data_YP0 # _chem_comp.id YP0 _chem_comp.name "(4M,8P)-8-(2-fluorophenyl)-4-[(3P)-3-(5-methyl-1,3,4-oxadiazol-2-yl)phenyl]-1,3-dihydro-2H-1,5-benzodiazepin-2-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H17 F N4 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-19 _chem_comp.pdbx_modified_date 2024-12-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 412.416 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YP0 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7G49 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YP0 C01 C1 C 0 1 Y N N N N N -11.882 7.635 43.384 -2.409 -1.622 0.525 C01 YP0 1 YP0 C02 C2 C 0 1 Y N N N N N -12.891 5.252 44.509 -3.320 0.822 -0.409 C02 YP0 2 YP0 C04 C3 C 0 1 Y N N N N N -11.872 5.153 43.549 -4.208 -0.082 0.161 C04 YP0 3 YP0 C05 C4 C 0 1 Y N N N N N -13.435 6.534 44.896 -1.966 0.516 -0.517 C05 YP0 4 YP0 C06 C5 C 0 1 Y N N N N N -12.908 7.735 44.331 -1.502 -0.716 -0.052 C06 YP0 5 YP0 C10 C6 C 0 1 N N N N N N -14.843 7.578 46.966 0.074 1.801 -0.665 C10 YP0 6 YP0 C15 C7 C 0 1 Y N N N N N -16.086 13.294 46.109 4.685 -2.150 -0.153 C15 YP0 7 YP0 C16 C8 C 0 1 Y N N N N N -15.409 12.813 44.965 4.565 -0.772 0.047 C16 YP0 8 YP0 C17 C9 C 0 1 Y N N N N N -16.081 12.530 47.266 3.555 -2.936 -0.263 C17 YP0 9 YP0 C18 C10 C 0 1 Y N N N N N -14.742 11.577 45.012 3.303 -0.191 0.136 C18 YP0 10 YP0 C19 C11 C 0 1 Y N N N N N -15.326 13.515 43.626 5.778 0.067 0.165 C19 YP0 11 YP0 C21 C12 C 0 1 Y N N N N N -15.452 13.814 41.415 7.826 0.730 0.253 C21 YP0 12 YP0 C24 C13 C 0 1 N N N N N N -15.732 13.557 39.934 9.333 0.761 0.256 C24 YP0 13 YP0 C25 C14 C 0 1 Y N N N N N -11.302 3.878 43.206 -5.648 0.257 0.269 C25 YP0 14 YP0 C26 C15 C 0 1 Y N N N N N -11.060 3.493 41.886 -6.616 -0.645 -0.177 C26 YP0 15 YP0 C27 C16 C 0 1 Y N N N N N -10.090 1.410 42.617 -8.337 0.891 0.471 C27 YP0 16 YP0 C28 C17 C 0 1 Y N N N N N -10.299 1.796 43.931 -7.381 1.786 0.919 C28 YP0 17 YP0 C03 C18 C 0 1 Y N N N N N -11.342 6.337 43.014 -3.742 -1.311 0.630 C03 YP0 18 YP0 N07 N1 N 0 1 N N N N N N -13.545 8.988 44.765 -0.206 -1.110 -0.125 N07 YP0 19 YP0 C08 C19 C 0 1 N N N N N N -13.991 9.469 46.078 0.825 -0.386 0.117 C08 YP0 20 YP0 C09 C20 C 0 1 N N N N N N -13.819 8.607 47.231 0.702 1.068 0.493 C09 YP0 21 YP0 N11 N2 N 0 1 N N N N N N -14.572 6.646 45.864 -1.147 1.480 -1.092 