data_YOG # _chem_comp.id YOG _chem_comp.name "1,3-dihydroxypropan-2-yl (9Z)-octadec-9-enoate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H40 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-08-27 _chem_comp.pdbx_modified_date 2021-03-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 356.540 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YOG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7JWR _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YOG O01 O1 O 0 1 N N N 11.379 6.664 -4.821 -6.998 -0.770 -0.412 O01 YOG 1 YOG O02 O2 O 0 1 N N N 12.016 4.608 -5.184 -6.239 1.112 0.462 O02 YOG 2 YOG O03 O3 O 0 1 N N N 9.475 8.348 -4.252 -9.326 -2.421 -0.846 O03 YOG 3 YOG O04 O4 O 0 1 N N N 7.837 6.293 -5.109 -8.555 -2.380 1.409 O04 YOG 4 YOG C05 C1 C 0 1 N N N 16.663 6.435 -6.150 -1.302 1.723 -0.139 C05 YOG 5 YOG C06 C2 C 0 1 N N N 18.047 6.147 -5.647 0.128 1.405 -0.580 C06 YOG 6 YOG C07 C3 C 0 1 N N N 20.408 7.814 -10.583 8.233 -0.182 0.042 C07 YOG 7 YOG C08 C4 C 0 1 N N N 20.776 6.871 -9.497 6.785 -0.001 0.501 C08 YOG 8 YOG C09 C5 C 0 1 N N N 15.609 5.624 -5.468 -2.234 0.590 -0.575 C09 YOG 9 YOG C10 C6 C 0 1 N N N 18.925 7.828 -10.842 8.658 -1.636 0.258 C10 YOG 10 YOG C11 C7 C 0 1 N N N 18.694 4.864 -6.193 1.060 2.537 -0.143 C11 YOG 11 YOG C12 C8 C 0 1 N N N 21.546 5.655 -9.987 6.359 1.452 0.285 C12 YOG 12 YOG C13 C9 C 0 1 N N N 14.441 5.367 -6.353 -3.664 0.908 -0.134 C13 YOG 13 YOG C14 C10 C 0 1 N N N 18.164 8.807 -9.990 10.107 -1.817 -0.200 C14 YOG 14 YOG C15 C11 C 0 1 N N N 20.185 5.058 -6.504 2.490 2.220 -0.585 C15 YOG 15 YOG C16 C12 C 0 1 N N N 22.338 5.032 -8.870 4.911 1.633 0.743 C16 YOG 16 YOG C17 C13 C 0 1 N N N 16.795 9.127 -10.573 10.533 -3.270 0.016 C17 YOG 17 YOG C18 C14 C 0 1 N N N 13.379 6.363 -6.147 -4.595 -0.224 -0.570 C18 YOG 18 YOG C19 C15 C 0 1 N N N 20.814 3.903 -7.179 3.408 3.335 -0.155 C19 YOG 19 YOG C20 C16 C 0 1 N N N 21.703 3.891 -8.182 4.491 3.065 0.530 C20 YOG 20 YOG C21 C17 C 0 1 N N N 15.941 7.899 -10.813 11.981 -3.451 -0.443 C21 YOG 21 YOG C22 C18 C 0 1 N N N 12.225 5.791 -5.358 -6.004 0.089 -0.136 C22 YOG 22 YOG C23 C19 C 0 1 N N N 10.108 6.165 -4.407 -8.330 -0.404 0.037 C23 YOG 23 YOG C24 C20 C 0 1 N N N 9.545 7.177 -3.486 -9.370 -0.994 -0.917 C24 YOG 24 YOG C25 C21 C 0 1 N N N 9.155 6.064 -5.606 -8.561 -0.951 1.446 C25 YOG 25 YOG H031 H1 H 0 0 N N N 9.119 9.052 -3.723 -9.961 -2.863 -1.426 H031 YOG 26 YOG H041 H2 H 0 0 N N N 7.214 6.239 -5.824 -8.696 -2.796 2.270 H041 YOG 27 YOG H052 H3 H 0 0 N N N 16.446 7.501 -5.985 -1.334 1.822 0.946 H052 YOG 28 YOG H051 H4 H 0 0 N N N 16.630 6.216 -7.228 -1.625 2.657 -0.599 H051 YOG 29 YOG H062 H5 H 0 0 N N N 17.999 6.063 -4.551 