data_YPI # _chem_comp.id YPI _chem_comp.name "[(3aR,3bR,6aS,6bS)-5-(1H-benzotriazole-5-carbonyl)octahydrocyclobuta[1,2-c:3,4-c']dipyrrol-2(1H)-yl][1-(2,2,2-trifluoroethoxy)isoquinolin-3-yl]methanone" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H23 F3 N6 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-19 _chem_comp.pdbx_modified_date 2024-12-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 536.505 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YPI _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7G40 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YPI N1 N1 N 0 1 N N N N N N -14.142 8.765 47.957 1.341 -2.115 0.719 N1 YPI 1 YPI C2 C1 C 0 1 N N N N N N -14.749 9.581 49.005 0.116 -2.897 0.922 C2 YPI 2 YPI C3 C2 C 0 1 N N S N N N -13.582 10.156 49.816 -1.054 -2.023 0.435 C3 YPI 3 YPI C4 C3 C 0 1 N N R N N N -12.279 9.780 49.024 -0.538 -0.576 0.633 C4 YPI 4 YPI C5 C4 C 0 1 N N N N N N -12.750 9.105 47.739 0.993 -0.700 0.556 C5 YPI 5 YPI C6 C5 C 0 1 N N S N N N -13.270 11.652 49.596 -1.031 -1.744 -1.073 C6 YPI 6 YPI C7 C6 C 0 1 N N R N N N -11.940 11.274 48.846 -1.188 -0.245 -0.721 C7 YPI 7 YPI C8 C7 C 0 1 N N N N N N -12.818 12.428 50.832 -2.349 -2.091 -1.788 C8 YPI 8 YPI N9 N2 N 0 1 N N N N N N -11.412 12.769 50.614 -3.367 -1.172 -1.267 N9 YPI 9 YPI C10 C8 C 0 1 N N N N N N -10.797 11.815 49.708 -2.707 -0.029 -0.627 C10 YPI 10 YPI C15 C9 C 0 1 N N N N N N -14.803 7.766 47.270 2.591 -2.618 0.691 C15 YPI 11 YPI O16 O1 O 0 1 N N N N N N -16.004 7.492 47.491 2.770 -3.811 0.843 O16 YPI 12 YPI C17 C10 C 0 1 N N N N N N -10.710 13.517 51.566 -4.699 -1.349 -1.363 C17 YPI 13 YPI C18 C11 C 0 1 Y N N N N N -9.492 12.964 52.251 -5.620 -0.401 -0.702 C18 YPI 14 YPI O19 O2 O 0 1 N N N N N N -11.124 14.658 51.865 -5.144 -2.289 -1.992 O19 YPI 15 YPI C20 C12 C 0 1 Y N N N N N -9.484 11.641 52.745 -5.372 0.977 -0.773 C20 YPI 16 YPI C21 C13 C 0 1 Y N N N N N -8.384 11.097 53.393 -6.214 1.862 -0.168 C21 YPI 17 YPI C22 C14 C 0 1 Y N N N N N -8.383 13.809 52.404 -6.731 -0.879 -0.018 C22 YPI 18 YPI C23 C15 C 0 1 Y N N N N N -7.258 13.288 53.058 -7.598 0.023 0.604 C23 YPI 19 YPI C24 C16 C 0 1 Y N N N N N -7.266 11.921 53.556 -7.329 1.403 0.528 C24 YPI 20 YPI N25 N3 N 0 1 Y N N N N N -5.997 11.774 54.137 -8.336 2.025 1.224 N25 YPI 21 YPI N26 N4 N 0 1 Y N N N N N -5.307 12.926 54.002 -9.178 1.013 1.705 N26 YPI 22 YPI N27 N5 N 0 1 Y N N N N N -5.977 13.815 53.400 -8.732 -0.133 1.327 N27 YPI 23 YPI C28 C17 C 0 1 Y N N N N N -13.979 7.038 46.226 3.746 -1.719 0.477 C28 YPI 24 YPI N29 N6 N 0 1 Y N N N N N -13.341 7.836 45.315 3.532 -0.410 0.312 N29 YPI 25 YPI C30 C18 C 0 1 Y N N N N N -12.607 7.234 44.388 4.509 0.447 0.118 C30 YPI 26 YPI C31 C19 C 0 1 Y N N N N N -13.864 5.654 46.226 5.022 -2.251 0.457 C31 YPI 27 YPI C32 C20 C 0 1 Y N N N N N -13.059 5.018 45.227 6.111 -1.385 0.252 C32 YPI 28 YPI C33 C21 C 0 1 Y N N N N N -12.395 5.820 44.263 5.848 -0.002 0.075 C33 