data_YP2 # _chem_comp.id YP2 _chem_comp.name "2-(2-hydroxy-2-oxoethyl)-1,3-bis(oxidanylidene)isoindole-5-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H7 N O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-12-08 _chem_comp.pdbx_modified_date 2024-07-26 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 249.176 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YP2 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8RD1 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YP2 C4 C1 C 0 1 Y N N N N N -49.277 6.781 -8.697 -1.757 0.840 0.163 C4 YP2 1 YP2 C5 C2 C 0 1 N N N N N N -49.648 5.725 -12.176 1.193 -1.258 0.384 C5 YP2 2 YP2 C6 C3 C 0 1 Y N N N N N -47.775 5.181 -10.428 -1.326 -1.914 -0.052 C6 YP2 3 YP2 C13 C4 C 0 1 N N N N N N -47.530 6.591 -6.885 -4.197 0.512 -0.221 C13 YP2 4 YP2 C1 C5 C 0 1 Y N N N N N -49.706 6.537 -10.003 -0.479 0.328 0.299 C1 YP2 5 YP2 C11 C6 C 0 1 Y N N N N N -47.315 5.456 -9.147 -2.604 -1.399 -0.192 C11 YP2 6 YP2 C12 C7 C 0 1 N N N N N N -51.709 6.823 -13.115 3.196 0.150 0.820 C12 YP2 7 YP2 C14 C8 C 0 1 N N N N N N -53.027 6.040 -13.071 3.892 0.362 -0.500 C14 YP2 8 YP2 C2 C9 C 0 1 Y N N N N N -48.970 5.744 -10.856 -0.261 -1.061 0.190 C2 YP2 9 YP2 C3 C10 C 0 1 N N N N N N -50.882 7.052 -10.747 0.849 0.927 0.554 C3 YP2 10 YP2 C9 C11 C 0 1 Y N N N N N -48.046 6.277 -8.279 -2.827 -0.027 -0.081 C9 YP2 11 YP2 N7 N1 N 0 1 N N N N N N -50.792 6.507 -12.026 1.764 -0.058 0.589 N7 YP2 12 YP2 O10 O1 O 0 1 N N N N N N -49.300 5.204 -13.213 1.773 -2.325 0.361 O10 YP2 13 YP2 O15 O2 O 0 1 N N N N N N -46.476 6.046 -6.487 -4.392 1.707 -0.124 O15 YP2 14 YP2 O16 O3 O 0 1 N N N N N N -48.208 7.375 -6.176 -5.228 -0.322 -0.456 O16 YP2 15 YP2 O17 O4 O 0 1 N N N N N N -53.158 5.092 -12.248 5.217 0.574 -0.533 O17 YP2 16 YP2 O18 O5 O 0 1 N N N N N N -53.903 6.371 -13.896 3.257 0.342 -1.528 O18 YP2 17 YP2 O8 O6 O 0 1 N N N N N N -51.743 7.823 -10.381 1.075 2.110 0.706 O8 YP2 18 YP2 H19 H1 H 0 1 N N N N N N -49.892 7.354 -8.018 -1.929 1.903 0.250 H19 YP2 19 YP2 H20 H2 H 0 1 N N N N N N -47.209 4.536 -11.084 -1.158 -2.977 -0.140 H20 YP2 20 YP2 H21 H3 H 0 1 N N N N N N -46.380 5.030 -8.815 -3.432 -2.064 -0.390 H21 YP2 21 YP2 H23 H4 H 0 1 N N N N N N -51.205 6.598 -14.067 3.615 -0.726 1.315 H23 YP2 22 YP2 H22 H5 H 0 1 N N N N N N -51.943 7.897 -13.069 3.339 1.027 1.451 H22 YP2 23 YP2 H1 H6 H 0 1 N N N N N N -47.794 7.472 -5.326 -6.105 0.077 -0.540 H1 YP2 24 YP2 H2 H7 H 0 1 N N N N N N -54.010 4.688 -12.362 5.619 0.705 -1.403 H2 YP2 25 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YP2 O18 C14 DOUB N N 1 YP2 O10 C5 DOUB N N 2 YP2 C12 C14 SING N N 3 YP2 C12 N7 SING N N 4 YP2 C14 O17 SING N N 5 YP2 C5 N7 SING N N 6 YP2 C5 C2 SING N N 7 YP2 N7 C3 SING N N 8 YP2 C2 C6 DOUB Y N 9 YP2 C2 C1 SING Y N 10 YP2 C3 O8 DOUB N N 11 YP2 C3 C1 SING N N 12 YP2 C6 C11 SING Y N 13 YP2 C1 C4 DOUB Y N 14 YP2 C11 C9 DOUB Y N 15 YP2 C4 C9 SING Y N 16 YP2 C9 C13 SING N N 17 YP2 C13 O15 DOUB N N 18 YP2 C13 O16 SING N N 19 YP2 C4 H19 SING N N 20 YP2 C6 H20 SING N N 21 YP2 C11 H21 SING N N 22 YP2 C12 H23 SING N N 23 YP2 C12 H22 SING N N 24 YP2 O16 H1 SING N N 25 YP2 O17 H2 SING N N 26 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YP2 InChI InChI 1.06 "InChI=1S/C11H7NO6/c13-8(14)4-12-9(15)6-2-1-5(11(17)18)3-7(6)10(12)16/h1-3H,4H2,(H,13,14)(H,17,18)" YP2 InChIKey InChI 1.06 RPFFHROJAGNUIW-UHFFFAOYSA-N YP2 SMILES_CANONICAL CACTVS 3.385 "OC(=O)CN1C(=O)c2ccc(cc2C1=O)C(O)=O" YP2 SMILES CACTVS 3.385 "OC(=O)CN1C(=O)c2ccc(cc2C1=O)C(O)=O" YP2 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1C(=O)O)C(=O)N(C2=O)CC(=O)O" YP2 SMILES "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1C(=O)O)C(=O)N(C2=O)CC(=O)O" # _pdbx_chem_comp_identifier.comp_id YP2 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-(2-hydroxy-2-oxoethyl)-1,3-bis(oxidanylidene)isoindole-5-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YP2 "Create component" 2023-12-08 PDBE YP2 "Initial release" 2024-07-31 RCSB #