data_YOP # _chem_comp.id YOP _chem_comp.name "3-[(2S)-2-amino-3-hydroxypropyl]pyridin-2(5H)-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C8 H12 N2 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-03-17 _chem_comp.pdbx_modified_date 2024-04-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 168.193 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YOP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7M2P _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YOP CA C9 C 0 1 N N S Y N N 13.086 -2.425 16.452 1.706 -0.054 -0.083 CA YOP 1 YOP CB C11 C 0 1 N N N N N N 13.860 -3.229 15.411 0.697 0.030 1.065 CB YOP 2 YOP C C14 C 0 1 N N N Y N Y 13.009 -0.941 16.064 3.112 0.222 0.453 C YOP 3 YOP CG C15 C 0 1 N N N N N N 14.494 -4.467 16.005 -0.699 -0.120 0.518 CG YOP 4 YOP CD1 C20 C 0 1 N N N N N N 14.476 -4.783 17.345 -1.308 -1.341 0.508 CD1 YOP 5 YOP CE1 C22 C 0 1 N N N N N N 15.106 -5.948 17.785 -2.608 -1.454 -0.005 CE1 YOP 6 YOP CF C23 C 0 1 N N N N N N 15.754 -6.792 16.891 -3.243 -0.359 -0.484 CF YOP 7 YOP CD2 C24 C 0 1 N N N N N N 15.196 -5.405 15.097 -1.390 0.997 0.019 CD2 YOP 8 YOP N N3 N 0 1 N N N Y Y N 11.732 -2.970 16.480 1.663 -1.398 -0.675 N YOP 9 YOP NE2 N4 N 0 1 N N N N N N 15.788 -6.513 15.584 -2.636 0.855 -0.473 NE2 YOP 10 YOP OD2 O4 O 0 1 N N N N N N 15.205 -5.151 13.890 -0.857 2.095 0.022 OD2 YOP 11 YOP O O5 O 0 1 N N N Y N Y 14.268 -0.255 16.052 4.038 0.258 -0.635 O YOP 12 YOP HA H10 H 0 1 N N N Y N N 13.568 -2.527 17.436 1.454 0.686 -0.842 HA YOP 13 YOP HB1 H13 H 0 1 N N N N N N 14.652 -2.593 14.988 0.894 -0.767 1.781 HB1 YOP 14 YOP HB2 H14 H 0 1 N N N N N N 13.168 -3.533 14.612 0.791 0.996 1.561 HB2 YOP 15 YOP HC2 H18 H 0 1 N Y N Y N Y 12.350 -0.433 16.784 3.122 1.181 0.971 HC2 YOP 16 YOP HC1 H19 H 0 1 N N N Y N Y 12.573 -0.873 15.056 3.398 -0.568 1.147 HC1 YOP 17 YOP HD1 H28 H 0 1 N N N N N N 13.978 -4.134 18.050 -0.794 -2.210 0.891 HD1 YOP 18 YOP HE1 H31 H 0 1 N N N N N N 15.090 -6.197 18.836 -3.101 -2.415 -0.020 HE1 YOP 19 YOP HF H33 H 0 1 N N N N N N 16.237 -7.686 17.257 -4.244 -0.452 -0.878 HF YOP 20 YOP H H41 H 0 1 N N N Y Y N 11.185 -2.471 17.152 2.273 -1.460 -1.476 H YOP 21 YOP H42 H42 H 0 1 N N N Y N Y 14.133 0.652 15.803 4.951 0.430 -0.368 H42 YOP 22 YOP H2 H2 H 0 1 N Y N Y Y N 11.316 -2.875 15.576 1.892 -2.102 0.010 H2 YOP 23 YOP HE2 H1 H 0 1 N N N N N N 16.259 -7.135 14.959 -3.107 1.630 -0.816 HE2 YOP 24 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YOP OD2 CD2 DOUB N N 1 YOP CD2 NE2 SING N N 2 YOP CD2 CG SING N N 3 YOP CB CG SING N N 4 YOP CB CA SING N N 5 YOP NE2 CF SING N N 6 YOP CG CD1 DOUB N N 7 YOP O C SING N N 8 YOP C CA SING N N 9 YOP CA N SING N N 10 YOP CF CE1 DOUB N N 11 YOP CD1 CE1 SING N N 12 YOP CA HA SING N N 13 YOP CB HB1 SING N N 14 YOP CB HB2 SING N N 15 YOP C HC2 SING N N 16 YOP C HC1 SING N N 17 YOP CD1 HD1 SING N N 18 YOP CE1 HE1 SING N N 19 YOP CF HF SING N N 20 YOP N H SING N N 21 YOP O H42 SING N N 22 YOP N H2 SING N N 23 YOP NE2 HE2 SING N N 24 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YOP SMILES ACDLabs 12.01 "O=C1NC=CC=C1CC(N)CO" YOP InChI InChI 1.03 "InChI=1S/C8H12N2O2/c9-7(5-11)4-6-2-1-3-10-8(6)12/h1-3,7,11H,4-5,9H2,(H,10,12)/t7-/m0/s1" YOP InChIKey InChI 1.03 QZSOIZRKOUQRHW-ZETCQYMHSA-N YOP SMILES_CANONICAL CACTVS 3.385 "N[C@H](CO)CC1=CC=CNC1=O" YOP SMILES CACTVS 3.385 "N[CH](CO)CC1=CC=CNC1=O" YOP SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1=CNC(=O)C(=C1)C[C@@H](CO)N" YOP SMILES "OpenEye OEToolkits" 2.0.7 "C1=CNC(=O)C(=C1)CC(CO)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YOP "SYSTEMATIC NAME" ACDLabs 12.01 "3-[(2S)-2-amino-3-hydroxypropyl]pyridin-2(1H)-one" YOP "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "3-[(2~{S})-2-azanyl-3-oxidanyl-propyl]-1~{H}-pyridin-2-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YOP "Create component" 2021-03-17 RCSB YOP "Initial release" 2021-08-25 RCSB YOP "Modify backbone" 2023-11-03 PDBE YOP "Other modification" 2024-04-30 PDBE #