data_YQ2 # _chem_comp.id YQ2 _chem_comp.name "2-[[(1~{R})-1-(7-methyl-4-oxidanylidene-2-piperidin-1-yl-3~{H}-pyrido[1,2-a]pyrimidin-9-yl)ethyl]amino]benzoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H27 N4 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2023-12-08 _chem_comp.pdbx_modified_date 2024-03-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 407.485 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YQ2 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8V8V _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YQ2 C13 C1 C 0 1 N N N N N N 10.876 -19.244 -17.119 3.536 3.430 -0.637 C13 YQ2 1 YQ2 C15 C2 C 0 1 N N N N N N 11.576 -17.079 -16.176 5.742 2.253 -0.618 C15 YQ2 2 YQ2 C17 C3 C 0 1 Y N N N N N 7.336 -15.966 -23.185 -3.111 1.118 0.083 C17 YQ2 3 YQ2 C20 C4 C 0 1 Y N N N N N 9.034 -14.022 -24.261 -4.623 3.325 0.832 C20 YQ2 4 YQ2 C22 C5 C 0 1 Y N N N N N 7.591 -14.781 -22.510 -2.494 2.340 0.320 C22 YQ2 5 YQ2 C11 C6 C 0 1 N N N N N N 6.178 -18.831 -21.130 -0.711 0.618 -2.000 C11 YQ2 6 YQ2 C12 C7 C 0 1 N N N N N N 9.407 -18.786 -17.070 2.991 2.456 0.413 C12 YQ2 7 YQ2 C18 C8 C 0 1 Y N N N N N 7.938 -16.177 -24.441 -4.504 1.005 0.218 C18 YQ2 8 YQ2 C19 C9 C 0 1 Y N N N N N 8.785 -15.188 -24.950 -5.253 2.123 0.596 C19 YQ2 9 YQ2 C23 C10 C 0 1 N N N N N N 7.762 -17.376 -25.245 -5.172 -0.283 -0.037 C23 YQ2 10 YQ2 C1 C11 C 0 1 Y N N N N N 4.258 -14.826 -19.630 -0.259 -3.541 -0.244 C1 YQ2 11 YQ2 C10 C12 C 0 1 N N R N N N 6.587 -17.362 -21.236 -0.921 0.166 -0.553 C10 YQ2 12 YQ2 C14 C13 C 0 1 N N N N N N 11.766 -18.586 -16.062 5.044 3.602 -0.434 C14 YQ2 13 YQ2 C16 C14 C 0 1 N N N N N N 10.117 -16.737 -15.962 5.222 1.266 0.433 C16 YQ2 14 YQ2 C2 C15 C 0 1 Y N N N N N 4.813 -15.709 -20.551 -0.929 -2.338 -0.455 C2 YQ2 15 YQ2 C21 C16 C 0 1 Y N N N N N 8.429 -13.828 -23.036 -3.249 3.434 0.693 C21 YQ2 16 YQ2 C3 C17 C 0 1 Y N N N N N 5.949 -16.411 -20.229 -0.229 -1.155 -0.334 C3 YQ2 17 YQ2 C4 C18 C 0 1 Y N N N N N 6.537 -16.197 -18.962 1.130 -1.194 -0.004 C4 YQ2 18 YQ2 C5 C19 C 0 1 Y N N N N N 4.832 -14.643 -18.415 1.064 -3.525 0.087 C5 YQ2 19 YQ2 C6 C20 C 0 1 N N N N N N 8.205 -16.632 -17.332 3.121 0.009 0.188 C6 YQ2 20 YQ2 C7 C21 C 0 1 N N N N N N 7.660 -15.779 -16.452 3.923 -1.269 0.115 C7 YQ2 21 YQ2 C8 C22 C 0 1 N N N N N N 6.520 -15.096 -16.817 3.038 -2.398 0.598 C8 YQ2 22 YQ2 C9 C23 C 0 1 N N N N N N 3.007 -14.080 -20.002 -0.993 -4.850 -0.374 C9 YQ2 23 YQ2 N1 N1 N 1 1 Y N N N N N 5.970 -15.327 -18.087 1.727 -2.377 0.218 N1 YQ2 24 YQ2 N2 N2 N 0 1 N N N N N N 7.654 -16.830 -18.549 1.822 -0.030 0.107 N2 YQ2 25 YQ2 N3 N3 N 0 1 N N N N N N 9.320 -17.323 -17.049 3.757 