data_YOR # _chem_comp.id YOR _chem_comp.name "N-{(3S)-3-(2-methylphenyl)-6-[(oxetan-3-yl)amino]-1-oxo-2,3-dihydro-1H-isoindol-4-yl}-1-benzothiophene-3-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H23 N3 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-12-08 _chem_comp.pdbx_modified_date 2024-03-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 469.555 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YOR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8V8I _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YOR N1 N1 N 0 1 N N N N N N -22.654 -24.766 11.675 3.614 2.629 0.525 N1 YOR 1 YOR N3 N2 N 0 1 N N N N N N -18.924 -22.690 10.400 -0.139 0.184 0.847 N3 YOR 2 YOR C4 C1 C 0 1 Y N N N N N -22.127 -19.778 12.536 -0.298 4.176 -2.124 C4 YOR 3 YOR C5 C2 C 0 1 Y N N N N N -21.208 -20.627 13.128 0.108 2.873 -2.341 C5 YOR 4 YOR C6 C3 C 0 1 Y N N N N N -21.070 -21.927 12.668 0.922 2.239 -1.421 C6 YOR 5 YOR C7 C4 C 0 1 Y N N N N N -21.853 -22.392 11.614 1.331 2.909 -0.283 C7 YOR 6 YOR C8 C5 C 0 1 N N S N N N -21.705 -23.810 11.086 2.218 2.219 0.720 C8 YOR 7 YOR C10 C6 C 0 1 Y N N N N N -20.518 -25.622 11.960 3.492 0.339 0.210 C10 YOR 8 YOR C13 C7 C 0 1 N N N N N N -17.001 -27.819 13.241 1.956 -4.284 -0.187 C13 YOR 9 YOR C15 C8 C 0 1 N N N N N N -17.129 -27.429 14.724 2.039 -5.225 1.029 C15 YOR 10 YOR C17 C9 C 0 1 Y N N N N N -19.066 -23.939 11.019 1.169 -0.212 0.548 C17 YOR 11 YOR C20 C10 C 0 1 Y N N N N N -18.409 -20.132 9.114 -2.823 1.152 1.190 C20 YOR 12 YOR C21 C11 C 0 1 Y N N N N N -19.447 -19.333 6.985 -4.902 0.014 0.366 C21 YOR 13 YOR C22 C12 C 0 1 Y N N N N N -19.943 -18.723 5.826 -6.145 -0.495 -0.020 C22 YOR 14 YOR C24 C13 C 0 1 Y N N N N N -21.086 -20.742 5.242 -5.065 -2.328 -1.120 C24 YOR 15 YOR C26 C14 C 0 1 Y N N N N N -19.773 -20.663 7.278 -3.736 -0.659 0.002 C26 YOR 16 YOR C1 C15 C 0 1 N N N N N N -23.653 -21.955 9.872 1.377 4.946 1.171 C1 YOR 17 YOR C2 C16 C 0 1 Y N N N N N -22.771 -21.525 11.019 0.926 4.213 -0.066 C2 YOR 18 YOR C3 C17 C 0 1 Y N N N N N -22.904 -20.227 11.485 0.116 4.848 -0.989 C3 YOR 19 YOR C9 C18 C 0 1 N N N N N N -21.967 -25.822 12.153 4.346 1.543 0.228 C9 YOR 20 YOR O1 O1 O 0 1 N N N N N N -22.465 -26.785 12.704 5.541 1.550 0.005 O1 YOR 21 YOR C11 C19 C 0 1 Y N N N N N -19.403 -26.392 12.305 3.771 -1.005 -0.041 C11 YOR 22 YOR C12 C20 C 0 1 Y N N N N N -18.119 -25.932 12.008 2.751 -1.944 0.010 C12 YOR 23 YOR N2 N3 N 0 1 N N N N N N -16.970 -26.672 12.325 3.031 -3.290 -0.241 N2 YOR 24 YOR C14 C21 C 0 1 N N N N N N -15.604 -28.347 13.621 2.227 -5.540 -1.036 C14 YOR 25 YOR O2 O2 O 0 1 N N N N N N -16.134 -28.446 14.958 1.720 -6.276 0.095 O2 YOR 26 YOR C16 C22 