data_YOX # _chem_comp.id YOX _chem_comp.name "2-cyclopentyl-7-iodanyl-1~{H}-indole-3-carbonitrile" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H13 I N2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-12-08 _chem_comp.pdbx_modified_date 2024-09-20 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 336.171 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YOX _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8R8E _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YOX C1 C1 C 0 1 Y N N N N N 4.684 22.741 29.643 -0.078 -3.219 0.010 C1 YOX 1 YOX C10 C2 C 0 1 N N N N N N 4.010 24.708 27.170 3.136 -2.463 -0.004 C10 YOX 2 YOX C11 C3 C 0 1 N N N N N N 5.215 23.559 23.821 3.303 1.530 1.227 C11 YOX 3 YOX C12 C4 C 0 1 N N N N N N 5.751 24.316 22.598 3.887 2.878 0.770 C12 YOX 4 YOX C13 C5 C 0 1 N N N N N N 7.138 24.746 22.933 4.181 2.743 -0.739 C13 YOX 5 YOX C14 C6 C 0 1 N N N N N N 7.429 24.179 24.326 3.231 1.614 -1.210 C14 YOX 6 YOX C2 C7 C 0 1 Y N N N N N 5.188 21.823 30.535 -1.455 -3.254 0.014 C2 YOX 7 YOX C3 C8 C 0 1 Y N N N N N 6.312 21.041 30.199 -2.186 -2.075 0.010 C3 YOX 8 YOX C4 C9 C 0 1 Y N N N N N 6.931 21.165 28.979 -1.547 -0.854 0.002 C4 YOX 9 YOX C5 C10 C 0 1 Y N N N N N 6.418 22.099 28.068 -0.157 -0.797 -0.002 C5 YOX 10 YOX C6 C11 C 0 1 Y N N N N N 5.294 22.878 28.401 0.581 -1.992 0.002 C6 YOX 11 YOX C7 C12 C 0 1 Y N N N N N 5.952 23.443 26.311 2.017 -0.228 -0.012 C7 YOX 12 YOX C8 C13 C 0 1 Y N N N N N 5.018 23.716 27.267 2.000 -1.591 -0.005 C8 YOX 13 YOX C9 C14 C 0 1 N N N N N N 6.046 24.120 24.974 3.261 0.623 -0.020 C9 YOX 14 YOX I1 I1 I 0 1 N N N N N N 8.611 19.953 28.555 -2.669 0.916 -0.004 I1 YOX 15 YOX N1 N1 N 0 1 Y N N N N N 6.793 22.462 26.789 0.746 0.246 -0.009 N1 YOX 16 YOX N2 N2 N 0 1 N N N N N N 3.250 25.568 27.100 4.037 -3.154 -0.002 N2 YOX 17 YOX H1 H1 H 0 1 N N N N N N 3.828 23.346 29.903 0.488 -4.139 0.017 H1 YOX 18 YOX H7 H2 H 0 1 N N N N N N 5.371 22.476 23.713 3.941 1.086 1.990 H7 YOX 19 YOX H6 H3 H 0 1 N N N N N N 4.144 23.762 23.972 2.296 1.674 1.619 H6 YOX 20 YOX H9 H4 H 0 1 N N N N N N 5.761 23.656 21.718 3.164 3.676 0.940 H9 YOX 21 YOX H8 H5 H 0 1 N N N N N N 5.122 25.194 22.390 4.809 3.088 1.312 H8 YOX 22 YOX H11 H6 H 0 1 N N N N N N 7.851 24.343 22.199 3.952 3.674 -1.257 H11 YOX 23 YOX H10 H7 H 0 1 N N N N N N 7.206 25.844 22.945 5.220 2.460 -0.901 H10 YOX 24 YOX H12 H8 H 0 1 N N N N N N 8.101 24.843 24.890 2.223 1.997 -1.368 H12 YOX 25 YOX H13 H9 H 0 1 N N N N N N 7.876 23.176 24.258 3.611 1.144 -2.118 H13 YOX 26 YOX H2 H10 H 0 1 N N N N N N 4.719 21.700 31.500 -1.968 -4.205 0.020 H2 YOX 27 YOX H3 H11 H 0 1 N N N N N N 6.694 20.330 30.916 -3.265 -2.114 0.013 H3 YOX 28 YOX H5 H12 H 0 1 N N N N N N 5.721 25.161 25.119 4.151 -0.004 -0.066 H5 YOX 29 YOX H4 H13 H 0 1 N N N N N N 7.562 22.070 26.284 0.506 1.186 -0.013 H4 YOX 30 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YOX C1 C2 DOUB Y N 1 YOX C1 C6 SING Y N 2 YOX C2 C3 SING Y N 3 YOX C3 C4 DOUB Y N 4 YOX C4 C5 SING Y N 5 YOX C4 I1 SING N N 6 YOX C5 C6 DOUB Y N 7 YOX C5 N1 SING Y N 8 YOX C6 C8 SING Y N 9 YOX N1 C7 SING Y N 10 YOX C7 C8 DOUB Y N 11 YOX C7 C9 SING N N 12 YOX C8 C10 SING N N 13 YOX C9 C11 SING N N 14 YOX C9 C14 SING N N 15 YOX C10 N2 TRIP N N 16 YOX C11 C12 SING N N 17 YOX C12 C13 SING N N 18 YOX C13 C14 SING N N 19 YOX C1 H1 SING N N 20 YOX C11 H7 SING N N 21 YOX C11 H6 SING N N 22 YOX C12 H9 SING N N 23 YOX C12 H8 SING N N 24 YOX C13 H11 SING N N 25 YOX C13 H10 SING N N 26 YOX C14 H12 SING N N 27 YOX C14 H13 SING N N 28 YOX C2 H2 SING N N 29 YOX C3 H3 SING N N 30 YOX C9 H5 SING N N 31 YOX N1 H4 SING N N 32 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YOX InChI InChI 1.06 "InChI=1S/C14H13IN2/c15-12-7-3-6-10-11(8-16)13(17-14(10)12)9-4-1-2-5-9/h3,6-7,9,17H,1-2,4-5H2" YOX InChIKey InChI 1.06 BBYDGWHLEKHRAJ-UHFFFAOYSA-N YOX SMILES_CANONICAL CACTVS 3.385 "Ic1cccc2c1[nH]c(C3CCCC3)c2C#N" YOX SMILES CACTVS 3.385 "Ic1cccc2c1[nH]c(C3CCCC3)c2C#N" YOX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc2c(c([nH]c2c(c1)I)C3CCCC3)C#N" YOX SMILES "OpenEye OEToolkits" 2.0.7 "c1cc2c(c([nH]c2c(c1)I)C3CCCC3)C#N" # _pdbx_chem_comp_identifier.comp_id YOX _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-cyclopentyl-7-iodanyl-1~{H}-indole-3-carbonitrile" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YOX "Create component" 2023-12-08 PDBE YOX "Initial release" 2024-09-25 RCSB #