1.204 0.339 N3 YQ2 26 YQ2 N4 N4 N 0 1 N N N N N N 6.475 -16.922 -22.615 -2.354 0.016 -0.292 N4 YQ2 27 YQ2 O1 O1 O 0 1 N N N N N N 5.918 -14.296 -16.110 3.477 -3.288 1.296 O1 YQ2 28 YQ2 O2 O2 O 0 1 N N N N N N 7.164 -18.394 -24.831 -6.517 -0.360 -0.021 O2 YQ2 29 YQ2 O3 O3 O 0 1 N N N N N N 8.242 -17.429 -26.403 -4.509 -1.277 -0.261 O3 YQ2 30 YQ2 H1 H1 H 0 1 N N N N N N 10.905 -20.333 -16.967 3.347 3.033 -1.634 H1 YQ2 31 YQ2 H2 H2 H 0 1 N N N N N N 11.281 -19.002 -18.113 3.042 4.395 -0.529 H2 YQ2 32 YQ2 H3 H3 H 0 1 N N N N N N 12.187 -16.574 -15.413 5.532 1.867 -1.615 H3 YQ2 33 YQ2 H4 H4 H 0 1 N N N N N N 11.888 -16.745 -17.176 6.818 2.380 -0.496 H4 YQ2 34 YQ2 H5 H5 H 0 1 N N N N N N 9.692 -13.271 -24.673 -5.204 4.187 1.124 H5 YQ2 35 YQ2 H6 H6 H 0 1 N N N N N N 7.122 -14.605 -21.553 -1.424 2.434 0.213 H6 YQ2 36 YQ2 H7 H7 H 0 1 N N N N N N 6.264 -19.162 -20.084 0.356 0.729 -2.194 H7 YQ2 37 YQ2 H8 H8 H 0 1 N N N N N N 5.137 -18.947 -21.467 -1.128 -0.128 -2.677 H8 YQ2 38 YQ2 H9 H9 H 0 1 N N N N N N 6.838 -19.442 -21.763 -1.211 1.573 -2.159 H9 YQ2 39 YQ2 H10 H10 H 0 1 N N N N N N 8.881 -19.166 -17.958 3.099 2.893 1.406 H10 YQ2 40 YQ2 H11 H11 H 0 1 N N N N N N 8.933 -19.189 -16.163 1.940 2.254 0.212 H11 YQ2 41 YQ2 H12 H12 H 0 1 N N N N N N 9.257 -15.343 -25.909 -6.325 2.044 0.702 H12 YQ2 42 YQ2 H13 H13 H 0 1 N N N N N N 7.662 -17.347 -21.002 -0.504 0.911 0.124 H13 YQ2 43 YQ2 H14 H14 H 0 1 N N N N N N 11.472 -18.927 -15.058 5.430 4.313 -1.164 H14 YQ2 44 YQ2 H15 H15 H 0 1 N N N N N N 12.819 -18.846 -16.243 5.234 3.975 0.572 H15 YQ2 45 YQ2 H16 H16 H 0 1 N N N N N N 9.991 -15.644 -15.961 5.642 0.278 0.245 H16 YQ2 46 YQ2 H17 H17 H 0 1 N N N N N N 9.781 -17.145 -14.998 5.513 1.604 1.427 H17 YQ2 47 YQ2 H18 H18 H 0 1 N N N N N N 4.351 -15.842 -21.518 -1.979 -2.331 -0.711 H18 YQ2 48 YQ2 H19 H19 H 0 1 N N N N N N 8.616 -12.918 -22.485 -2.764 4.381 0.880 H19 YQ2 49 YQ2 H20 H20 H 0 1 N N N N N N 4.391 -13.957 -17.707 1.583 -4.459 0.246 H20 YQ2 50 YQ2 H21 H21 H 0 1 N N N N N N 7.417 -16.357 -15.548 4.228 -1.454 -0.915 H21 YQ2 51 YQ2 H22 H22 H 0 1 N N N N N N 8.426 -15.027 -16.212 4.803 -1.189 0.752 H22 YQ2 52 YQ2 H23 H23 H 0 1 N N N N N N 2.126 -14.668 -19.703 -1.420 -5.125 0.590 H23 YQ2 53 YQ2 H24 H24 H 0 1 N N N N N N 2.992 -13.109 -19.485 -1.792 -4.748 -1.109 H24 YQ2 54 YQ2 H25 H25 H 0 1 N N N N N N 2.987 -13.917 -21.090 -0.299 -5.625 -0.698 H25 YQ2 55 YQ2 H26 H26 H 0 1 N N N N N N 5.550 -16.554 -22.713 -2.775 -0.854 -0.380 H26 YQ2 56 YQ2 H27 H27 H 0 1 N N N N N N 7.179 -19.066 -25.503 -6.909 -1.226 -0.194 H27 YQ2 57 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YQ2 O3 C23 DOUB N N 1 YQ2 