data_YPF # _chem_comp.id YPF _chem_comp.name "4-[6-(4-oxidanylbut-1-ynyl)phenanthren-3-yl]but-3-ynyl dihydrogen phosphate" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H19 O5 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2016-07-22 _chem_comp.pdbx_modified_date 2016-08-12 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 394.357 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YPF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5HNF _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YPF OAY O1 O 0 1 N N N -9.225 -30.974 9.014 5.779 0.308 -0.541 OAY YPF 1 YPF CAU C1 C 0 1 N N N -7.913 -31.506 12.513 1.661 -2.161 -0.760 CAU YPF 2 YPF CAT C2 C 0 1 N N N -8.543 -27.590 18.981 -5.287 5.378 -0.129 CAT YPF 3 YPF CAS C3 C 0 1 N N N -8.800 -28.599 20.097 -3.907 4.749 -0.332 CAS YPF 4 YPF CAR C4 C 0 1 N N N -8.307 -29.877 19.672 -4.006 3.288 -0.175 CAR YPF 5 YPF CAN C5 C 0 1 Y N N -7.452 -32.573 13.331 0.364 -2.685 -0.452 CAN YPF 6 YPF CAP C6 C 0 1 Y N N -6.998 -33.745 12.738 0.193 -4.065 -0.271 CAP YPF 7 YPF CAO C7 C 0 1 Y N N -6.551 -34.800 13.523 -1.031 -4.582 0.022 CAO YPF 8 YPF CAM C8 C 0 1 Y N N -7.453 -32.451 14.714 -0.719 -1.822 -0.329 CAM YPF 9 YPF CAD C9 C 0 1 Y N N -7.455 -32.196 17.429 -3.046 -0.086 -0.039 CAD YPF 10 YPF CAF C10 C 0 1 Y N N -7.004 -33.380 16.870 -3.148 -1.467 0.111 CAF YPF 11 YPF CAI C11 C 0 1 Y N N -7.001 -33.506 15.492 -1.977 -2.340 -0.029 CAI YPF 12 YPF CAJ C12 C 0 1 Y N N -6.547 -34.679 14.906 -2.142 -3.734 0.147 CAJ YPF 13 YPF CAH C13 C 0 1 Y N N -6.098 -35.727 15.703 -3.420 -4.255 0.451 CAH YPF 14 YPF CAG C14 C 0 1 Y N N -6.106 -35.598 17.088 -4.498 -3.454 0.575 CAG YPF 15 YPF CAE C15 C 0 1 Y N N -6.557 -34.419 17.674 -4.401 -2.054 0.405 CAE YPF 16 YPF CAB C16 C 0 1 Y N N -6.565 -34.268 19.057 -5.532 -1.234 0.542 CAB YPF 17 YPF CAA C17 C 0 1 Y N N -7.024 -33.079 19.625 -5.420 0.114 0.393 CAA YPF 18 YPF CAC C18 C 0 1 Y N N -7.466 -32.044 18.805 -4.181 0.703 0.102 CAC YPF 19 YPF CAQ C19 C 0 1 N N N -7.937 -30.830 19.321 -4.085 2.124 -0.050 CAQ YPF 20 YPF CAV C20 C 0 1 N N N -8.310 -30.579 11.772 2.724 -1.732 -1.013 CAV YPF 21 YPF CAW C21 C 0 1 N N N -8.775 -29.494 10.889 4.057 -1.194 -1.329 CAW YPF 22 YPF CAX C22 C 0 1 N N N -9.826 -30.041 9.919 4.485 -0.215 -0.234 CAX YPF 23 YPF OAZ O2 O 0 1 N N N -9.636 -26.672 18.919 -5.191 6.796 -0.281 OAZ YPF 24 YPF OBB O3 O 0 1 N N N -11.266 -31.092 7.511 5.718 2.753 0.422 OBB YPF 25 YPF PBA P1 P 0 1 N N N -10.206 -31.904 8.151 6.542 1.370 0.398 PBA YPF 26 YPF OBD O4 O 0 1 N N N -9.304 -32.717 7.100 6.641 0.831 1.773 OBD YPF 27 YPF O1 O5 O 0 1 N Y N -11.184 -32.499 9.237 8.020 1.636 -0.182 O1 YPF 28 YPF H1 H1 H 0 1 N N N -8.451 -28.119 18.021 -5.980 4.979 -0.869 H1 YPF 29 YPF H2 H2 H 0 1 N N N -7.612 -27.041 19.188 -5.650 5.143 0.872 H2 YPF 30 YPF H3 H3 H 0 1 N N N -8.276 -28.284 21.011 -3.544 4.983 -1.332 H3 YPF 31 YPF H4 H4 H 0 1 N N N -9.880 -28.665 20.297 -3.214 5.148 0.409 H4 YPF 32 YPF H5 H5 H 0 1 N N N -6.993 -33.836 11.662 1.043 -4.725 -0.366 H5 YPF 33 YPF H6 H6 H 0 1 N N N -6.207 -35.712 13.059 -1.148 -5.647 0.159 H6 YPF 34 YPF H7 H7 H 0 1 