data_YOT # _chem_comp.id YOT _chem_comp.name "(3S)-3-{5-[(1,2-benzoxazol-3-yl)amino]-1-oxo-1,3-dihydro-2H-isoindol-2-yl}piperidine-2,6-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H16 N4 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-02-15 _chem_comp.pdbx_modified_date 2023-12-08 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 376.365 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YOT _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8G66 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YOT C10 C1 C 0 1 Y N N N N N 64.228 23.361 23.187 -3.908 -0.182 -0.082 C10 YOT 1 YOT C13 C2 C 0 1 Y N N N N N 63.555 23.763 25.292 -5.622 1.352 -0.175 C13 YOT 2 YOT C15 C3 C 0 1 Y N N N N N 65.679 22.654 25.302 -6.407 -0.867 0.402 C15 YOT 3 YOT C17 C4 C 0 1 Y N N N N N 64.582 23.271 27.360 -7.949 0.952 0.225 C17 YOT 4 YOT C20 C5 C 0 1 Y N N N N N 63.675 23.557 18.735 0.238 -2.499 -0.517 C20 YOT 5 YOT C21 C6 C 0 1 Y N N N N N 64.740 23.048 17.996 0.959 -1.362 -0.139 C21 YOT 6 YOT C22 C7 C 0 1 N N N N N N 64.947 22.926 16.532 2.402 -1.069 -0.106 C22 YOT 7 YOT C24 C8 C 0 1 N N N N N N 68.097 22.768 14.845 4.765 0.008 1.498 C24 YOT 8 YOT C02 C9 C 0 1 N N N N N N 66.853 20.558 14.942 4.636 0.854 -0.826 C02 YOT 9 YOT C03 C10 C 0 1 N N S N N N 66.763 22.062 15.086 3.926 0.816 0.502 C03 YOT 10 YOT C05 C11 C 0 1 N N N N N N 66.839 22.038 17.637 1.321 0.806 0.631 C05 YOT 11 YOT C06 C12 C 0 1 Y N N N N N 65.843 22.523 18.641 0.272 -0.228 0.308 C06 YOT 12 YOT C07 C13 C 0 1 Y N N N N N 65.901 22.497 20.027 -1.099 -0.229 0.379 C07 YOT 13 YOT C08 C14 C 0 1 Y N N N N N 64.844 22.996 20.778 -1.812 -1.365 0.003 C08 YOT 14 YOT C14 C15 C 0 1 Y N N N N N 64.610 23.200 24.596 -5.360 -0.004 0.077 C14 YOT 15 YOT C16 C16 C 0 1 Y N N N N N 65.651 22.700 26.689 -7.685 -0.387 0.473 C16 YOT 16 YOT C18 C17 C 0 1 Y N N N N N 63.513 23.814 26.664 -6.928 1.820 -0.097 C18 YOT 17 YOT C19 C18 C 0 1 Y N N N N N 63.728 23.528 20.124 -1.136 -2.496 -0.446 C19 YOT 18 YOT C25 C19 C 0 1 N N N N N N 68.813 22.224 13.625 6.167 0.624 1.568 C25 YOT 19 YOT C27 C20 C 0 1 N N N N N N 68.986 20.739 13.730 6.755 0.673 0.183 C27 YOT 20 YOT N04 N1 N 0 1 N N N N N N 66.179 22.360 16.374 2.616 0.181 0.338 N04 YOT 21 YOT N09 N2 N 0 1 N N N N N N 65.018 22.911 22.180 -3.203 -1.368 0.073 N09 YOT 22 YOT N11 N3 N 0 1 Y N N N N N 63.074 23.960 23.095 -3.409 0.979 -0.401 N11 YOT 23 YOT N26 N4 N 0 1 N N N N N N 67.947 20.039 14.300 5.974 0.787 -0.902 N26 YOT 24 YOT O01 O1 O 0 1 N N N N N N 65.973 19.835 15.408 3.987 0.946 -1.845 O01 YOT 25 YOT O12 O2 O 0 1 Y N N N N N 62.616 24.230 24.430 -4.444 1.939 -0.468 O12 YOT 26 YOT O23 O3 O 0 1 N N N N N N 64.210 23.275 15.630 3.276 -1.849 -0.435 O23 YOT 27 YOT O28 O4 O 0 1 N N N N N N 70.004 20.150 13.348 7.958 0.608 0.045 O28 YOT 28 YOT H1 H1 H 0 1 N N N N N N 66.512 22.205 24.782 -6.208 -1.910 0.596 H1 YOT 29 YOT H2 H2 H 0 1 N N N N N N 64.581 23.293 28.440 -8.964 1.317 0.284 H2 YOT 30 YOT H3 H3 H 0 1 N N N N N N 62.814 23.972 18.232 0.760 -3.377 -0.868 H3 YOT 31 YOT H4 H4 H 0 1 N N N N N N 68.739 22.626 15.727 4.300 0.045 2.483 H4 YOT 32 YOT H5 H5 H 0 1 N N N N N N 67.909 23.842 14.698 4.834 -1.027 1.164 H5 YOT 33 YOT H6 H6 H 0 1 N N N N N N 66.069 22.419 14.311 