data_YOZ # _chem_comp.id YOZ _chem_comp.name "(2S,5R)-5-amino-1-formyl-5-hydroxy-N-(piperidin-4-yl)piperidine-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H22 N4 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "Relebactam, the acylated, desulfated, imine-hydrolysis intermediate" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-02-15 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 270.328 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YOZ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8G2T _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YOZ N1 N1 N 0 1 N N N N N N -10.602 4.469 -1.473 -3.820 0.534 1.394 N1 YOZ 1 YOZ C1 C1 C 0 1 N N R N N N -9.340 3.979 -1.986 -3.827 0.644 -0.071 C1 YOZ 2 YOZ O1 O1 O 0 1 N N N N N N -8.596 5.078 -2.520 -5.162 0.873 -0.525 O1 YOZ 3 YOZ C2 C2 C 0 1 N N N N N N -8.509 3.290 -0.896 -2.934 1.810 -0.500 C2 YOZ 4 YOZ C3 C3 C 0 1 N N N N N N -7.255 2.634 -1.477 -1.511 1.582 0.015 C3 YOZ 5 YOZ C4 C4 C 0 1 N N S N N N -7.579 1.724 -2.664 -0.951 0.294 -0.597 C4 YOZ 6 YOZ C5 C5 C 0 1 N N N N N N -8.229 0.417 -2.212 0.394 -0.010 0.010 C5 YOZ 7 YOZ O2 O2 O 0 1 N N N N N N -7.937 -0.075 -1.119 0.469 -0.398 1.156 O2 YOZ 8 YOZ N2 N2 N 0 1 N N N N N N -9.128 -0.171 -2.998 1.515 0.149 -0.722 N2 YOZ 9 YOZ C6 C6 C 0 1 N N N N N N -9.745 -1.454 -2.669 2.823 -0.147 -0.133 C6 YOZ 10 YOZ C7 C7 C 0 1 N N N N N N -10.397 -2.104 -3.877 3.331 1.081 0.628 C7 YOZ 11 YOZ C8 C8 C 0 1 N N N N N N -11.036 -3.432 -3.522 4.724 0.787 1.190 C8 YOZ 12 YOZ N3 N3 N 0 1 N N N N N N -12.004 -3.264 -2.427 5.638 0.459 0.089 N3 YOZ 13 YOZ C9 C9 C 0 1 N N N N N N -11.420 -2.611 -1.248 5.196 -0.744 -0.627 C9 YOZ 14 YOZ C10 C10 C 0 1 N N N N N N -10.785 -1.275 -1.579 3.818 -0.496 -1.243 C10 YOZ 15 YOZ N4 N4 N 0 1 N N N N N N -8.388 2.468 -3.645 -1.880 -0.808 -0.311 N4 YOZ 16 YOZ C11 C11 C 0 1 N N N N N N -8.038 2.741 -4.913 -1.445 -1.938 0.280 C11 YOZ 17 YOZ O3 O3 O 0 1 N N N N N N -8.565 3.573 -5.639 -2.202 -2.873 0.435 O3 YOZ 18 YOZ C12 C12 C 0 1 N N N N N N -9.642 2.978 -3.107 -3.293 -0.655 -0.684 C12 YOZ 19 YOZ H1 H1 H 0 1 N N N N N N -10.431 5.126 -0.738 -4.403 -0.230 1.702 H1 YOZ 20 YOZ H2 H2 H 0 1 N N N N N N -11.110 4.917 -2.209 -2.879 0.435 1.745 H2 YOZ 21 YOZ H4 H4 H 0 1 N N N N N N -8.408 5.700 -1.827 -5.784 0.171 -0.289 H4 YOZ 22 YOZ H5 H5 H 0 1 N N N N N N -8.207 4.039 -0.150 -2.920 1.876 -1.588 H5 YOZ 23 YOZ H6 H6 H 0 1 N N N N N N -9.125 2.518 -0.412 -3.325 2.739 -0.085 H6 YOZ 24 YOZ H7 H7 H 0 1 N N N N N N -6.772 2.034 -0.692 -0.881 2.424 -0.271 H7 YOZ 25 YOZ H8 H8 H 0 1 N N N N N N -6.565 3.422 -1.812 -1.527 1.492 1.101 H8 YOZ 26 YOZ H9 H9 H 0 1 N N N N N N -6.624 1.463 -3.143 -0.847 0.417 -1.675 H9 YOZ 27 YOZ H10 H10 H 0 1 N N N N N N -9.392 0.284 -3.849 1.455 0.459 -1.639 H10 YOZ 28 YOZ H11 H11 H 0 1 N N N N N N -8.968 -2.135 -2.292 2.732 -0.989 0.553 H11 YOZ 29 YOZ H12 H12 H 0 1 N N N N N N -9.631 -2.272 -4.648 3.384 1.933 -0.050 H12 YOZ 30 YOZ H13 H13 H 0 1 N N N N N N -11.172 -1.429 -4.270 2.649 1.309 1.447 H13 YOZ 31 YOZ H14 H14 H 0 1 N N N N N N -11.555 -3.831 -4.406 5.094 1.665 1.720 H14 YOZ 32 YOZ H15 H15 H 0 1 N N N N N N -10.253 -4.137 -3.207 4.667 -0.056 1.878 H15 YOZ 33 YOZ H16 H16 H 0 1 N N N N N N -12.766 -2.707 -2.757 5.738 1.240 -0.543 H16 YOZ 34 YOZ H18 H18 H 0 1 N N N N N N -12.214 -2.449 -0.505 5.910 -0.979 -1.417 H18 YOZ 35 YOZ H19 H19 H 0 1 N N N N N N -10.650 -3.272 -0.824 5.137 -1.580 0.069 H19 YOZ 36 YOZ H20 H20 H 0 1 N N N N N N -10.303 -0.867 -0.678 3.483 -1.395 -1.762 H20 YOZ 37 YOZ H21 H21 H 0 1 N N N N N N -11.562 -0.578 -1.927 3.879 0.331 -1.951 H21 YOZ 38 YOZ H22 H22 H 0 1 N Y N N N N -7.218 2.175 -5.329 -0.421 -2.011 0.617 H22 YOZ 39 YOZ H23 H23 H 0 1 N N N N N N -10.208 3.480 -3.906 -3.865 -1.501 -0.303 H23 YOZ 40 YOZ H24 H24 H 0 1 N N N N N N -10.236 2.144 -2.705 -3.382 -0.610 -1.769 H24 YOZ 41 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YOZ O3 C11 DOUB N N 1 YOZ C11 N4 SING N N 2 YOZ C7 C8 SING N N 3 YOZ C7 C6 SING N N 4 YOZ N4 C12 SING N N 5 YOZ N4 C4 SING N N 6 YOZ C8 N3 SING N N 7 YOZ C12 C1 SING N N 8 YOZ N2 C6 SING N N 9 YOZ N2 C5 SING N N 10 YOZ C6 C10 SING N N 11 YOZ C4 C5 SING N N 12 YOZ C4 C3 SING N N 13 YOZ O1 C1 SING N N 14 YOZ N3 C9 SING N N 15 YOZ C5 O2 DOUB N N 16 YOZ C1 N1 SING N N 17 YOZ C1 C2 SING N N 18 YOZ C10 C9 SING N N 19 YOZ C3 C2 SING N N 20 YOZ N1 H1 SING N N 21 YOZ N1 H2 SING N N 22 YOZ O1 H4 SING N N 23 YOZ C2 H5 SING N N 24 YOZ C2 H6 SING N N 25 YOZ C3 H7 SING N N 26 YOZ C3 H8 SING N N 27 YOZ C4 H9 SING N N 28 YOZ N2 H10 SING N N 29 YOZ C6 H11 SING N N 30 YOZ C7 H12 SING N N 31 YOZ C7 H13 SING N N 32 YOZ C8 H14 SING N N 33 YOZ C8 H15 SING N N 34 YOZ N3 H16 SING N N 35 YOZ C9 H18 SING N N 36 YOZ C9 H19 SING N N 37 YOZ C10 H20 SING N N 38 YOZ C10 H21 SING N N 39 YOZ C11 H22 SING N N 40 YOZ C12 H23 SING N N 41 YOZ C12 H24 SING N N 42 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YOZ SMILES ACDLabs 12.01 "OC1(N)CCC(C(=O)NC2CCNCC2)N(C=O)C1" YOZ InChI InChI 1.06 "InChI=1S/C12H22N4O3/c13-12(19)4-1-10(16(7-12)8-17)11(18)15-9-2-5-14-6-3-9/h8-10,14,19H,1-7,13H2,(H,15,18)/t10-,12+/m0/s1" YOZ InChIKey InChI 1.06 SWVCDWJYHKCKJJ-CMPLNLGQSA-N YOZ SMILES_CANONICAL CACTVS 3.385 "N[C@@]1(O)CC[C@H](N(C1)C=O)C(=O)NC2CCNCC2" YOZ SMILES CACTVS 3.385 "N[C]1(O)CC[CH](N(C1)C=O)C(=O)NC2CCNCC2" YOZ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1C[C@@](CN([C@@H]1C(=O)NC2CCNCC2)C=O)(N)O" YOZ SMILES "OpenEye OEToolkits" 2.0.7 "C1CC(CN(C1C(=O)NC2CCNCC2)C=O)(N)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YOZ "SYSTEMATIC NAME" ACDLabs 12.01 "(2S,5R)-5-amino-1-formyl-5-hydroxy-N-(piperidin-4-yl)piperidine-2-carboxamide" YOZ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S},5~{R})-5-azanyl-1-methanoyl-5-oxidanyl-~{N}-piperidin-4-yl-piperidine-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YOZ "Create component" 2023-02-15 RCSB YOZ "Initial release" 2023-08-09 RCSB YOZ "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id YOZ _pdbx_chem_comp_synonyms.name "Relebactam, the acylated, desulfated, imine-hydrolysis intermediate" _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id YOZ _pdbx_chem_comp_pcm.modified_residue_id SER _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C11 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #