data_YPM # _chem_comp.id YPM _chem_comp.name "(1s,3R,5S,7s)-N-[(1r,4r)-4-aminocyclohexyl]-3,5-diphenyladamantane-1-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H36 N2 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-03-19 _chem_comp.pdbx_modified_date 2021-11-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 428.609 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YPM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7LYY _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YPM C10 C1 C 0 1 N N N -41.995 17.695 -7.879 4.794 1.059 0.405 C10 YPM 1 YPM C11 C2 C 0 1 N N N -45.107 14.258 -7.356 0.200 -0.383 -0.355 C11 YPM 2 YPM C02 C3 C 0 1 N N N -44.717 15.712 -7.592 1.572 -0.696 0.184 C02 YPM 3 YPM C04 C4 C 0 1 N N N -43.273 17.614 -7.032 3.954 -0.219 0.378 C04 YPM 4 YPM C05 C5 C 0 1 N N N -43.053 18.366 -5.708 4.631 -1.256 -0.521 C05 YPM 5 YPM C06 C6 C 0 1 N N N -42.767 19.851 -5.976 6.024 -1.573 0.027 C06 YPM 6 YPM C07 C7 C 0 1 N N N -41.591 20.070 -6.953 6.864 -0.295 0.054 C07 YPM 7 YPM C09 C8 C 0 1 N N N -41.674 19.167 -8.209 6.187 0.742 0.952 C09 YPM 8 YPM C12 C9 C 0 1 N N N -45.997 13.806 -8.533 -0.222 1.014 0.102 C12 YPM 9 YPM C13 C10 C 0 1 N N R -46.406 12.324 -8.383 -1.615 1.332 -0.445 C13 YPM 10 YPM C14 C11 C 0 1 N N N -45.115 11.480 -8.310 -1.585 1.283 -1.974 C14 YPM 11 YPM C15 C12 C 0 1 Y N N -47.286 11.882 -9.560 -2.030 2.708 0.005 C15 YPM 12 YPM C16 C13 C 0 1 Y N N -48.556 11.345 -9.318 -1.273 3.809 -0.350 C16 YPM 13 YPM C17 C14 C 0 1 Y N N -49.371 10.925 -10.359 -1.654 5.072 0.064 C17 YPM 14 YPM C18 C15 C 0 1 Y N N -48.940 11.042 -11.677 -2.792 5.234 0.833 C18 YPM 15 YPM C19 C16 C 0 1 Y N N -47.683 11.570 -11.938 -3.549 4.133 1.187 C19 YPM 16 YPM C20 C17 C 0 1 Y N N -46.869 11.981 -10.888 -3.171 2.871 0.769 C20 YPM 17 YPM C21 C18 C 0 1 N N N -47.173 12.169 -7.051 -2.616 0.300 0.079 C21 YPM 18 YPM C22 C19 C 0 1 N N S -46.290 12.595 -5.848 -2.194 -1.098 -0.379 C22 YPM 19 YPM C23 C20 C 0 1 N N N -44.994 11.752 -5.820 -2.164 -1.147 -1.908 C23 YPM 20 YPM C24 C21 C 0 1 N N N -44.223 11.933 -7.133 -1.163 -0.115 -2.432 C24 YPM 21 YPM C25 C22 C 0 1 N N N -43.825 13.408 -7.305 0.229 -0.432 -1.884 C25 YPM 22 YPM C26 C23 C 0 1 Y N N -47.055 12.282 -4.553 -3.180 -2.114 0.137 C26 YPM 23 YPM C27 C24 C 0 1 Y N N -48.373 11.827 -4.619 -4.262 -1.705 0.894 C27 YPM 24 YPM C28 C25 C 0 1 Y N N -49.091 11.527 -3.472 -5.167 -2.637 1.367 C28 YPM 25 YPM C29 C26 C 0 1 Y N N -48.505 11.665 -2.221 -4.989 -3.978 1.084 C29 YPM 26 YPM C30 C27 C 0 1 Y N N -47.195 12.103 -2.135 -3.907 -4.387 0.326 C30 YPM 27 YPM C31 C28 C 0 1 Y N N -46.479 12.406 -3.290 -3.005 -3.455 -0.150 C31 YPM 28 YPM C32 C29 C 0 1 N N N -45.887 14.081 -6.037 -0.801 -1.415 0.169 C32 YPM 29 YPM N03 N1 N 0 1 N N N -43.703 16.212 -6.846 2.620 0.085 -0.146 N03 YPM 30 YPM N08 N2 N 0 1 N N N -41.584 21.486 -7.386 8.202 -0.599 0.580 N08 YPM 31 YPM O01 O1 O 0 1 N N N -45.283 16.392 -8.438 