data_YPS # _chem_comp.id YPS _chem_comp.name "(1R,3S,5R,7R)-N-[(1r,4R)-4-aminocyclohexyl]-3-(ethoxymethyl)-5-phenyladamantane-1-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H38 N2 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-03-19 _chem_comp.pdbx_modified_date 2021-11-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 410.592 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YPS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7M2D _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YPS C25 C1 C 0 1 N N N -44.128 13.790 -7.308 -0.133 0.579 1.710 C25 YPS 1 YPS C24 C2 C 0 1 N N R -44.596 12.360 -6.981 -1.573 0.412 2.200 C24 YPS 2 YPS C23 C3 C 0 1 N N N -45.435 12.369 -5.693 -2.461 1.470 1.542 C23 YPS 3 YPS C18 C4 C 0 1 Y N N -49.118 11.247 -11.689 -3.449 -5.047 -0.733 C18 YPS 4 YPS C19 C5 C 0 1 Y N N -47.902 11.852 -11.934 -4.101 -3.924 -1.208 C19 YPS 5 YPS C17 C6 C 0 1 Y N N -49.548 11.106 -10.377 -2.343 -4.909 0.085 C17 YPS 6 YPS C16 C7 C 0 1 Y N N -48.773 11.573 -9.332 -1.885 -3.648 0.421 C16 YPS 7 YPS C15 C8 C 0 1 Y N N -47.542 12.192 -9.560 -2.534 -2.526 -0.059 C15 YPS 8 YPS C11 C9 C 0 1 N N R -45.357 14.683 -7.511 -0.088 0.409 0.190 C11 YPS 9 YPS C12 C10 C 0 1 N N N -46.212 14.132 -8.673 -0.595 -0.985 -0.182 C12 YPS 10 YPS C10 C11 C 0 1 N N N -42.196 18.199 -8.032 4.411 -1.429 -0.193 C10 YPS 11 YPS C02 C12 C 0 1 N N N -45.055 16.141 -7.844 1.330 0.574 -0.292 C02 YPS 12 YPS C04 C13 C 0 1 N N N -43.647 18.123 -7.535 3.674 -0.094 -0.312 C04 YPS 13 YPS C05 C14 C 0 1 N N N -43.842 18.998 -6.285 4.384 0.959 0.542 C05 YPS 14 YPS C06 C15 C 0 1 N N N -43.406 20.444 -6.551 5.823 1.126 0.052 C06 YPS 15 YPS C07 C16 C 0 1 N N N -41.938 20.510 -7.006 6.561 -0.209 0.171 C07 YPS 16 YPS C09 C17 C 0 1 N N N -41.741 19.652 -8.268 5.851 -1.262 -0.682 C09 YPS 17 YPS C13 C18 C 0 1 N N R -46.693 12.693 -8.380 -2.035 -1.152 0.308 C13 YPS 18 YPS C14 C19 C 0 1 N N N -45.443 11.815 -8.148 -2.079 -0.983 1.827 C14 YPS 19 YPS C20 C20 C 0 1 Y N N -47.127 12.316 -10.881 -3.647 -2.664 -0.867 C20 YPS 20 YPS C21 C21 C 0 1 N N N -47.514 12.706 -7.066 -2.923 -0.095 -0.350 C21 YPS 21 YPS C22 C22 C 0 1 N N S -46.673 13.255 -5.895 -2.416 1.300 0.022 C22 YPS 22 YPS C26 C23 C 0 1 N N N -47.505 13.282 -4.615 -3.305 2.358 -0.636 C26 YPS 23 YPS C28 C24 C 0 1 N N N -48.831 11.822 -3.197 -3.596 4.727 -0.854 C28 YPS 24 YPS C29 C25 C 0 1 N N N -49.194 10.345 -3.090 -3.002 6.068 -0.417 C29 YPS 25 YPS C30 C26 C 0 1 N N N -46.211 14.682 -6.224 -0.976 1.467 -0.468 C30 YPS 26 YPS N03 N1 N 0 1 N N N -43.990 16.719 -7.259 2.295 -0.254 0.157 N03 YPS 27 YPS N08 N2 N 0 1 N N N -41.594 21.907 -7.329 7.943 -0.049 -0.299 N08 YPS 28 YPS O01 O1 O 0 1 N N N -45.775 16.751 -8.629 1.604 1.451 -1.084 O01 YPS 29 YPS O27 O2 O 0 1 N N N -48.003 11.959 -4.364 -2.831 3.661 -0.288 O27 YPS 30 YPS H1 H1 H 0 1 N N N -43.524 13.779 -8.227 0.228 1.573 1.975 H1 YPS 31 YPS H2 H2 H 0 1 N N N -43.523 14.179 -6.476 