C 0 1 Y N N N N N -17.958 -24.702 11.370 1.451 -1.550 0.296 C16 YOR 27 YOR C18 C23 C 0 1 N N N N N N -19.302 -22.450 9.122 -1.182 -0.446 0.271 C18 YOR 28 YOR O3 O3 O 0 1 N N N N N N -19.770 -23.359 8.460 -0.990 -1.414 -0.441 O3 YOR 29 YOR C19 C24 C 0 1 Y N N N N N -19.144 -21.099 8.536 -2.549 0.036 0.502 C19 YOR 30 YOR S S1 S 0 1 Y N N N N N -18.407 -18.680 8.237 -4.494 1.449 1.296 S YOR 31 YOR C23 C25 C 0 1 Y N N N N N -20.756 -19.424 4.965 -6.222 -1.655 -0.755 C23 YOR 32 YOR C25 C26 C 0 1 Y N N N N N -20.609 -21.358 6.376 -3.835 -1.843 -0.751 C25 YOR 33 YOR C27 C27 C 0 1 Y N N N N N -20.334 -24.388 11.332 2.183 0.727 0.503 C27 YOR 34 YOR H1 H1 H 0 1 N N N N N N -23.647 -24.651 11.714 3.951 3.536 0.596 H1 YOR 35 YOR H2 H2 H 0 1 N N N N N N -18.524 -21.940 10.927 -0.295 0.912 1.469 H2 YOR 36 YOR H3 H3 H 0 1 N N N N N N -22.237 -18.765 12.895 -0.934 4.671 -2.842 H3 YOR 37 YOR H4 H4 H 0 1 N N N N N N -20.599 -20.277 13.948 -0.213 2.349 -3.230 H4 YOR 38 YOR H5 H5 H 0 1 N N N N N N -20.349 -22.585 13.131 1.238 1.221 -1.591 H5 YOR 39 YOR H6 H6 H 0 1 N N N N N N -21.870 -23.782 9.999 1.896 2.457 1.733 H6 YOR 40 YOR H7 H7 H 0 1 N N N N N N -17.697 -28.617 12.943 0.967 -3.853 -0.343 H7 YOR 41 YOR H8 H8 H 0 1 N N N N N N -16.814 -26.403 14.966 3.039 -5.305 1.457 H8 YOR 42 YOR H9 H9 H 0 1 N N N N N N -18.113 -27.626 15.175 1.266 -5.049 1.777 H9 YOR 43 YOR H10 H10 H 0 1 N N N N N N -17.874 -20.266 10.043 -2.070 1.788 1.631 H10 YOR 44 YOR H11 H11 H 0 1 N N N N N N -19.686 -17.697 5.607 -7.049 0.024 0.262 H11 YOR 45 YOR H12 H12 H 0 1 N N N N N N -21.722 -21.289 4.562 -5.133 -3.238 -1.699 H12 YOR 46 YOR H13 H13 H 0 1 N N N N N N -23.144 -21.748 8.919 0.612 4.861 1.943 H13 YOR 47 YOR H14 H14 H 0 1 N N N N N N -23.858 -23.033 9.951 2.308 4.509 1.533 H14 YOR 48 YOR H15 H15 H 0 1 N N N N N N -24.601 -21.398 9.910 1.537 5.997 0.933 H15 YOR 49 YOR H16 H16 H 0 1 N N N N N N -23.619 -19.562 11.024 -0.193 5.870 -0.823 H16 YOR 50 YOR H17 H17 H 0 1 N N N N N N -19.535 -27.342 12.801 4.779 -1.314 -0.275 H17 YOR 51 YOR H18 H18 H 0 1 N N N N N N -16.614 -27.019 11.457 3.937 -3.566 -0.451 H18 YOR 52 YOR H19 H19 H 0 1 N N N N N N -15.325 -29.305 13.157 1.603 -5.614 -1.927 H19 YOR 53 YOR H20 H20 H 0 1 N N N N N N -14.783 -27.626 13.497 3.284 -5.716 -1.238 H20 YOR 54 YOR H21 H21 H 0 1 N N N N N N -16.965 -24.340 11.147 0.660 -2.284 0.332 H21 YOR 55 YOR H22 H22 H 0 1 N N N N N N -21.137 -18.948 4.074 -7.186 -2.043 -1.049 H22 YOR 56 YOR H23 H23 H 0 1 N N N N N N -20.877 -22.384 6.579 -2.939 -2.374 -1.039 H23 YOR 57 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YOR C23 C24 DOUB Y N 1 YOR C23 C22 SING Y N 2 YOR C24 C25 SING Y N 3 YOR C22 