N11 YP0 22 YP0 C12 C21 C 0 1 Y N N N N N -14.710 10.816 46.167 2.165 -0.991 0.025 C12 YP0 23 YP0 O13 O1 O 0 1 N N N N N N -15.879 7.504 47.625 0.686 2.693 -1.213 O13 YP0 24 YP0 C14 C22 C 0 1 Y N N N N N -15.405 11.277 47.309 2.300 -2.368 -0.176 C14 YP0 25 YP0 O20 O2 O 0 1 Y N N N N N -15.682 12.932 42.444 7.055 -0.360 0.098 O20 YP0 26 YP0 N22 N3 N 0 1 Y N N N N N -14.945 14.932 41.976 7.035 1.756 0.401 N22 YP0 27 YP0 N23 N4 N 0 1 Y N N N N N -14.860 14.754 43.348 5.810 1.366 0.347 N23 YP0 28 YP0 C29 C23 C 0 1 Y N N N N N -10.475 2.265 41.585 -7.956 -0.322 -0.073 C29 YP0 29 YP0 C30 C24 C 0 1 Y N N N N N -10.914 3.022 44.227 -6.040 1.475 0.821 C30 YP0 30 YP0 F31 F1 F 0 1 N N N N N N -11.429 4.280 40.881 -6.244 -1.830 -0.709 F31 YP0 31 YP0 H32 H1 H 0 1 N N N N N N -11.488 8.530 42.924 -2.054 -2.576 0.886 H32 YP0 32 YP0 H33 H2 H 0 1 N N N N N N -13.276 4.353 44.967 -3.684 1.772 -0.771 H33 YP0 33 YP0 H39 H3 H 0 1 N N N N N N -16.600 14.243 46.082 5.663 -2.600 -0.227 H39 YP0 34 YP0 H40 H4 H 0 1 N N N N N N -16.596 12.889 48.145 3.654 -4.000 -0.418 H40 YP0 35 YP0 H41 H5 H 0 1 N N N N N N -14.243 11.213 44.126 3.206 0.873 0.292 H41 YP0 36 YP0 H42 H6 H 0 1 N N N N N N -16.151 12.548 39.809 9.697 0.623 1.273 H42 YP0 37 YP0 H43 H7 H 0 1 N N N N N N -16.452 14.301 39.563 9.713 -0.040 -0.378 H43 YP0 38 YP0 H44 H8 H 0 1 N N N N N N -14.794 13.638 39.364 9.677 1.722 -0.127 H44 YP0 39 YP0 H45 H9 H 0 1 N N N N N N -9.634 0.457 42.394 -9.385 1.139 0.550 H45 YP0 40 YP0 H46 H10 H 0 1 N N N N N N -9.986 1.147 44.735 -7.685 2.731 1.343 H46 YP0 41 YP0 H34 H11 H 0 1 N N N N N N -10.520 6.283 42.316 -4.428 -2.016 1.075 H34 YP0 42 YP0 H35 H12 H 0 1 N N N N N N -12.809 8.173 47.264 1.690 1.480 0.698 H35 YP0 43 YP0 H36 H13 H 0 1 N N N N N N -14.019 9.144 48.170 0.071 1.167 1.377 H36 YP0 44 YP0 H37 H14 H 0 1 N N N N N N -15.282 5.954 45.735 -1.490 1.956 -1.865 H37 YP0 45 YP0 H38 H15 H 0 1 N N N N N N -15.423 10.682 48.210 1.420 -2.989 -0.263 H38 YP0 46 YP0 H47 H16 H 0 1 N N N N N N -10.320 1.976 40.556 -8.707 -1.018 -0.418 H47 YP0 47 YP0 H48 H17 H 0 1 N N N N N N -11.086 3.301 45.256 -5.296 2.174 1.172 H48 YP0 48 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YP0 C01 C03 DOUB Y N 1 YP0 C02 C04 DOUB Y N 2 YP0 C03 C04 SING Y N 3 YP0 C02 C05 SING Y N 4 YP0 C01 C06 SING Y N 5 YP0 C05 C06 DOUB Y N 