YPI 29 YPI C34 C22 C 0 1 Y N N N N N -11.588 5.236 43.253 6.917 0.879 -0.131 C34 YPI 30 YPI C35 C23 C 0 1 Y N N N N N -11.441 3.864 43.202 8.192 0.395 -0.163 C35 YPI 31 YPI C36 C24 C 0 1 Y N N N N N -12.104 3.053 44.159 8.449 -0.963 0.005 C36 YPI 32 YPI C37 C25 C 0 1 Y N N N N N -12.890 3.612 45.148 7.434 -1.847 0.220 C37 YPI 33 YPI O38 O3 O 0 1 N N N N N N -11.944 7.995 43.451 4.231 1.764 -0.043 O38 YPI 34 YPI C39 C26 C 0 1 N N N N N N -11.526 9.266 43.960 2.856 2.148 0.010 C39 YPI 35 YPI C40 C27 C 0 1 N N N N N N -10.906 9.943 42.704 2.741 3.661 -0.190 C40 YPI 36 YPI F41 F1 F 0 1 N N N N N N -11.517 9.561 41.537 3.274 4.008 -1.436 F41 YPI 37 YPI F42 F2 F 0 1 N N N N N N -10.993 11.316 42.735 1.395 4.037 -0.138 F42 YPI 38 YPI F43 F3 F 0 1 N N N N N N -9.579 9.649 42.544 3.450 4.320 0.820 F43 YPI 39 YPI H45 H1 H 0 1 N N N N N N -15.344 10.393 48.562 0.160 -3.818 0.341 H45 YPI 40 YPI H44 H2 H 0 1 N N N N N N -15.393 8.962 49.647 -0.007 -3.128 1.980 H44 YPI 41 YPI H12 H3 H 0 1 N N N N N N -13.565 9.843 50.870 -2.022 -2.261 0.876 H12 YPI 42 YPI H11 H4 H 0 1 N N N N N N -11.544 9.207 49.608 -0.914 -0.039 1.503 H11 YPI 43 YPI H46 H5 H 0 1 N N N N N N -12.160 8.197 47.545 1.450 -0.114 1.353 H46 YPI 44 YPI H47 H6 H 0 1 N N N N N N -12.653 9.794 46.887 1.344 -0.343 -0.412 H47 YPI 45 YPI H14 H7 H 0 1 N N N N N N -14.001 12.180 48.966 -0.119 -2.030 -1.598 H14 YPI 46 YPI H13 H8 H 0 1 N N N N N N -11.915 11.608 47.798 -0.648 0.463 -1.350 H13 YPI 47 YPI H49 H9 H 0 1 N N N N N N -13.418 13.343 50.947 -2.237 -1.953 -2.864 H49 YPI 48 YPI H48 H10 H 0 1 N N N N N N -12.923 11.805 51.732 -2.631 -3.121 -1.572 H48 YPI 49 YPI H50 H11 H 0 1 N N N N N N -10.322 10.999 50.273 -3.007 0.032 0.419 H50 YPI 50 YPI H51 H12 H 0 1 N N N N N N -10.044 12.312 49.079 -2.981 0.891 -1.143 H51 YPI 51 YPI H52 H13 H 0 1 N N N N N N -10.365 11.031 52.614 -4.509 1.339 -1.311 H52 YPI 52 YPI H53 H14 H 0 1 N N N N N N -8.391 10.080 53.756 -6.014 2.922 -0.228 H53 YPI 53 YPI H54 H15 H 0 1 N N N N N N -8.395 14.823 52.032 -6.923 -1.941 0.032 H54 YPI 54 YPI H55 H16 H 0 1 N N N N N N -5.657 10.945 54.582 -8.443 2.980 1.357 H55 YPI 55 YPI H56 H17 H 0 1 N N N N N N -14.376 5.064 46.971 5.179 -3.311 0.597 H56 YPI 56 YPI H57 H18 H 0 1 N N N N N N -11.091 5.862 42.527 6.733 1.935 -0.263 H57 YPI 57 YPI H58 H19 H 0 1 N N N N N N -10.825 3.411 42.439 9.015 1.076 -0.322 H58 YPI 58 YPI H59 H20 H 0 1 N N N N N N -11.992 1.980 44.113 9.468 -1.319 -0.025 H59 YPI 59 YPI H60 H21 H 0 1 N N N N N N -13.380 2.973 45.867 7.647 -2.898 0.354 H60 YPI 60 YPI H61 H22 H 0 1 N N N N N N -12.382 9.843 44.341 2.304 1.634 -0.777 H61 YPI 61 YPI H62 H23 H 0 1 N N N N N N -10.778 9.148 44.758 2.441 1.878 0.981 H62 YPI 62 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YPI N1 C2 SING N N 1 YPI C2 C3 SING N N 2 YPI C3 C4 SING N N 3 YPI N1 C5 SING N N 4 YPI C4 C5 SING N N 5 YPI C3 C6 SING N N 6 YPI C4 C7 SING N N 7 YPI C6 C7 SING N N 8 YPI C6 C8 