C21 DOUB Y N 4 YOR C25 C26 DOUB Y N 5 YOR C21 C26 SING Y N 6 YOR C21 S SING Y N 7 YOR C26 C19 SING Y N 8 YOR S C20 SING Y N 9 YOR O3 C18 DOUB N N 10 YOR C19 C20 DOUB Y N 11 YOR C19 C18 SING N N 12 YOR C18 N3 SING N N 13 YOR C1 C2 SING N N 14 YOR N3 C17 SING N N 15 YOR C2 C3 DOUB Y N 16 YOR C2 C7 SING Y N 17 YOR C17 C27 DOUB Y N 18 YOR C17 C16 SING Y N 19 YOR C8 C27 SING N N 20 YOR C8 C7 SING N N 21 YOR C8 N1 SING N N 22 YOR C27 C10 SING Y N 23 YOR C16 C12 DOUB Y N 24 YOR C3 C4 SING Y N 25 YOR C7 C6 DOUB Y N 26 YOR N1 C9 SING N N 27 YOR C10 C9 SING N N 28 YOR C10 C11 DOUB Y N 29 YOR C12 C11 SING Y N 30 YOR C12 N2 SING N N 31 YOR C9 O1 DOUB N N 32 YOR N2 C13 SING N N 33 YOR C4 C5 DOUB Y N 34 YOR C6 C5 SING Y N 35 YOR C13 C14 SING N N 36 YOR C13 C15 SING N N 37 YOR C14 O2 SING N N 38 YOR C15 O2 SING N N 39 YOR N1 H1 SING N N 40 YOR N3 H2 SING N N 41 YOR C4 H3 SING N N 42 YOR C5 H4 SING N N 43 YOR C6 H5 SING N N 44 YOR C8 H6 SING N N 45 YOR C13 H7 SING N N 46 YOR C15 H8 SING N N 47 YOR C15 H9 SING N N 48 YOR C20 H10 SING N N 49 YOR C22 H11 SING N N 50 YOR C24 H12 SING N N 51 YOR C1 H13 SING N N 52 YOR C1 H14 SING N N 53 YOR C1 H15 SING N N 54 YOR C3 H16 SING N N 55 YOR C11 H17 SING N N 56 YOR N2 H18 SING N N 57 YOR C14 H19 SING N N 58 YOR C14 H20 SING N N 59 YOR C16 H21 SING N N 60 YOR C23 H22 SING N N 61 YOR C25 H23 SING N N 62 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YOR SMILES ACDLabs 12.01 "Cc1ccccc1C1NC(=O)c2cc(NC3COC3)cc(NC(=O)c3csc4ccccc43)c21" YOR InChI InChI 1.06 "InChI=1S/C27H23N3O3S/c1-15-6-2-3-7-18(15)25-24-20(26(31)30-25)10-16(28-17-12-33-13-17)11-22(24)29-27(32)21-14-34-23-9-5-4-8-19(21)23/h2-11,14,17,25,28H,12-13H2,1H3,(H,29,32)(H,30,31)/t25-/m0/s1" YOR InChIKey InChI 1.06 GQTFJOHRQMWEAZ-VWLOTQADSA-N YOR SMILES_CANONICAL CACTVS 3.385 "Cc1ccccc1[C@@H]2NC(=O)c3cc(NC4COC4)cc(NC(=O)c5csc6ccccc56)c23" YOR SMILES CACTVS 3.385 "Cc1ccccc1[CH]2NC(=O)c3cc(NC4COC4)cc(NC(=O)c5csc6ccccc56)c23" YOR SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1ccccc1[C@H]2c3c(cc(cc3NC(=O)c4csc5c4cccc5)NC6COC6)C(=O)N2" YOR SMILES "OpenEye OEToolkits" 2.0.7 "Cc1ccccc1C2c3c(cc(cc3NC(=O)c4csc5c4cccc5)NC6COC6)C(=O)N2" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YOR "SYSTEMATIC NAME" ACDLabs 12.01 "N-{(3S)-3-(2-methylphenyl)-6-[(oxetan-3-yl)amino]-1-oxo-2,3-dihydro-1H-isoindol-4-yl}-1-benzothiophene-3-carboxamide" YOR "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[(3~{S})-3-(2-methylphenyl)-6-(oxetan-3-ylamino)-1-oxidanylidene-2,3-dihydroisoindol-4-yl]-1-benzothiophene-3-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YOR "Create component" 2023-12-08 RCSB YOR "Initial release" 2024-03-20 RCSB #