6 YP0 C06 N07 SING N N 7 YP0 N07 C08 DOUB N N 8 YP0 C08 C09 SING N N 9 YP0 C09 C10 SING N N 10 YP0 C05 N11 SING N N 11 YP0 C10 N11 SING N N 12 YP0 C08 C12 SING N N 13 YP0 C10 O13 DOUB N N 14 YP0 C12 C14 DOUB Y N 15 YP0 C15 C16 SING Y N 16 YP0 C14 C17 SING Y N 17 YP0 C15 C17 DOUB Y N 18 YP0 C12 C18 SING Y N 19 YP0 C16 C18 DOUB Y N 20 YP0 C16 C19 SING N N 21 YP0 C19 O20 SING Y N 22 YP0 O20 C21 SING Y N 23 YP0 C21 N22 DOUB Y N 24 YP0 C19 N23 DOUB Y N 25 YP0 N22 N23 SING Y N 26 YP0 C21 C24 SING N N 27 YP0 C04 C25 SING N N 28 YP0 C25 C26 DOUB Y N 29 YP0 C27 C28 SING Y N 30 YP0 C26 C29 SING Y N 31 YP0 C27 C29 DOUB Y N 32 YP0 C25 C30 SING Y N 33 YP0 C28 C30 DOUB Y N 34 YP0 C26 F31 SING N N 35 YP0 C01 H32 SING N N 36 YP0 C02 H33 SING N N 37 YP0 C15 H39 SING N N 38 YP0 C17 H40 SING N N 39 YP0 C18 H41 SING N N 40 YP0 C24 H42 SING N N 41 YP0 C24 H43 SING N N 42 YP0 C24 H44 SING N N 43 YP0 C27 H45 SING N N 44 YP0 C28 H46 SING N N 45 YP0 C03 H34 SING N N 46 YP0 C09 H35 SING N N 47 YP0 C09 H36 SING N N 48 YP0 N11 H37 SING N N 49 YP0 C14 H38 SING N N 50 YP0 C29 H47 SING N N 51 YP0 C30 H48 SING N N 52 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YP0 SMILES ACDLabs 12.01 "Cc1nnc(o1)c1cc(ccc1)C=1CC(=O)Nc2cc(ccc2N=1)c1ccccc1F" YP0 InChI InChI 1.06 "InChI=1S/C24H17FN4O2/c1-14-28-29-24(31-14)17-6-4-5-16(11-17)21-13-23(30)27-22-12-15(9-10-20(22)26-21)18-7-2-3-8-19(18)25/h2-12H,13H2,1H3,(H,27,30)" YP0 InChIKey InChI 1.06 VWBYRYSGMIRSNX-UHFFFAOYSA-N YP0 SMILES_CANONICAL CACTVS 3.385 "Cc1oc(nn1)c2cccc(c2)C3=Nc4ccc(cc4NC(=O)C3)c5ccccc5F" YP0 SMILES CACTVS 3.385 "Cc1oc(nn1)c2cccc(c2)C3=Nc4ccc(cc4NC(=O)C3)c5ccccc5F" YP0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1nnc(o1)c2cccc(c2)C3=Nc4ccc(cc4NC(=O)C3)c5ccccc5F" YP0 SMILES "OpenEye OEToolkits" 2.0.7 "Cc1nnc(o1)c2cccc(c2)C3=Nc4ccc(cc4NC(=O)C3)c5ccccc5F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YP0 "SYSTEMATIC NAME" ACDLabs 12.01 "(4M,8P)-8-(2-fluorophenyl)-4-[(3P)-3-(5-methyl-1,3,4-oxadiazol-2-yl)phenyl]-1,3-dihydro-2H-1,5-benzodiazepin-2-one" YP0 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "8-(2-fluorophenyl)-4-[3-(5-methyl-1,3,4-oxadiazol-2-yl)phenyl]-1,3-dihydro-1,5-benzodiazepin-2-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YP0 "Create component" 2023-06-19 RCSB YP0 "Initial release" 2024-12-18 RCSB #