SING N N 9 YPI C8 N9 SING N N 10 YPI C7 C10 SING N N 11 YPI N9 C10 SING N N 12 YPI N1 C15 SING N N 13 YPI C15 O16 DOUB N N 14 YPI N9 C17 SING N N 15 YPI C17 C18 SING N N 16 YPI C17 O19 DOUB N N 17 YPI C18 C20 DOUB Y N 18 YPI C20 C21 SING Y N 19 YPI C18 C22 SING Y N 20 YPI C22 C23 DOUB Y N 21 YPI C21 C24 DOUB Y N 22 YPI C23 C24 SING Y N 23 YPI C24 N25 SING Y N 24 YPI N25 N26 SING Y N 25 YPI C23 N27 SING Y N 26 YPI N26 N27 DOUB Y N 27 YPI C15 C28 SING N N 28 YPI C28 N29 DOUB Y N 29 YPI N29 C30 SING Y N 30 YPI C28 C31 SING Y N 31 YPI C31 C32 DOUB Y N 32 YPI C30 C33 DOUB Y N 33 YPI C32 C33 SING Y N 34 YPI C33 C34 SING Y N 35 YPI C34 C35 DOUB Y N 36 YPI C35 C36 SING Y N 37 YPI C32 C37 SING Y N 38 YPI C36 C37 DOUB Y N 39 YPI C30 O38 SING N N 40 YPI O38 C39 SING N N 41 YPI C39 C40 SING N N 42 YPI C40 F41 SING N N 43 YPI C40 F42 SING N N 44 YPI C40 F43 SING N N 45 YPI C2 H45 SING N N 46 YPI C2 H44 SING N N 47 YPI C3 H12 SING N N 48 YPI C4 H11 SING N N 49 YPI C5 H46 SING N N 50 YPI C5 H47 SING N N 51 YPI C6 H14 SING N N 52 YPI C7 H13 SING N N 53 YPI C8 H49 SING N N 54 YPI C8 H48 SING N N 55 YPI C10 H50 SING N N 56 YPI C10 H51 SING N N 57 YPI C20 H52 SING N N 58 YPI C21 H53 SING N N 59 YPI C22 H54 SING N N 60 YPI N25 H55 SING N N 61 YPI C31 H56 SING N N 62 YPI C34 H57 SING N N 63 YPI C35 H58 SING N N 64 YPI C36 H59 SING N N 65 YPI C37 H60 SING N N 66 YPI C39 H61 SING N N 67 YPI C39 H62 SING N N 68 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YPI SMILES ACDLabs 12.01 "FC(F)(F)COc1nc(cc2ccccc21)C(=O)N1CC2C3CN(CC3C2C1)C(=O)c1cc2nn[NH]c2cc1" YPI InChI InChI 1.06 "InChI=1S/C27H23F3N6O3/c28-27(29,30)13-39-24-16-4-2-1-3-14(16)7-23(31-24)26(38)36-11-19-17-9-35(10-18(17)20(19)12-36)25(37)15-5-6-21-22(8-15)33-34-32-21/h1-8,17-20H,9-13H2,(H,32,33,34)" YPI InChIKey InChI 1.06 SVMYVCAWPRQJHP-UHFFFAOYSA-N YPI SMILES_CANONICAL CACTVS 3.385 "FC(F)(F)COc1nc(cc2ccccc12)C(=O)N3C[C@@H]4[C@H]5CN(C[C@H]5[C@@H]4C3)C(=O)c6ccc7[nH]nnc7c6" YPI SMILES CACTVS 3.385 "FC(F)(F)COc1nc(cc2ccccc12)C(=O)N3C[CH]4[CH]5CN(C[CH]5[CH]4C3)C(=O)c6ccc7[nH]nnc7c6" YPI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)cc(nc2OCC(F)(F)F)C(=O)N3C[C@H]4[C@@H]5CN(C[C@@H]5[C@H]4C3)C(=O)c6ccc7c(c6)nn[nH]7" YPI SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)cc(nc2OCC(F)(F)F)C(=O)N3CC4C5CN(CC5C4C3)C(=O)c6ccc7c(c6)nn[nH]7" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YPI "SYSTEMATIC NAME" ACDLabs 12.01 "[(3aR,3bR,6aS,6bS)-5-(1H-benzotriazole-5-carbonyl)octahydrocyclobuta[1,2-c:3,4-c']dipyrrol-2(1H)-yl][1-(2,2,2-trifluoroethoxy)isoquinolin-3-yl]methanone" YPI "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "1~{H}-benzotriazol-5-yl-[(1~{R},2~{S},6~{R},7~{S})-9-[1-[2,2,2-tris(fluoranyl)ethoxy]isoquinolin-3-yl]carbonyl-4,9-diazatricyclo[5.3.0.0^{2,6}]decan-4-yl]methanone" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YPI "Create component" 2023-06-19 RCSB YPI "Initial release" 2024-12-18 RCSB #