1.733 -1.650 0.915 O01 YPM 32 YPM H1 H1 H 0 1 N N N -42.142 17.135 -8.815 4.883 1.457 -0.606 H1 YPM 33 YPM H2 H2 H 0 1 N N N -41.157 17.256 -7.317 4.312 1.798 1.045 H2 YPM 34 YPM H3 H3 H 0 1 N N N -44.065 18.143 -7.582 3.865 -0.617 1.389 H3 YPM 35 YPM H4 H4 H 0 1 N N N -43.956 18.277 -5.087 4.032 -2.166 -0.540 H4 YPM 36 YPM H5 H5 H 0 1 N N N -42.198 17.922 -5.177 4.720 -0.858 -1.531 H5 YPM 37 YPM H6 H6 H 0 1 N N N -42.525 20.340 -5.021 5.935 -1.971 1.038 H6 YPM 38 YPM H7 H7 H 0 1 N N N -43.670 20.310 -6.405 6.506 -2.312 -0.613 H7 YPM 39 YPM H8 H8 H 0 1 N N N -40.652 19.846 -6.425 6.953 0.103 -0.957 H8 YPM 40 YPM H9 H9 H 0 1 N N N -40.707 19.205 -8.732 6.786 1.653 0.971 H9 YPM 41 YPM H10 H10 H 0 1 N N N -42.463 19.557 -8.869 6.098 0.344 1.963 H10 YPM 42 YPM H11 H11 H 0 1 N N N -45.440 13.932 -9.473 -0.243 1.049 1.191 H11 YPM 43 YPM H12 H12 H 0 1 N N N -46.904 14.428 -8.558 0.491 1.749 -0.271 H12 YPM 44 YPM H13 H13 H 0 1 N N N -45.384 10.422 -8.171 -2.578 1.508 -2.364 H13 YPM 45 YPM H14 H14 H 0 1 N N N -44.556 11.596 -9.250 -0.872 2.018 -2.348 H14 YPM 46 YPM H15 H15 H 0 1 N N N -48.908 11.256 -8.301 -0.384 3.683 -0.950 H15 YPM 47 YPM H16 H16 H 0 1 N N N -50.343 10.506 -10.146 -1.062 5.932 -0.213 H16 YPM 48 YPM H17 H17 H 0 1 N N N -49.577 10.725 -12.489 -3.089 6.221 1.156 H17 YPM 49 YPM H18 H18 H 0 1 N N N -47.337 11.662 -12.957 -4.437 4.260 1.788 H18 YPM 50 YPM H19 H19 H 0 1 N N N -45.892 12.386 -11.105 -3.763 2.011 1.046 H19 YPM 51 YPM H20 H20 H 0 1 N N N -48.073 12.801 -7.078 -2.637 0.335 1.168 H20 YPM 52 YPM H21 H21 H 0 1 N N N -47.468 11.117 -6.926 -3.608 0.526 -0.311 H21 YPM 53 YPM H22 H22 H 0 1 N N N -45.252 10.690 -5.693 -1.864 -2.143 -2.234 H22 YPM 54 YPM H23 H23 H 0 1 N N N -44.364 12.079 -4.980 -3.157 -0.921 -2.298 H23 YPM 55 YPM H24 H24 H 0 1 N N N -43.315 11.313 -7.109 -1.142 -0.150 -3.521 H24 YPM 56 YPM H25 H25 H 0 1 N N N -43.260 13.533 -8.240 0.943 0.303 -2.257 H25 YPM 57 YPM H26 H26 H 0 1 N N N -43.203 13.726 -6.455 0.530 -1.428 -2.210 H26 YPM 58 YPM H27 H27 H 0 1 N N N -48.843 11.706 -5.584 -4.401 -0.657 1.115 H27 YPM 59 YPM H28 H28 H 0 1 N N N -50.112 11.184 -3.552 -6.012 -2.317 1.959 H28 YPM 60 YPM H29 H29 H 0 1 N N N -49.064 11.434 -1.327 -5.695 -4.707 1.454 H29 YPM 61 YPM H30 H30 H 0 1 N N N -46.726 12.210 -1.168 -3.769 -5.435 0.105 H30 YPM 62 YPM H31 H31 H 0 1 N N N -45.457 12.744 -3.205 -2.162 -3.774 -0.745 H31 YPM 63 YPM H32 H32 H 0 1 N N N -45.253 14.395 -5.195 -0.501 -2.411 -0.157 H32 YPM 64 YPM H33 H33 H 0 1 N N N -46.794 14.703 -6.065 -0.822 -1.380 1.258 H33 YPM 65 YPM H34 H34 H 0 1 N N N -43.246 15.634 -6.170 2.491 0.848 -0.731 H34 YPM 66 YPM H35 H35 H 0 1 N N N -41.531 22.080 -6.583 8.777 0.229 0.607 H35 YPM 67 YPM H36 H36 H 0 1 N N N -40.793 21.650 -7.975 8.143 -1.029 1.490 H36 YPM 68 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YPM C19 C18 DOUB Y N 1 YPM C19 C20 SING Y N 2 YPM C18 C17 SING Y N 3 YPM C20 C15 DOUB Y N 4 YPM C17 C16 DOUB Y N 5 YPM C15 C16 SING Y N 6 YPM C15 C13 SING N N 7 YPM C12 C13 SING N N 8 YPM C12 C11 SING N N 9 YPM O01 C02 DOUB N N 10 YPM C13 C14 SING N N 11 YPM C13 C21 SING N N 12 YPM C14 C24 SING N N 13 YPM C09 C10 SING N N 14 YPM C09 C07 SING N N 15 YPM C10 C04 SING N N 16 YPM C02 C11 SING N N 17 YPM C02 N03 SING N N 18 YPM N08 C07 SING N N 19 YPM C11 C25 SING N N 20 YPM C11 C32 SING N N 21 YPM C25 C24 SING N N 22 YPM C24 C23 SING N N 23 YPM C21 C22 SING N N 24 YPM C04 N03 SING N N 25 YPM C04 C05 SING N N 26 YPM C07 C06 SING N N 27 YPM C32 C22 SING N N 28 YPM C06 C05 SING N N 29 YPM C22 C23 SING N N 30 YPM C22 C26 SING N N 31 YPM C27 C26 DOUB Y N 32 YPM C27 C28 SING Y N 33 YPM C26 C31 SING Y N 34 YPM C28 C29 DOUB Y N 35 YPM C31 C30 DOUB Y N 36 YPM C29 C30 SING Y N 37 YPM C10 H1 SING N N 38 YPM C10 H2 SING N N 39 YPM C04 H3 SING N N 40 YPM C05 H4 SING N N 41 YPM C05 H5 SING N N 42 YPM C06 H6 SING N N 43 YPM C06 H7 SING N N 44 YPM C07 H8 SING N N 45 YPM C09 H9 SING N N 46 YPM C09 H10 SING N N 47 YPM C12 H11 SING N N 48 YPM C12 H12 SING N N 49 YPM C14 H13 SING N N 50 YPM C14 H14 SING N N 51 YPM C16 H15 SING N N 52 YPM C17 H16 SING N N 53 YPM C18 H17 SING N N 54 YPM C19 H18 SING N N 55 YPM C20 H19 SING N N 56 YPM C21 H20 SING N N 57 YPM C21 H21 SING N N 58 YPM C23 H22 SING N N 59 YPM C23 H23 SING N N 60 YPM C24 H24 SING N N 61 YPM C25 H25 SING N N 62 YPM C25 H26 SING N N 63 YPM C27 H27 SING N N 64 YPM C28 H28 SING N N 65 YPM C29 H29 SING N N 66 YPM C30 H30 SING N N 67 YPM C31 H31 SING N N 68 YPM C32 H32 SING N N 69 YPM C32 H33 SING N N 70 YPM N03 H34 SING N N 71 YPM N08 H35 SING N N 72 YPM N08 H36 SING N N 73 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YPM SMILES ACDLabs 12.01 "O=C(NC1CCC(N)CC1)C12CC3CC(CC(C3)(C1)c1ccccc1)(C2)c1ccccc1" YPM InChI InChI 1.03 "InChI=1S/C29H36N2O/c30-24-11-13-25(14-12-24)31-26(32)29-17-21-15-27(19-29,22-7-3-1-4-8-22)18-28(16-21,20-29)23-9-5-2-6-10-23/h1-10,21,24-25H,11-20,30H2,(H,31,32)/t21-,24-,25-,27-,28+,29-" YPM InChIKey InChI 1.03 NVUHXOGQIOZZGY-AVGVDBRCSA-N YPM SMILES_CANONICAL CACTVS 3.385 "N[C@H]1CC[C@@H](CC1)NC(=O)C23CC4C[C@](C2)(C[C@@](C4)(C3)c5ccccc5)c6ccccc6" YPM SMILES CACTVS 3.385 "N[CH]1CC[CH](CC1)NC(=O)C23CC4C[C](C2)(C[C](C4)(C3)c5ccccc5)c6ccccc6" YPM SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)[C@]23CC4C[C@](C2)(CC(C4)(C3)C(=O)NC5CCC(CC5)N)c6ccccc6" YPM SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)C23CC4CC(C2)(CC(C4)(C3)C(=O)NC5CCC(CC5)N)c6ccccc6" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YPM "SYSTEMATIC NAME" ACDLabs 12.01 "(1s,3R,5S,7s)-N-[(1r,4r)-4-aminocyclohexyl]-3,5-diphenyladamantane-1-carboxamide" YPM "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(3~{S},5~{R})-~{N}-(4-azanylcyclohexyl)-3,5-diphenyl-adamantane-1-carboxamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YPM "Create component" 2021-03-19 RCSB YPM "Initial release" 2021-11-24 RCSB ##