0.451 0.471 -0.120 H062 YOG 30 YOG H061 H6 H 0 0 N N N 18.691 6.995 -5.922 0.160 1.306 -1.665 H061 YOG 31 YOG H071 H7 H 0 0 N N N 20.926 7.513 -11.505 8.313 0.066 -1.016 H071 YOG 32 YOG H072 H8 H 0 0 N N N 20.728 8.827 -10.297 8.882 0.476 0.620 H072 YOG 33 YOG H082 H9 H 0 0 N N N 21.399 7.407 -8.766 6.136 -0.660 -0.077 H082 YOG 34 YOG H081 H10 H 0 0 N N N 19.853 6.525 -9.008 6.705 -0.250 1.559 H081 YOG 35 YOG H092 H11 H 0 0 N N N 15.265 6.168 -4.576 -2.201 0.491 -1.660 H092 YOG 36 YOG H091 H12 H 0 0 N N N 16.044 4.660 -5.165 -1.911 -0.344 -0.115 H091 YOG 37 YOG H102 H13 H 0 0 N N N 18.761 8.088 -11.898 8.579 -1.884 1.317 H102 YOG 38 YOG H101 H14 H 0 0 N N N 18.530 6.820 -10.647 8.010 -2.294 -0.319 H101 YOG 39 YOG H111 H15 H 0 0 N N N 18.174 4.570 -7.117 0.737 3.471 -0.603 H111 YOG 40 YOG H112 H16 H 0 0 N N N 18.589 4.066 -5.443 1.028 2.637 0.942 H112 YOG 41 YOG H122 H17 H 0 0 N N N 20.835 4.914 -10.381 7.008 2.111 0.862 H122 YOG 42 YOG H121 H18 H 0 0 N N N 22.235 5.964 -10.787 6.439 1.701 -0.774 H121 YOG 43 YOG H132 H19 H 0 0 N N N 14.040 4.366 -6.134 -3.696 1.007 0.951 H132 YOG 44 YOG H131 H20 H 0 0 N N N 14.771 5.408 -7.401 -3.987 1.842 -0.594 H131 YOG 45 YOG H141 H21 H 0 0 N N N 18.031 8.376 -8.987 10.187 -1.569 -1.259 H141 YOG 46 YOG H142 H22 H 0 0 N N N 18.744 9.738 -9.915 10.756 -1.158 0.377 H142 YOG 47 YOG H152 H23 H 0 0 N N N 20.715 5.236 -5.557 2.813 1.286 -0.125 H152 YOG 48 YOG H151 H24 H 0 0 N N N 20.291 5.939 -7.155 2.522 2.121 -1.669 H151 YOG 49 YOG H162 H25 H 0 0 N N N 23.293 4.682 -9.289 4.262 0.975 0.166 H162 YOG 50 YOG H161 H26 H 0 0 N N N 22.531 5.812 -8.119 4.831 1.385 1.802 H161 YOG 51 YOG H171 H27 H 0 0 N N N 16.937 9.646 -11.533 10.453 -3.519 1.074 H171 YOG 52 YOG H172 H28 H 0 0 N N N 16.264 9.789 -9.873 9.884 -3.929 -0.562 H172 YOG 53 YOG H182 H29 H 0 0 N N N 13.796 7.221 -5.599 -4.563 -0.324 -1.655 H182 YOG 54 YOG H181 H30 H 0 0 N N N 13.010 6.699 -7.127 -4.272 -1.158 -0.110 H181 YOG 55 YOG H191 H31 H 0 0 N N N 20.515 2.932 -6.812 3.173 4.357 -0.412 H191 YOG 56 YOG H201 H32 H 0 0 N N N 21.994 2.913 -8.535 5.084 3.868 0.943 H201 YOG 57 YOG H211 H33 H 0 0 N N N 14.971 8.203 -11.233 12.061 -3.203 -1.501 H211 YOG 58 YOG H212 H34 H 0 0 N N N 16.453 7.229 -11.520 12.630 -2.793 0.135 H212 YOG 59 YOG H213 H35 H 0 0 N N N 15.780 7.373 -9.861 12.284 -4.487 -0.289 H213 YOG 60 YOG H231 H36 H 0 0 N N N 10.196 5.188 -3.910 -8.423 0.682 0.049 H231 YOG 61 YOG H242 H37 H 0 0 N N N 8.544 6.876 -3.143 -9.151 -0.674 -1.936 H242 YOG 62 YOG H241 H38 H 0 0 N N N 10.203 7.320 -2.616 -10.363 -0.646 -0.633 H241 YOG 63 YOG H251 H39 H 0 0 N N N 9.220 5.063 -6.058 -9.525 -0.602 1.818 H251 YOG 64 YOG H252 H40 H 0 0 N N N 