3.796 1.832 0.874 H6 YOT 34 YOT H7 H7 H 0 1 N N N N N N 67.010 20.956 17.734 1.181 1.689 0.008 H7 YOT 35 YOT H8 H8 H 0 1 N N N N N N 67.797 22.570 17.735 1.267 1.080 1.685 H8 YOT 36 YOT H9 H9 H 0 1 N N N N N N 66.769 22.088 20.523 -1.623 0.649 0.725 H9 YOT 37 YOT H10 H10 H 0 1 N N N N N N 66.474 22.285 27.253 -8.495 -1.056 0.725 H10 YOT 38 YOT H11 H11 H 0 1 N N N N N N 62.677 24.261 27.182 -7.143 2.861 -0.288 H11 YOT 39 YOT H12 H12 H 0 1 N N N N N N 62.903 23.918 20.701 -1.692 -3.374 -0.742 H12 YOT 40 YOT H13 H13 H 0 1 N N N N N N 69.802 22.698 13.546 6.100 1.635 1.971 H13 YOT 41 YOT H14 H14 H 0 1 N N N N N N 68.222 22.456 12.726 6.801 0.015 2.212 H14 YOT 42 YOT H15 H15 H 0 1 N N N N N N 65.853 22.447 22.474 -3.678 -2.199 0.231 H15 YOT 43 YOT H16 H16 H 0 1 N N N N N N 67.996 19.042 14.239 6.393 0.823 -1.776 H16 YOT 44 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YOT O28 C27 DOUB N N 1 YOT C25 C27 SING N N 2 YOT C25 C24 SING N N 3 YOT C27 N26 SING N N 4 YOT N26 C02 SING N N 5 YOT C24 C03 SING N N 6 YOT C02 C03 SING N N 7 YOT C02 O01 DOUB N N 8 YOT C03 N04 SING N N 9 YOT O23 C22 DOUB N N 10 YOT N04 C22 SING N N 11 YOT N04 C05 SING N N 12 YOT C22 C21 SING N N 13 YOT C05 C06 SING N N 14 YOT C21 C06 DOUB Y N 15 YOT C21 C20 SING Y N 16 YOT C06 C07 SING Y N 17 YOT C20 C19 DOUB Y N 18 YOT C07 C08 DOUB Y N 19 YOT C19 C08 SING Y N 20 YOT C08 N09 SING N N 21 YOT N09 C10 SING N N 22 YOT N11 C10 DOUB Y N 23 YOT N11 O12 SING Y N 24 YOT C10 C14 SING Y N 25 YOT O12 C13 SING Y N 26 YOT C14 C13 DOUB Y N 27 YOT C14 C15 SING Y N 28 YOT C13 C18 SING Y N 29 YOT C15 C16 DOUB Y N 30 YOT C18 C17 DOUB Y N 31 YOT C16 C17 SING Y N 32 YOT C15 H1 SING N N 33 YOT C17 H2 SING N N 34 YOT C20 H3 SING N N 35 YOT C24 H4 SING N N 36 YOT C24 H5 SING N N 37 YOT C03 H6 SING N N 38 YOT C05 H7 SING N N 39 YOT C05 H8 SING N N 40 YOT C07 H9 SING N N 41 YOT C16 H10 SING N N 42 YOT C18 H11 SING N N 43 YOT C19 H12 SING N N 44 YOT C25 H13 SING N N 45 YOT C25 H14 SING N N 46 YOT N09 H15 SING N N 47 YOT N26 H16 SING N N 48 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YOT SMILES ACDLabs 12.01 "O=C1NC(=O)CCC1N1Cc2cc(ccc2C1=O)Nc1noc2ccccc21" YOT InChI InChI 1.06 "InChI=1S/C20H16N4O4/c25-17-8-7-15(19(26)22-17)24-10-11-9-12(5-6-13(11)20(24)27)21-18-14-3-1-2-4-16(14)28-23-18/h1-6,9,15H,7-8,10H2,(H,21,23)(H,22,25,26)/t15-/m0/s1" YOT InChIKey InChI 1.06 AJUZTJBGJWQZFW-HNNXBMFYSA-N YOT SMILES_CANONICAL CACTVS 3.385 "O=C1CC[C@H](N2Cc3cc(Nc4noc5ccccc45)ccc3C2=O)C(=O)N1" YOT SMILES CACTVS 3.385 "O=C1CC[CH](N2Cc3cc(Nc4noc5ccccc45)ccc3C2=O)C(=O)N1" YOT SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)c(no2)Nc3ccc4c(c3)CN(C4=O)[C@H]5CCC(=O)NC5=O" YOT SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)c(no2)Nc3ccc4c(c3)CN(C4=O)C5CCC(=O)NC5=O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YOT "SYSTEMATIC NAME" ACDLabs 12.01 "(3S)-3-{5-[(1,2-benzoxazol-3-yl)amino]-1-oxo-1,3-dihydro-2H-isoindol-2-yl}piperidine-2,6-dione" YOT "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(3~{S})-3-[6-(1,2-benzoxazol-3-ylamino)-3-oxidanylidene-1~{H}-isoindol-2-yl]piperidine-2,6-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YOT "Create component" 2023-02-15 RCSB YOT "Initial release" 2023-12-13 RCSB #