data_YP1
#
_chem_comp.id YP1
_chem_comp.name "2-chloro-6-[(2R)-2-hydroxy-3-{[2-methyl-1-(naphthalen-2-yl)propan-2-yl]amino}propoxy]benzonitrile"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C24 H25 Cl N2 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2021-03-18
_chem_comp.pdbx_modified_date 2021-06-11
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 408.921
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code YP1
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag Y
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code ?
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
YP1 C1 C1 C 0 1 N N N ? ? ? 2.523 0.311 -1.615 C1 YP1 1
YP1 O2 O1 O 0 1 N N N ? ? ? -1.555 1.993 -0.745 O2 YP1 2
YP1 C2 C2 C 0 1 N N N ? ? ? 2.376 0.550 -0.111 C2 YP1 3
YP1 C14 C3 C 0 1 Y N N ? ? ? 5.430 1.222 -1.153 C14 YP1 4
YP1 C3 C4 C 0 1 N N N ? ? ? 2.537 -0.776 0.635 C3 YP1 5
YP1 C4 C5 C 0 1 N N N ? ? ? 3.453 1.532 0.357 C4 YP1 6
YP1 C5 C6 C 0 1 Y N N ? ? ? 4.816 0.956 0.070 C5 YP1 7
YP1 C6 C7 C 0 1 Y N N ? ? ? 5.429 0.184 1.009 C6 YP1 8
YP1 C7 C8 C 0 1 Y N N ? ? ? 6.700 -0.354 0.745 C7 YP1 9
YP1 C8 C9 C 0 1 Y N N ? ? ? 7.364 -1.155 1.689 C8 YP1 10
YP1 C10 C10 C 0 1 Y N N ? ? ? 9.208 -1.392 0.176 C10 YP1 11
YP1 C13 C11 C 0 1 Y N N ? ? ? 6.660 0.717 -1.443 C13 YP1 12
YP1 C11 C12 C 0 1 Y N N ? ? ? 8.596 -0.621 -0.762 C11 YP1 13
YP1 C12 C13 C 0 1 Y N N ? ? ? 7.324 -0.083 -0.499 C12 YP1 14
YP1 C15 C14 C 0 1 N N N ? ? ? -0.013 0.194 -0.268 C15 YP1 15
YP1 CL1 CL1 CL 0 0 N N N ? ? ? -8.816 -0.235 0.420 CL1 YP1 16
YP1 N1 N1 N 0 1 N N N ? ? ? -6.399 2.319 1.327 N1 YP1 17
YP1 O1 O2 O 0 1 N N N ? ? ? -3.748 0.336 0.094 O1 YP1 18
YP1 N2 N2 N 0 1 N N N ? ? ? 1.048 1.111 0.169 N2 YP1 19
YP1 C9 C15 C 0 1 Y N N ? ? ? 8.594 -1.658 1.399 C9 YP1 20
YP1 C16 C16 C 0 1 N N R ? ? ? -1.379 0.811 0.039 C16 YP1 21
YP1 C17 C17 C 0 1 N N N ? ? ? -2.481 -0.195 -0.300 C17 YP1 22
YP1 C18 C18 C 0 1 Y N N ? ? ? -4.839 -0.437 -0.138 C18 YP1 23
YP1 C19 C19 C 0 1 Y N N ? ? ? -6.115 0.019 0.222 C19 YP1 24
YP1 C20 C20 C 0 1 Y N N ? ? ? -7.231 -0.788 -0.022 C20 YP1 25
YP1 C21 C21 C 0 1 Y N N ? ? ? -7.070 -2.023 -0.616 C21 YP1 26
YP1 C22 C22 C 0 1 Y N N ? ? ? -5.807 -2.468 -0.970 C22 YP1 27
YP1 C23 C23 C 0 1 Y N N ? ? ? -4.697 -1.679 -0.739 C23 YP1 28
YP1 C24 C24 C 0 1 N N N ? ? ? -6.273 1.301 0.838 C24 YP1 29
YP1 H1 H1 H 0 1 N N N ? ? ? 3.509 -0.105 -1.822 H1 YP1 30
YP1 H2 H2 H 0 1 N N N ? ? ? 1.756 -0.388 -1.948 H2 YP1 31
YP1 H3 H3 H 0 1 N N N ? ? ? 2.408 1.256 -2.146 H3 YP1 32
YP1 H4 H4 H 0 1 N N N ? ? ? -1.519 1.841 -1.699 H4 YP1 33
YP1 H5 H5 H 0 1 N N N ? ? ? 4.919 1.833 -1.882 H5 YP1 34
YP1 H6 H6 H 0 1 N N N ? ? ? 3.523 -1.192 0.427 H6 YP1 35
YP1 H7 H7 H 0 1 N N N ? ? ? 2.433 -0.606 1.706 H7 YP1 36
YP1 H8 H8 H 0 1 N N N ? ? ? 1.770 -1.476 0.301 H8 YP1 37
YP1 H9 H9 H 0 1 N N N ? ? ? 3.338 2.477 -0.175 H9 YP1 38
YP1 H10 H10 H 0 1 N N N ? ? ? 3.349 1.702 1.428 H10 YP1 39
YP1 H11 H11 H 0 1 N N N ? ? ? 4.941 -0.013 1.952 H11 YP1 40
YP1 H12 H12 H 0 1 N N N ? ? ? 6.900 -1.369 2.641 H12 YP1 41
YP1 H13 H13 H 0 1 N N N ? ? ? 10.185 -1.804 -0.029 H13 YP1 42
YP1 H14 H14 H 0 1 N N N ? ? ? 7.121 0.927 -2.397 H14 YP1 43
YP1 H15 H15 H 0 1 N N N ? ? ? 9.084 -0.423 -1.705 H15 YP1 44
