13 YOD C01 C14 C 0 1 N N N -46.152 11.313 -2.622 -4.317 4.790 -1.254 C01 YOD 14 YOD C03 C15 C 0 1 N N N -46.494 13.360 -4.545 -3.475 2.123 -0.766 C03 YOD 15 YOD C04 C16 C 0 1 N N S -45.747 13.245 -5.882 -2.528 1.177 -0.025 C04 YOD 16 YOD C05 C17 C 0 1 N N N -44.467 12.397 -5.740 -2.725 1.337 1.484 C05 YOD 17 YOD C06 C18 C 0 1 N N S -43.717 12.387 -7.085 -1.779 0.391 2.225 C06 YOD 18 YOD C07 C19 C 0 1 N N N -43.289 13.815 -7.486 -0.332 0.728 1.861 C07 YOD 19 YOD C08 C20 C 0 1 N N N -46.648 12.662 -6.998 -2.832 -0.268 -0.428 C08 YOD 20 YOD C09 C21 C 0 1 N N S -45.895 12.677 -8.358 -1.886 -1.214 0.313 C09 YOD 21 YOD C16 C22 C 0 1 Y N N -48.028 11.614 -9.263 -1.453 -3.675 0.461 C16 YOD 22 YOD C17 C23 C 0 1 N N N -45.472 14.123 -8.685 -0.439 -0.877 -0.051 C17 YOD 23 YOD C18 C24 C 0 1 N N R -44.544 14.692 -7.591 -0.135 0.568 0.353 C18 YOD 24 YOD C19 C25 C 0 1 N N N -44.279 16.147 -7.961 1.291 0.900 -0.006 C19 YOD 25 YOD N20 N1 N 0 1 N N N -43.270 16.780 -7.328 2.303 0.192 0.532 N20 YOD 26 YOD N25 N2 N 0 1 N N N -40.959 21.991 -7.131 7.836 0.002 -0.699 N25 YOD 27 YOD O28 O1 O 0 1 N N N -44.959 16.706 -8.820 1.527 1.805 -0.778 O28 YOD 28 YOD S02 S1 S 0 1 N N N -47.367 11.766 -3.993 -3.114 3.835 -0.288 S02 YOD 29 YOD H1 H1 H 0 1 N N N -43.421 18.458 -8.581 3.787 1.592 0.045 H1 YOD 30 YOD H2 H2 H 0 1 N N N -44.530 19.125 -6.529 4.347 0.571 2.234 H2 YOD 31 YOD H3 H3 H 0 1 N N N -43.055 18.780 -5.564 4.520 -1.017 1.449 H3 YOD 32 YOD H4 H4 H 0 1 N N N -43.248 21.202 -5.935 6.164 1.473 0.808 H4 YOD 33 YOD H5 H5 H 0 1 N N N -43.380 20.951 -7.709 6.727 0.072 1.750 H5 YOD 34 YOD H6 H6 H 0 1 N N N -40.957 20.212 -5.974 6.348 -1.398 -0.211 H6 YOD 35 YOD H7 H7 H 0 1 N N N -39.888 19.767 -8.200 5.615 1.211 -1.616 H7 YOD 36 YOD H8 H8 H 0 1 N N N -41.460 20.096 -9.004 5.788 -0.378 -2.400 H8 YOD 37 YOD H9 H9 H 0 1 N N N -41.125 17.652 -8.703 3.972 -1.280 -0.974 H9 YOD 38 YOD H10 H10 H 0 1 N N N -40.907 17.889 -6.936 3.408 0.121 -1.916 H10 YOD 39 YOD H11 H11 H 0 1 N N N -46.782 11.778 -12.902 -4.266 -4.418 -2.053 H11 YOD 40 YOD H12 H12 H 0 1 N N N -49.008 10.818 -12.410 -2.959 -6.267 -1.086 H12 YOD 41 YOD H13 H13 H 0 1 N N N -44.658 15.076 -5.458 -0.941 1.400 -1.464 H13 YOD 42 YOD H14 H14 H 0 1 N N N -46.204 15.318 -6.341 -0.865 2.543 -0.101 H14 YOD 43 YOD H15 H15 H 0 1 N N N -49.781 10.701 -10.066 -1.155 -5.791 0.522 H15 YOD 44 YOD H16 H16 H 0 1 N N N -44.939 10.791 -7.884 -1.409 -1.728 2.350 H16 YOD 45 YOD H17 H17 H 0 1 N N N -44.084 11.767 -9.125 -3.114 -1.294 2.081 H17 YOD 46 YOD H18 H18 H 0 1 N N N -45.374 12.622 -11.069 -3.768 -2.092 -1.414 H18 YOD 47 YOD H19 H19 H 0 1 N N N -46.474 10.378 -2.140 -4.155 4.609 -2.316 H19 YOD 48 YOD H20 H20 H 0 1 N N N -45.148 11.177 -3.052 -5.327 4.483 -0.982 H20 YOD 49 YOD H21 H21 H 0 1 N N N -46.125 12.120 -1.875 -4.191 5.852 -1.043 H21 YOD 50 YOD H22 H22 H 0 1 N N N -45.767 13.641 -3.768 -3.334 2.009 -1.841 H22 YOD 51 YOD H23 H23 H 0 1 N N N -47.252 14.151 -4.642 -4.506 1.883 -0.507 H23 YOD 52 YOD H24 H24 H 0 1 N N N -44.736 11.368 -5.461 -2.509 2.366 1.771 H24 YOD 53 YOD H25 H25 H 0 1 N N N -43.822 12.831 -4.962 -3.757 1.097 1.743 H25 YOD 54 YOD H26 H26 H 0 1 N N N -42.821 11.755 -6.994 -1.920 0.505 3.300 H26 YOD 55 YOD H27 H27 H 0 1 N N N -42.774 13.788 -8.457 -0.115 1.757 2.149 H27 YOD 56 YOD H28 H28 H 0 1 N N N -42.612 14.227 -6.723 0.342 0.054 2.390 H28 YOD 57 YOD H29 H29 H 0 1 N N N -47.562 13.269 -7.082 -3.863 -0.508 -0.169 H29 YOD 58 YOD H30 H30 H 0 1 N N N -46.918 11.626 -6.743 -2.692 -0.382 -1.503 H30 YOD 59 YOD H31 H31 H 0 1 N N N -48.395 11.570 -8.248 -0.666 -3.467 1.171 H31 YOD 60 YOD H32 H32 H 0 1 N N N -44.940 14.133 -9.648 0.235 -1.551 0.478 H32 YOD 61 YOD H33 H33 H 0 1 N N N -46.371 14.753 -8.757 -0.298 -0.991 -1.125 H33 YOD 62 YOD H34 H34 H 0 1 N N N -42.741 16.290 -6.635 2.115 -0.532 1.150 H34 YOD 63 YOD H35 H35 H 0 1 N N N -41.234 22.565 -6.359 8.111 -0.460 -1.552 H35 YOD 64 YOD H36 H36 H 0 1 N N N -39.963 22.010 -7.222 7.967 1.000 -0.770 H36 YOD 65 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YOD C13 C14 DOUB Y N 1 YOD C13 C12 SING Y N 2 YOD C14 C15 SING Y N 3 YOD C12 C11 DOUB Y N 4 YOD C15 C16 DOUB Y N 5 YOD C11 C16 SING Y N 6 YOD C11 C09 SING N N 7 YOD O28 C19 DOUB N N 8 YOD C17 C09 SING N N 9 YOD C17 C18 SING N N 10 YOD C09 C10 SING N N 11 YOD C09 C08 SING N N 12 YOD C10 C06 SING N N 13 YOD C26 C27 SING N N 14 YOD C26 C24 SING N N 15 YOD C19 C18 SING N N 16 YOD C19 N20 SING N N 17 YOD C27 C21 SING N N 18 YOD C21 N20 SING N N 19 YOD C21 C22 SING N N 20 YOD C18 C07 SING N N 21 YOD C18 C29 SING N N 22 YOD C07 C06 SING N N 23 YOD N25 C24 SING N N 24 YOD C06 C05 SING N N 25 YOD C08 C04 SING N N 26 YOD C24 C23 