0.500 -0.174 2.179 H2 YPS 32 YPS H3 H3 H 0 1 N N N -43.717 11.714 -6.838 -1.605 0.533 3.283 H3 YPS 33 YPS H4 H4 H 0 1 N N N -45.753 11.343 -5.455 -3.487 1.351 1.891 H4 YPS 34 YPS H5 H5 H 0 1 N N N -44.831 12.767 -4.864 -2.100 2.464 1.807 H5 YPS 35 YPS H6 H6 H 0 1 N N N -49.726 10.888 -12.506 -3.807 -6.031 -0.995 H6 YPS 36 YPS H7 H7 H 0 1 N N N -47.552 11.965 -12.950 -4.966 -4.032 -1.847 H7 YPS 37 YPS H8 H8 H 0 1 N N N -50.494 10.628 -10.171 -1.838 -5.785 0.462 H8 YPS 38 YPS H9 H9 H 0 1 N N N -49.127 11.457 -8.318 -1.022 -3.540 1.061 H9 YPS 39 YPS H10 H10 H 0 1 N N N -45.608 14.128 -9.592 -0.563 -1.106 -1.265 H10 YPS 40 YPS H11 H11 H 0 1 N N N -47.089 14.782 -8.813 0.038 -1.739 0.287 H11 YPS 41 YPS H12 H12 H 0 1 N N N -42.115 17.644 -8.978 4.416 -1.749 0.849 H12 YPS 42 YPS H13 H13 H 0 1 N N N -41.539 17.739 -7.280 3.905 -2.179 -0.801 H13 YPS 43 YPS H14 H14 H 0 1 N N N -44.305 18.505 -8.330 3.668 0.227 -1.354 H14 YPS 44 YPS H15 H15 H 0 1 N N N -44.905 18.989 -6.002 3.858 1.910 0.457 H15 YPS 45 YPS H16 H16 H 0 1 N N N -43.240 18.587 -5.461 4.389 0.639 1.583 H16 YPS 46 YPS H17 H17 H 0 1 N N N -43.521 21.029 -5.627 5.818 1.446 -0.990 H17 YPS 47 YPS H18 H18 H 0 1 N N N -44.045 20.872 -7.338 6.329 1.876 0.660 H18 YPS 48 YPS H19 H19 H 0 1 N N N -41.288 20.133 -6.202 6.566 -0.530 1.213 H19 YPS 49 YPS H20 H20 H 0 1 N N N -40.675 19.654 -8.540 6.376 -2.213 -0.597 H20 YPS 50 YPS H21 H21 H 0 1 N N N -42.331 20.083 -9.090 5.845 -0.942 -1.724 H21 YPS 51 YPS H22 H22 H 0 1 N N N -45.762 10.789 -7.913 -1.447 -1.736 2.296 H22 YPS 52 YPS H23 H23 H 0 1 N N N -44.833 11.808 -9.063 -3.105 -1.102 2.176 H23 YPS 53 YPS H24 H24 H 0 1 N N N -46.178 12.785 -11.093 -4.156 -1.788 -1.239 H24 YPS 54 YPS H25 H25 H 0 1 N N N -48.401 13.343 -7.202 -2.891 -0.216 -1.433 H25 YPS 55 YPS H26 H26 H 0 1 N N N -47.832 11.680 -6.830 -3.949 -0.214 -0.002 H26 YPS 56 YPS H27 H27 H 0 1 N N N -46.878 13.608 -3.772 -3.273 2.237 -1.719 H27 YPS 57 YPS H28 H28 H 0 1 N N N -48.348 13.978 -4.736 -4.330 2.239 -0.287 H28 YPS 58 YPS H29 H29 H 0 1 N N N -48.280 12.143 -2.301 -4.628 4.657 -0.510 H29 YPS 59 YPS H30 H30 H 0 1 N N N -49.742 12.430 -3.305 -3.570 4.655 -1.941 H30 YPS 60 YPS H31 H31 H 0 1 N N N -49.831 10.186 -2.207 -3.028 6.140 0.670 H31 YPS 61 YPS H32 H32 H 0 1 N N N -49.737 10.035 -3.995 -1.970 6.138 -0.762 H32 YPS 62 YPS H33 H33 H 0 1 N N N -48.275 9.748 -2.991 -3.585 6.881 -0.849 H33 YPS 63 YPS H34 H34 H 0 1 N N N -45.610 15.071 -5.389 -0.615 2.461 -0.202 H34 YPS 64 YPS H35 H35 H 0 1 N N N -47.092 15.324 -6.372 -0.945 1.346 -1.550 H35 YPS 65 YPS H36 H36 H 0 1 N N N -43.424 16.188 -6.629 2.076 -0.955 0.790 H36 YPS 66 YPS H37 H37 H 0 1 N N N -41.717 22.477 -6.517 8.452 -0.918 -0.230 H37 YPS 67 YPS H38 H38 H 0 1 N N N -40.641 21.955 -7.628 7.965 0.309 -1.242 H38 YPS 68 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YPS C19 C18 DOUB Y N 1 YPS C19 C20 SING Y N 2 YPS C18 C17 SING Y N 3 YPS C20 C15 DOUB Y N 4 