YP1 H16 H16 H 0 1 N N N ? ? ? 0.074 0.021 -1.341 H16 YP1 45
YP1 H17 H17 H 0 1 N N N ? ? ? 0.085 -0.754 0.262 H17 YP1 46
YP1 H18 H18 H 0 1 N N N ? ? ? 0.941 2.018 -0.260 H18 YP1 47
YP1 H20 H20 H 0 1 N N N ? ? ? 9.103 -2.273 2.127 H20 YP1 48
YP1 H21 H21 H 0 1 N N N ? ? ? -1.433 1.066 1.097 H21 YP1 49
YP1 H22 H22 H 0 1 N N N ? ? ? -2.297 -1.129 0.231 H22 YP1 50
YP1 H23 H23 H 0 1 N N N ? ? ? -2.484 -0.382 -1.374 H23 YP1 51
YP1 H24 H24 H 0 1 N N N ? ? ? -7.932 -2.645 -0.804 H24 YP1 52
YP1 H25 H25 H 0 1 N N N ? ? ? -5.690 -3.436 -1.434 H25 YP1 53
YP1 H26 H26 H 0 1 N N N ? ? ? -3.716 -2.034 -1.018 H26 YP1 54
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
YP1 O2 C16 SING N N 1
YP1 C17 C16 SING N N 2
YP1 C17 O1 SING N N 3
YP1 C16 C15 SING N N 4
YP1 C23 C22 DOUB Y N 5
YP1 C23 C18 SING Y N 6
YP1 C22 C21 SING Y N 7
YP1 C15 N2 SING N N 8
YP1 O1 C18 SING N N 9
YP1 N2 C2 SING N N 10
YP1 C18 C19 DOUB Y N 11
YP1 C21 C20 DOUB Y N 12
YP1 C1 C2 SING N N 13
YP1 C2 C4 SING N N 14
YP1 C2 C3 SING N N 15
YP1 C19 C20 SING Y N 16
YP1 C19 C24 SING N N 17
YP1 C20 CL1 SING N N 18
YP1 C4 C5 SING N N 19
YP1 C24 N1 TRIP N N 20
YP1 C5 C14 DOUB Y N 21
YP1 C5 C6 SING Y N 22
YP1 C14 C13 SING Y N 23
YP1 C6 C7 DOUB Y N 24
YP1 C13 C12 DOUB Y N 25
YP1 C7 C12 SING Y N 26
YP1 C7 C8 SING Y N 27
YP1 C12 C11 SING Y N 28
YP1 C8 C9 DOUB Y N 29
YP1 C11 C10 DOUB Y N 30
YP1 C9 C10 SING Y N 31
YP1 C1 H1 SING N N 32
YP1 C1 H2 SING N N 33
YP1 C1 H3 SING N N 34
YP1 O2 H4 SING N N 35
YP1 C14 H5 SING N N 36
YP1 C3 H6 SING N N 37
YP1 C3 H7 SING N N 38
YP1 C3 H8 SING N N 39
YP1 C4 H9 SING N N 40
YP1 C4 H10 SING N N 41
YP1 C6 H11 SING N N 42
YP1 C8 H12 SING N N 43
YP1 C10 H13 SING N N 44
YP1 C13 H14 SING N N 45
YP1 C11 H15 SING N N 46
YP1 C15 H16 SING N N 47
YP1 C15 H17 SING N N 48
YP1 N2 H18 SING N N 49
YP1 C9 H20 SING N N 50
YP1 C16 H21 SING N N 51
YP1 C17 H22 SING N N 52
YP1 C17 H23 SING N N 53
YP1 C21 H24 SING N N 54
YP1 C22 H25 SING N N 55
YP1 C23 H26 SING N N 56
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
YP1 SMILES ACDLabs 12.01 "N#Cc1c(cccc1Cl)OCC(O)CNC(C)(C)Cc1cc2ccccc2cc1"
YP1 InChI InChI 1.03 "InChI=1S/C24H25ClN2O2/c1-24(2,13-17-10-11-18-6-3-4-7-19(18)12-17)27-15-20(28)16-29-23-9-5-8-22(25)21(23)14-26/h3-12,20,27-28H,13,15-16H2,1-2H3/t20-/m1/s1"
YP1 InChIKey InChI 1.03 PZUJQWHTIRWCID-HXUWFJFHSA-N
YP1 SMILES_CANONICAL CACTVS 3.385 "CC(C)(Cc1ccc2ccccc2c1)NC[C@@H](O)COc3cccc(Cl)c3C#N"
YP1 SMILES CACTVS 3.385 "CC(C)(Cc1ccc2ccccc2c1)NC[CH](O)COc3cccc(Cl)c3C#N"
YP1 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)(Cc1ccc2ccccc2c1)NC[C@H](COc3cccc(c3C#N)Cl)O"
YP1 SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)(Cc1ccc2ccccc2c1)NCC(COc3cccc(c3C#N)Cl)O"
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
YP1 "SYSTEMATIC NAME" ACDLabs 12.01 "2-chloro-6-[(2R)-2-hydroxy-3-{[2-methyl-1-(naphthalen-2-yl)propan-2-yl]amino}propoxy]benzonitrile"
YP1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-chloranyl-6-[(2~{R})-3-[(2-methyl-1-naphthalen-2-yl-propan-2-yl)amino]-2-oxidanyl-propoxy]benzenecarbonitrile"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
YP1 "Create component" 2021-03-18 RCSB
YP1 "Initial release" 2021-06-16 RCSB
##