9.413 6.824 -6.359 -7.768 -0.601 2.107 H252 YOG 65 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YOG C10 C07 SING N N 1 YOG C10 C14 SING N N 2 YOG C21 C17 SING N N 3 YOG C07 C08 SING N N 4 YOG C17 C14 SING N N 5 YOG C12 C08 SING N N 6 YOG C12 C16 SING N N 7 YOG C16 C20 SING N N 8 YOG C20 C19 DOUB N Z 9 YOG C19 C15 SING N N 10 YOG C15 C11 SING N N 11 YOG C13 C18 SING N N 12 YOG C13 C09 SING N N 13 YOG C11 C06 SING N N 14 YOG C05 C06 SING N N 15 YOG C05 C09 SING N N 16 YOG C18 C22 SING N N 17 YOG C25 O04 SING N N 18 YOG C25 C23 SING N N 19 YOG C22 O02 DOUB N N 20 YOG C22 O01 SING N N 21 YOG O01 C23 SING N N 22 YOG C23 C24 SING N N 23 YOG O03 C24 SING N N 24 YOG O03 H031 SING N N 25 YOG O04 H041 SING N N 26 YOG C05 H052 SING N N 27 YOG C05 H051 SING N N 28 YOG C06 H062 SING N N 29 YOG C06 H061 SING N N 30 YOG C07 H071 SING N N 31 YOG C07 H072 SING N N 32 YOG C08 H082 SING N N 33 YOG C08 H081 SING N N 34 YOG C09 H092 SING N N 35 YOG C09 H091 SING N N 36 YOG C10 H102 SING N N 37 YOG C10 H101 SING N N 38 YOG C11 H111 SING N N 39 YOG C11 H112 SING N N 40 YOG C12 H122 SING N N 41 YOG C12 H121 SING N N 42 YOG C13 H132 SING N N 43 YOG C13 H131 SING N N 44 YOG C14 H141 SING N N 45 YOG C14 H142 SING N N 46 YOG C15 H152 SING N N 47 YOG C15 H151 SING N N 48 YOG C16 H162 SING N N 49 YOG C16 H161 SING N N 50 YOG C17 H171 SING N N 51 YOG C17 H172 SING N N 52 YOG C18 H182 SING N N 53 YOG C18 H181 SING N N 54 YOG C19 H191 SING N N 55 YOG C20 H201 SING N N 56 YOG C21 H211 SING N N 57 YOG C21 H212 SING N N 58 YOG C21 H213 SING N N 59 YOG C23 H231 SING N N 60 YOG C24 H242 SING N N 61 YOG C24 H241 SING N N 62 YOG C25 H251 SING N N 63 YOG C25 H252 SING N N 64 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YOG SMILES ACDLabs 12.01 "O(C(CO)CO)C(=O)CCCCCCC[C@H]=CCCCCCCCC" YOG InChI InChI 1.03 "InChI=1S/C21H40O4/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-21(24)25-20(18-22)19-23/h9-10,20,22-23H,2-8,11-19H2,1H3/b10-9-" YOG InChIKey InChI 1.03 UPWGQKDVAURUGE-KTKRTIGZSA-N YOG SMILES_CANONICAL CACTVS 3.385 "CCCCCCCC\C=C/CCCCCCCC(=O)OC(CO)CO" YOG SMILES CACTVS 3.385 "CCCCCCCCC=CCCCCCCCC(=O)OC(CO)CO" YOG SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCCCC/C=C\CCCCCCCC(=O)OC(CO)CO" YOG SMILES "OpenEye OEToolkits" 2.0.7 "CCCCCCCCC=CCCCCCCCC(=O)OC(CO)CO" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YOG "SYSTEMATIC NAME" ACDLabs 12.01 "1,3-dihydroxypropan-2-yl (9Z)-octadec-9-enoate" YOG "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "1,3-bis(oxidanyl)propan-2-yl (~{Z})-octadec-9-enoate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YOG "Create component" 2020-08-27 RCSB YOG "Initial release" 2021-03-10 RCSB ##