N N N -7.803 -31.542 15.180 -0.586 -0.759 -0.464 H7 YPF 35 YPF H8 H8 H 0 1 N N N -7.797 -31.393 16.793 -2.092 0.367 -0.263 H8 YPF 36 YPF H9 H9 H 0 1 N N N -5.744 -36.640 15.247 -3.536 -5.320 0.588 H9 YPF 37 YPF H10 H10 H 0 1 N N N -5.762 -36.413 17.708 -5.457 -3.892 0.808 H10 YPF 38 YPF H11 H11 H 0 1 N N N -6.216 -35.070 19.690 -6.492 -1.673 0.766 H11 YPF 39 YPF H12 H12 H 0 1 N N N -7.036 -32.962 20.699 -6.295 0.738 0.501 H12 YPF 40 YPF H13 H13 H 0 1 N N N -7.923 -29.094 10.319 4.775 -2.012 -1.386 H13 YPF 41 YPF H14 H14 H 0 1 N N N -9.219 -28.692 11.496 4.022 -0.675 -2.287 H14 YPF 42 YPF H15 H15 H 0 1 N N N -10.261 -29.208 9.347 4.521 -0.734 0.724 H15 YPF 43 YPF H16 H16 H 0 1 N N N -10.619 -30.547 10.490 3.767 0.603 -0.177 H16 YPF 44 YPF H17 H17 H 0 1 N N N -9.481 -26.041 18.226 -6.031 7.261 -0.165 H17 YPF 45 YPF H18 H18 H 0 1 N N N -11.222 -31.200 6.568 5.613 3.164 -0.447 H18 YPF 46 YPF H19 H19 H 0 1 N N N -11.172 -33.448 9.189 8.538 2.268 0.335 H19 YPF 47 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YPF OBD PBA DOUB N N 1 YPF OBB PBA SING N N 2 YPF PBA OAY SING N N 3 YPF OAY CAX SING N N 4 YPF CAX CAW SING N N 5 YPF CAW CAV SING N N 6 YPF CAV CAU TRIP N N 7 YPF CAU CAN SING N N 8 YPF CAP CAN DOUB Y N 9 YPF CAP CAO SING Y N 10 YPF CAN CAM SING Y N 11 YPF CAO CAJ DOUB Y N 12 YPF CAM CAI DOUB Y N 13 YPF CAJ CAI SING Y N 14 YPF CAJ CAH SING Y N 15 YPF CAI CAF SING Y N 16 YPF CAH CAG DOUB Y N 17 YPF CAF CAD DOUB Y N 18 YPF CAF CAE SING Y N 19 YPF CAG CAE SING Y N 20 YPF CAD CAC SING Y N 21 YPF CAE CAB DOUB Y N 22 YPF CAC CAQ SING N N 23 YPF CAC CAA DOUB Y N 24 YPF OAZ CAT SING N N 25 YPF CAT CAS SING N N 26 YPF CAB CAA SING Y N 27 YPF CAQ CAR TRIP N N 28 YPF CAR CAS SING N N 29 YPF PBA O1 SING N N 30 YPF CAT H1 SING N N 31 YPF CAT H2 SING N N 32 YPF CAS H3 SING N N 33 YPF CAS H4 SING N N 34 YPF CAP H5 SING N N 35 YPF CAO H6 SING N N 36 YPF CAM H7 SING N N 37 YPF CAD H8 SING N N 38 YPF CAH H9 SING N N 39 YPF CAG H10 SING N N 40 YPF CAB H11 SING N N 41 YPF CAA H12 SING N N 42 YPF CAW H13 SING N N 43 YPF CAW H14 SING N N 44 YPF CAX H15 SING N N 45 YPF CAX H16 SING N N 46 YPF OAZ H17 SING N N 47 YPF OBB H18 SING N N 48 YPF O1 H19 SING N N 49 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YPF InChI InChI 1.03 "InChI=1S/C22H19O5P/c23-13-3-1-5-17-7-9-19-11-12-20-10-8-18(16-22(20)21(19)15-17)6-2-4-14-27-28(24,25)26/h7-12,15-16,23H,3-4,13-14H2,(H2,24,25,26)" YPF InChIKey InChI 1.03 JDPQANOZGIUPKU-UHFFFAOYSA-N YPF SMILES_CANONICAL CACTVS 3.385 "OCCC#Cc1ccc2ccc3ccc(cc3c2c1)C#CCCO[P](O)(O)=O" YPF SMILES CACTVS 3.385 "OCCC#Cc1ccc2ccc3ccc(cc3c2c1)C#CCCO[P](O)(O)=O" YPF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.5 "c1cc2ccc(cc2c3c1ccc(c3)C#CCCO)C#CCCOP(=O)(O)O" YPF SMILES "OpenEye OEToolkits" 2.0.5 "c1cc2ccc(cc2c3c1ccc(c3)C#CCCO)C#CCCOP(=O)(O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YPF "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.5 "4-[6-(4-oxidanylbut-1-ynyl)phenanthren-3-yl]but-3-ynyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YPF "Create component" 2016-07-22 EBI YPF "Initial release" 2016-08-17 RCSB #