data_YOI # _chem_comp.id YOI _chem_comp.name "(2-{[(2R)-4,6-dichloro-2,3-dihydro-1H-inden-2-yl]amino}pyrimidin-5-yl)(6-oxa-1-azaspiro[3.3]heptan-1-yl)methanone" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H18 Cl2 N4 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-19 _chem_comp.pdbx_modified_date 2024-12-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 405.278 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YOI _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7G3P _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YOI C10 C1 C 0 1 Y N N N N N -14.175 9.861 48.517 3.241 -0.892 -0.548 C10 YOI 1 YOI C11 C2 C 0 1 Y N N N N N -13.038 9.273 48.064 2.316 -0.104 0.149 C11 YOI 2 YOI C13 C3 C 0 1 N N N N N N -14.102 11.200 49.208 4.687 -0.608 -0.470 C13 YOI 3 YOI C15 C4 C 0 1 N N N N N N -16.293 12.249 47.890 4.529 1.179 1.423 C15 YOI 4 YOI C16 C5 C 0 1 N N N N N N -16.753 13.497 48.735 5.938 1.274 2.041 C16 YOI 5 YOI C17 C6 C 0 1 N N N N N N -15.302 13.465 49.348 6.452 0.934 0.643 C17 YOI 6 YOI C18 C7 C 0 1 N N N N N N -14.864 13.987 50.753 7.750 0.153 0.436 C18 YOI 7 YOI C20 C8 C 0 1 N N N N N N -14.175 14.403 48.768 7.043 2.005 -0.274 C20 YOI 8 YOI C22 C9 C 0 1 N N N N N N -13.422 4.265 45.505 -2.199 0.318 -0.925 C22 YOI 9 YOI C23 C10 C 0 1 Y N N N N N -12.449 4.128 44.369 -3.645 0.519 -0.527 C23 YOI 10 YOI C24 C11 C 0 1 Y N N N N N -11.874 2.927 43.944 -4.497 1.587 -0.753 C24 YOI 11 YOI C25 C12 C 0 1 Y N N N N N -10.959 3.094 42.896 -5.799 1.549 -0.288 C25 YOI 12 YOI C27 C13 C 0 1 Y N N N N N -10.632 4.260 42.332 -6.253 0.440 0.403 C27 YOI 13 YOI C1 C14 C 0 1 Y N N N N N -11.234 5.423 42.808 -5.403 -0.627 0.629 C1 YOI 14 YOI CL2 CL1 CL 0 0 N N N N N N -10.909 7.002 42.063 -5.973 -2.018 1.496 CL2 YOI 15 YOI C3 C15 C 0 1 Y N N N N N -12.132 5.335 43.826 -4.098 -0.589 0.164 C3 YOI 16 YOI C4 C16 C 0 1 N N N N N N -12.810 6.491 44.540 -2.987 -1.611 0.278 C4 YOI 17 YOI C5 C17 C 0 1 N N S N N N -13.229 5.767 45.841 -1.690 -0.833 -0.031 C5 YOI 18 YOI N6 N1 N 0 1 N N N N N N -14.418 6.380 46.456 -0.738 -1.676 -0.758 N6 YOI 19 YOI C7 C18 C 0 1 Y N N N N N -14.321 7.535 47.158 0.613 -1.408 -0.690 C7 YOI 20 YOI N8 N2 N 0 1 Y N N N N N -15.571 8.066 47.677 1.459 -2.184 -1.355 N8 YOI 21 YOI C9 C19 C 0 1 Y N N N N N -15.408 9.228 48.299 2.759 -1.959 -1.316 C9 YOI 22 YOI N12 N3 N 0 1 Y N N N N N -13.074 8.092 47.354 1.031 -0.391 0.053 N12 YOI 23 YOI N14 N4 N 0 1 N N N N N N -15.241 12.016 49.073 5.144 0.333 0.379 N14 YOI 24 YOI O19 O1 O 0 1 N N N N N N -13.744 14.658 50.147 8.320 1.433 0.087 O19 YOI 25 YOI O21 O2 O 0 1 N N N N N N -13.088 11.574 49.752 5.466 -1.223 -1.173 O21 YOI 26 YOI CL26 CL2 CL 0 0 N N N N N N -10.283 1.621 42.267 -6.862 2.891 -0.573 CL26 YOI 27 YOI H33 H1 H 0 1 N N N N N N -12.085 9.741 48.264 2.648 0.725 0.755 H33 YOI 28 YOI H35 H2 H 0 1 N N N N N N -15.852 12.483 46.910 3.810 0.650 2.049 H35 YOI 29 YOI H34 H3 H 0 1 N N N N N N -17.049 11.458 47.772 4.148 2.131 1.051 H34 YOI 30 YOI H37 H4 H 0 1 N N N N N N -16.991 14.396 48.147 6.205 2.276 2.377 H37 YOI 31 YOI H36 H5 H 0 1 N N N N N N -17.565 13.301 49.450 6.144 0.504 2.785 H36 YOI 32 YOI H38 H6 H 0 1 N N N N N N -15.590 14.663 51.229 8.158 -0.278 1.351 H38 YOI 33 YOI H39 H7 H 0 1 N N N N N N -14.584 13.193 51.461 7.713 -0.555 -0.392 H39 YOI 34 YOI H41 H8 H 0 1 N N N N N N -13.429 13.888 48.145 6.784 1.879 -1.325 H41 YOI 35 YOI H40 H9 H 0 1 N N N N N N -14.549 15.290 48.235 6.896 3.024 0.084 H40 YOI 36 YOI H42 H10 H 0 1 N N N N N N -13.153 3.619 46.353 -2.131 0.038 -1.977 H42 YOI 37 YOI H43 H11 H 0 1 N N N N N N -14.453 4.046 45.189 -1.625 1.225 -0.739 H43 YOI 38 YOI H44 H12 H 0 1 N N N N N N -12.111 1.967 44.379 -4.143 2.453 -1.293 H44 YOI 39 YOI H45 H13 H 0 1 N N N N N N -9.916 4.300 41.524 -7.269 0.409 0.767 H45 YOI 40 YOI H28 H14 H 0 1 N N N N N N -12.113 7.319 44.736 -2.952 -2.020 1.287 H28 YOI 41 YOI H29 H15 H 0 1 N N N N N N -13.679 6.868 43.980 -3.131 -2.409 -0.450 H29 YOI 42 YOI H30 H16 H 0 1 N N N N N N -12.391 5.843 46.549 -1.242 -0.447 0.885 H30 YOI 43 YOI H31 H17 H 0 1 N N N N N N -15.066 6.551 45.714 -1.058 -2.424 -1.287 H31 YOI 44 YOI H32 H18 H 0 1 N N N N N N -16.294 9.725 48.666 3.440 -2.590 -1.868 H32 YOI 45 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YOI C1 CL2 SING N N 1 YOI C1 C3 DOUB Y N 2 YOI C1 C27 SING Y N 3 YOI C3 C4 SING N N 4 YOI C3 C23 SING Y N 5 YOI C4 C5 SING N N 6 YOI C5 N6 SING N N 7 YOI C5 C22 SING N N 8 YOI N6 C7 SING N N 9 YOI C7 N8 DOUB Y N 10 YOI C7 N12 SING Y N 11 YOI N8 C9 SING Y N 12 YOI C9 C10 DOUB Y N 13 YOI C10 C11 SING Y N 14 YOI C10 C13 SING N N 15 YOI C11 N12 DOUB Y N 16 YOI C13 N14 SING N N 17 YOI C13 O21 DOUB N N 18 YOI N14 C15 SING N N 19 YOI N14 C17 SING N N 20 YOI C15 C16 SING N N 21 YOI C16 C17 SING N N 22 YOI C17 C18 SING N N 23 YOI C17 C20 SING N N 24 YOI C18 O19 SING N N 25 YOI O19 C20 SING N N 26 YOI C22 C23 SING N N 27 YOI C23 C24 DOUB Y N 28 YOI C24 C25 SING Y N 29 YOI C25 CL26 SING N N 30 YOI C25 C27 DOUB Y N 31 YOI C11 H33 SING N N 32 YOI C15 H35 SING N N 33 YOI C15 H34 SING N N 34 YOI C16 H37 SING N N 35 YOI C16 H36 SING N N 36 YOI C18 H38 SING N N 37 YOI C18 H39 SING N N 38 YOI C20 H41 SING N N 39 YOI C20 H40 SING N N 40 YOI C22 H42 SING N N 41 YOI C22 H43 SING N N 42 YOI C24 H44 SING N N 43 YOI C27 H45 SING N N 44 YOI C4 H28 SING N N 45 YOI C4 H29 SING N N 46 YOI C5 H30 SING N N 47 YOI N6 H31 SING N N 48 YOI C9 H32 SING N N 49 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YOI SMILES ACDLabs 12.01 "O=C(N1CCC21COC2)c1cnc(NC2Cc3cc(Cl)cc(Cl)c3C2)nc1" YOI InChI InChI 1.06 "InChI=1S/C19H18Cl2N4O2/c20-13-3-11-4-14(6-15(11)16(21)5-13)24-18-22-7-12(8-23-18)17(26)25-2-1-19(25)9-27-10-19/h3,5,7-8,14H,1-2,4,6,9-10H2,(H,22,23,24)/t14-/m1/s1" YOI InChIKey InChI 1.06 MROQDOXKUSMSRW-CQSZACIVSA-N YOI SMILES_CANONICAL CACTVS 3.385 "Clc1cc(Cl)c2C[C@H](Cc2c1)Nc3ncc(cn3)C(=O)N4CCC45COC5" YOI SMILES CACTVS 3.385 "Clc1cc(Cl)c2C[CH](Cc2c1)Nc3ncc(cn3)C(=O)N4CCC45COC5" YOI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1c(cc(c2c1C[C@@H](C2)Nc3ncc(cn3)C(=O)N4CCC45COC5)Cl)Cl" YOI SMILES "OpenEye OEToolkits" 2.0.7 "c1c(cc(c2c1CC(C2)Nc3ncc(cn3)C(=O)N4CCC45COC5)Cl)Cl" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YOI "SYSTEMATIC NAME" ACDLabs 12.01 "(2-{[(2R)-4,6-dichloro-2,3-dihydro-1H-inden-2-yl]amino}pyrimidin-5-yl)(6-oxa-1-azaspiro[3.3]heptan-1-yl)methanone" YOI "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[2-[[(2~{S})-4,6-bis(chloranyl)-2,3-dihydro-1~{H}-inden-2-yl]amino]pyrimidin-5-yl]-(6-oxa-1-azaspiro[3.3]heptan-1-yl)methanone" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YOI "Create component" 2023-06-19 RCSB YOI "Initial release" 2024-12-18 RCSB #