YPS C17 C16 DOUB Y N 5 YPS C15 C16 SING Y N 6 YPS C15 C13 SING N N 7 YPS C12 C13 SING N N 8 YPS C12 C11 SING N N 9 YPS O01 C02 DOUB N N 10 YPS C13 C14 SING N N 11 YPS C13 C21 SING N N 12 YPS C09 C10 SING N N 13 YPS C09 C07 SING N N 14 YPS C14 C24 SING N N 15 YPS C10 C04 SING N N 16 YPS C02 C11 SING N N 17 YPS C02 N03 SING N N 18 YPS C04 N03 SING N N 19 YPS C04 C05 SING N N 20 YPS C11 C25 SING N N 21 YPS C11 C30 SING N N 22 YPS N08 C07 SING N N 23 YPS C25 C24 SING N N 24 YPS C21 C22 SING N N 25 YPS C07 C06 SING N N 26 YPS C24 C23 SING N N 27 YPS C06 C05 SING N N 28 YPS C30 C22 SING N N 29 YPS C22 C23 SING N N 30 YPS C22 C26 SING N N 31 YPS C26 O27 SING N N 32 YPS O27 C28 SING N N 33 YPS C28 C29 SING N N 34 YPS C25 H1 SING N N 35 YPS C25 H2 SING N N 36 YPS C24 H3 SING N N 37 YPS C23 H4 SING N N 38 YPS C23 H5 SING N N 39 YPS C18 H6 SING N N 40 YPS C19 H7 SING N N 41 YPS C17 H8 SING N N 42 YPS C16 H9 SING N N 43 YPS C12 H10 SING N N 44 YPS C12 H11 SING N N 45 YPS C10 H12 SING N N 46 YPS C10 H13 SING N N 47 YPS C04 H14 SING N N 48 YPS C05 H15 SING N N 49 YPS C05 H16 SING N N 50 YPS C06 H17 SING N N 51 YPS C06 H18 SING N N 52 YPS C07 H19 SING N N 53 YPS C09 H20 SING N N 54 YPS C09 H21 SING N N 55 YPS C14 H22 SING N N 56 YPS C14 H23 SING N N 57 YPS C20 H24 SING N N 58 YPS C21 H25 SING N N 59 YPS C21 H26 SING N N 60 YPS C26 H27 SING N N 61 YPS C26 H28 SING N N 62 YPS C28 H29 SING N N 63 YPS C28 H30 SING N N 64 YPS C29 H31 SING N N 65 YPS C29 H32 SING N N 66 YPS C29 H33 SING N N 67 YPS C30 H34 SING N N 68 YPS C30 H35 SING N N 69 YPS N03 H36 SING N N 70 YPS N08 H37 SING N N 71 YPS N08 H38 SING N N 72 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YPS SMILES ACDLabs 12.01 "O=C(NC1CCC(N)CC1)C12CC3CC(CC(COCC)(C3)C1)(C2)c1ccccc1" YPS InChI InChI 1.03 "InChI=1S/C26H38N2O2/c1-2-30-18-24-12-19-13-25(15-24,20-6-4-3-5-7-20)17-26(14-19,16-24)23(29)28-22-10-8-21(27)9-11-22/h3-7,19,21-22H,2,8-18,27H2,1H3,(H,28,29)/t19-,21-,22-,24-,25+,26-/m0/s1" YPS InChIKey InChI 1.03 QUVAMRWCRBWKIJ-OKWRYAMFSA-N YPS SMILES_CANONICAL CACTVS 3.385 "CCOC[C@]12C[C@@H]3C[C@](C1)(C[C@@](C3)(C2)c4ccccc4)C(=O)N[C@H]5CC[C@H](N)CC5" YPS SMILES CACTVS 3.385 "CCOC[C]12C[CH]3C[C](C1)(C[C](C3)(C2)c4ccccc4)C(=O)N[CH]5CC[CH](N)CC5" YPS SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCOC[C@@]12C[C@H]3C[C@@](C1)(C[C@](C3)(C2)C(=O)NC4CCC(CC4)N)c5ccccc5" YPS SMILES "OpenEye OEToolkits" 2.0.7 "CCOCC12CC3CC(C1)(CC(C3)(C2)C(=O)NC4CCC(CC4)N)c5ccccc5" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YPS "SYSTEMATIC NAME" ACDLabs 12.01 "(1R,3S,5R,7R)-N-[(1r,4R)-4-aminocyclohexyl]-3-(ethoxymethyl)-5-phenyladamantane-1-carboxamide" YPS "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(1~{R},3~{S},5~{R},7~{R})-~{N}-(4-azanylcyclohexyl)-3-(ethoxymethyl)-5-phenyl-adamantane-1-carboxamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YPS "Create component" 2021-03-19 RCSB YPS "Initial release" 2021-11-24 RCSB ##