C23 O2 SING N N 2 YQ2 C23 C18 SING N N 3 YQ2 C19 C18 DOUB Y N 4 YQ2 C19 C20 SING Y N 5 YQ2 C18 C17 SING Y N 6 YQ2 C20 C21 DOUB Y N 7 YQ2 C17 N4 SING N N 8 YQ2 C17 C22 DOUB Y N 9 YQ2 C21 C22 SING Y N 10 YQ2 N4 C10 SING N N 11 YQ2 C10 C11 SING N N 12 YQ2 C10 C3 SING N N 13 YQ2 C2 C3 DOUB Y N 14 YQ2 C2 C1 SING Y N 15 YQ2 C3 C4 SING Y N 16 YQ2 C9 C1 SING N N 17 YQ2 C1 C5 DOUB Y N 18 YQ2 C4 N2 SING N N 19 YQ2 C4 N1 DOUB Y N 20 YQ2 N2 C6 DOUB N N 21 YQ2 C5 N1 SING Y N 22 YQ2 N1 C8 SING N N 23 YQ2 C6 N3 SING N N 24 YQ2 C6 C7 SING N N 25 YQ2 C13 C12 SING N N 26 YQ2 C13 C14 SING N N 27 YQ2 C12 N3 SING N N 28 YQ2 N3 C16 SING N N 29 YQ2 C8 C7 SING N N 30 YQ2 C8 O1 DOUB N N 31 YQ2 C15 C14 SING N N 32 YQ2 C15 C16 SING N N 33 YQ2 C13 H1 SING N N 34 YQ2 C13 H2 SING N N 35 YQ2 C15 H3 SING N N 36 YQ2 C15 H4 SING N N 37 YQ2 C20 H5 SING N N 38 YQ2 C22 H6 SING N N 39 YQ2 C11 H7 SING N N 40 YQ2 C11 H8 SING N N 41 YQ2 C11 H9 SING N N 42 YQ2 C12 H10 SING N N 43 YQ2 C12 H11 SING N N 44 YQ2 C19 H12 SING N N 45 YQ2 C10 H13 SING N N 46 YQ2 C14 H14 SING N N 47 YQ2 C14 H15 SING N N 48 YQ2 C16 H16 SING N N 49 YQ2 C16 H17 SING N N 50 YQ2 C2 H18 SING N N 51 YQ2 C21 H19 SING N N 52 YQ2 C5 H20 SING N N 53 YQ2 C7 H21 SING N N 54 YQ2 C7 H22 SING N N 55 YQ2 C9 H23 SING N N 56 YQ2 C9 H24 SING N N 57 YQ2 C9 H25 SING N N 58 YQ2 N4 H26 SING N N 59 YQ2 O2 H27 SING N N 60 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YQ2 SMILES ACDLabs 12.01 "O=C(O)c1ccccc1NC(C)c1cc(C)c[n+]2c1N=C(CC2=O)N1CCCCC1" YQ2 InChI InChI 1.06 "InChI=1S/C23H26N4O3/c1-15-12-18(16(2)24-19-9-5-4-8-17(19)23(29)30)22-25-20(13-21(28)27(22)14-15)26-10-6-3-7-11-26/h4-5,8-9,12,14,16,24H,3,6-7,10-11,13H2,1-2H3/p+1/t16-/m1/s1" YQ2 InChIKey InChI 1.06 QCAAPBLGXMBOBO-MRXNPFEDSA-O YQ2 SMILES_CANONICAL CACTVS 3.385 "C[C@@H](Nc1ccccc1C(O)=O)c2cc(C)c[n+]3C(=O)CC(=Nc23)N4CCCCC4" YQ2 SMILES CACTVS 3.385 "C[CH](Nc1ccccc1C(O)=O)c2cc(C)c[n+]3C(=O)CC(=Nc23)N4CCCCC4" YQ2 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc(c2[n+](c1)C(=O)CC(=N2)N3CCCCC3)[C@@H](C)Nc4ccccc4C(=O)O" YQ2 SMILES "OpenEye OEToolkits" 2.0.7 "Cc1cc(c2[n+](c1)C(=O)CC(=N2)N3CCCCC3)C(C)Nc4ccccc4C(=O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YQ2 "SYSTEMATIC NAME" ACDLabs 12.01 "9-[(1R)-1-(2-carboxyanilino)ethyl]-7-methyl-4-oxo-2-(piperidin-1-yl)-3,4-dihydropyrido[1,2-a]pyrimidin-5-ium" YQ2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-[[(1~{R})-1-(7-methyl-4-oxidanylidene-2-piperidin-1-yl-3~{H}-pyrido[1,2-a]pyrimidin-5-ium-9-yl)ethyl]amino]benzoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YQ2 "Create component" 2023-12-08 RCSB YQ2 "Initial release" 2024-03-20 RCSB #