SING N N 27 YOD C23 C22 SING N N 28 YOD C29 C04 SING N N 29 YOD C04 C05 SING N N 30 YOD C04 C03 SING N N 31 YOD C03 S02 SING N N 32 YOD S02 C01 SING N N 33 YOD C21 H1 SING N N 34 YOD C22 H2 SING N N 35 YOD C22 H3 SING N N 36 YOD C23 H4 SING N N 37 YOD C23 H5 SING N N 38 YOD C24 H6 SING N N 39 YOD C26 H7 SING N N 40 YOD C26 H8 SING N N 41 YOD C27 H9 SING N N 42 YOD C27 H10 SING N N 43 YOD C13 H11 SING N N 44 YOD C14 H12 SING N N 45 YOD C29 H13 SING N N 46 YOD C29 H14 SING N N 47 YOD C15 H15 SING N N 48 YOD C10 H16 SING N N 49 YOD C10 H17 SING N N 50 YOD C12 H18 SING N N 51 YOD C01 H19 SING N N 52 YOD C01 H20 SING N N 53 YOD C01 H21 SING N N 54 YOD C03 H22 SING N N 55 YOD C03 H23 SING N N 56 YOD C05 H24 SING N N 57 YOD C05 H25 SING N N 58 YOD C06 H26 SING N N 59 YOD C07 H27 SING N N 60 YOD C07 H28 SING N N 61 YOD C08 H29 SING N N 62 YOD C08 H30 SING N N 63 YOD C16 H31 SING N N 64 YOD C17 H32 SING N N 65 YOD C17 H33 SING N N 66 YOD N20 H34 SING N N 67 YOD N25 H35 SING N N 68 YOD N25 H36 SING N N 69 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YOD SMILES ACDLabs 12.01 "O=C(NC1CCC(N)CC1)C12CC3CC(CC(CSC)(C3)C1)(C2)c1ccccc1" YOD InChI InChI 1.03 "InChI=1S/C25H36N2OS/c1-29-17-23-11-18-12-24(14-23,19-5-3-2-4-6-19)16-25(13-18,15-23)22(28)27-21-9-7-20(26)8-10-21/h2-6,18,20-21H,7-17,26H2,1H3,(H,27,28)/t18-,20-,21-,23-,24+,25-/m0/s1" YOD InChIKey InChI 1.03 DETLZYCOWYAPEH-ONOIFOFISA-N YOD SMILES_CANONICAL CACTVS 3.385 "CSC[C@]12C[C@@H]3C[C@](C1)(C[C@@](C3)(C2)c4ccccc4)C(=O)N[C@H]5CC[C@H](N)CC5" YOD SMILES CACTVS 3.385 "CSC[C]12C[CH]3C[C](C1)(C[C](C3)(C2)c4ccccc4)C(=O)N[CH]5CC[CH](N)CC5" YOD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CSC[C@@]12C[C@H]3C[C@@](C1)(C[C@](C3)(C2)C(=O)NC4CCC(CC4)N)c5ccccc5" YOD SMILES "OpenEye OEToolkits" 2.0.7 "CSCC12CC3CC(C1)(CC(C3)(C2)C(=O)NC4CCC(CC4)N)c5ccccc5" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YOD "SYSTEMATIC NAME" ACDLabs 12.01 "(1R,3S,5S,7S)-N-[(1r,4R)-4-aminocyclohexyl]-3-[(methylsulfanyl)methyl]-5-phenyladamantane-1-carboxamide" YOD "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(1~{R},3~{S},5~{S},7~{S})-~{N}-(4-azanylcyclohexyl)-3-(methylsulfanylmethyl)-5-phenyl-adamantane-1-carboxamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YOD "Create component" 2021-03-17 RCSB YOD "Initial release" 2021-11-24 RCSB ##