data_YQ3 # _chem_comp.id YQ3 _chem_comp.name "(5M)-5-(2-chloro-4-methylphenyl)-1-[(pyridin-4-yl)methyl]-1H-benzimidazole-7-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H16 Cl N3 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-02-15 _chem_comp.pdbx_modified_date 2024-02-16 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 377.824 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YQ3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7FUB _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YQ3 C10 C1 C 0 1 Y N N N N N 10.728 -16.111 -16.102 1.173 1.021 0.524 C10 YQ3 1 YQ3 C11 C2 C 0 1 Y N N N N N 11.498 -15.150 -16.753 -0.220 1.005 0.451 C11 YQ3 2 YQ3 C13 C3 C 0 1 Y N N N N N 13.063 -13.949 -17.572 -2.352 1.423 0.466 C13 YQ3 3 YQ3 C15 C4 C 0 1 N N N N N N 11.825 -12.058 -18.688 -3.321 -0.802 -0.221 C15 YQ3 4 YQ3 C16 C5 C 0 1 Y N N N N N 11.915 -12.099 -20.191 -4.641 -0.103 -0.020 C16 YQ3 5 YQ3 C17 C6 C 0 1 Y N N N N N 12.388 -13.201 -20.873 -5.193 0.675 -1.027 C17 YQ3 6 YQ3 C18 C7 C 0 1 Y N N N N N 12.447 -13.164 -22.251 -6.405 1.301 -0.806 C18 YQ3 7 YQ3 C20 C8 C 0 1 Y N N N N N 11.631 -11.043 -22.308 -6.542 0.430 1.322 C20 YQ3 8 YQ3 C21 C9 C 0 1 Y N N N N N 11.540 -10.994 -20.933 -5.334 -0.226 1.174 C21 YQ3 9 YQ3 C22 C10 C 0 1 Y N N N N N 10.879 -14.080 -17.415 -0.884 -0.176 0.080 C22 YQ3 10 YQ3 C23 C11 C 0 1 Y N N N N N 9.474 -13.996 -17.416 -0.146 -1.333 -0.215 C23 YQ3 11 YQ3 C24 C12 C 0 1 N N N N N N 8.663 -12.936 -18.074 -0.838 -2.574 -0.606 C24 YQ3 12 YQ3 C27 C13 C 0 1 Y N N N N N 8.724 -14.977 -16.764 1.244 -1.301 -0.138 C27 YQ3 13 YQ3 C1 C14 C 0 1 N N N N N N 6.179 -19.888 -13.096 7.650 -0.031 0.535 C1 YQ3 14 YQ3 C2 C15 C 0 1 Y N N N N N 7.003 -18.902 -13.887 6.145 -0.055 0.453 C2 YQ3 15 YQ3 C3 C16 C 0 1 Y N N N N N 7.549 -19.254 -15.110 5.478 0.931 -0.250 C3 YQ3 16 YQ3 C4 C17 C 0 1 Y N N N N N 8.296 -18.348 -15.834 4.099 0.914 -0.328 C4 YQ3 17 YQ3 C6 C18 C 0 1 Y N N N N N 8.526 -17.056 -15.380 3.381 -0.101 0.304 C6 YQ3 18 YQ3 C7 C19 C 0 1 Y N N N N N 7.984 -16.709 -14.142 4.059 -1.091 1.010 C7 YQ3 19 YQ3 C8 C20 C 0 1 Y N N N N N 7.226 -17.617 -13.421 5.438 -1.067 1.077 C8 YQ3 20 YQ3 C9 C21 C 0 1 Y N N N N N 9.336 -16.040 -16.103 1.899 -0.125 0.224 C9 YQ3 21 YQ3 N12 N1 N 0 1 Y N N N N N 12.880 -15.039 -16.862 -1.178 1.943 0.673 N12 YQ3 22 YQ3 N14 N2 N 0 1 Y N N N N N 11.910 -13.333 -17.968 -2.227 0.118 0.098 N14 YQ3 23 YQ3 N19 N3 N 0 1 Y N N N N N 12.071 -12.109 -22.981 -7.034 1.166 0.345 N19 YQ3 24 YQ3 O25 O1 O 0 1 N N N N N N 7.700 -13.208 -18.797 -2.040 -2.570 -0.784 O25 YQ3 25 YQ3 O26 O2 O 0 1 N N N N N N 9.037 -11.720 -17.805 -0.137 -3.714 -0.767 O26 YQ3 26 YQ3 CL5 CL1 CL 0 0 N N N N N N 8.949 -18.858 -17.352 3.261 2.153 -1.210 CL5 YQ3 27 YQ3 H34 H1 H 0 1 N N N N N N 11.218 -16.925 -15.588 1.688 1.927 0.809 H34 YQ3 28 YQ3 H35 H2 H 0 1 N N N N N N 14.044 -13.571 -17.822 -3.290 1.949 0.571 H35 YQ3 29 YQ3 H37 H3 H 0 1 N N N N N N 10.861 -11.597 -18.428 -3.267 -1.672 0.435 H37 YQ3 30 YQ3 H36 H4 H 0 1 N N N N N N 12.645 -11.420 -18.326 -3.235 -1.124 -1.259 H36 YQ3 31 YQ3 H38 H5 H 0 1 N N N N N N 12.708 -14.081 -20.335 -4.681 0.790 -1.971 H38 YQ3 32 YQ3 H39 H6 H 0 1 N N N N N N 12.818 -14.036 -22.769 -6.841 1.908 -1.585 H39 YQ3 33 YQ3 H40 H7 H 0 1 N N N N N N 11.330 -10.172 -22.871 -7.089 0.339 2.249 H40 YQ3 34 YQ3 H41 H8 H 0 1 N N N N N N 11.180 -10.103 -20.441 -4.937 -0.827 1.979 H41 YQ3 35 YQ3 H43 H9 H 0 1 N N N N N N 7.646 -14.910 -16.772 1.817 -2.189 -0.364 H43 YQ3 36 YQ3 H30 H10 H 0 1 N N N N N N 6.835 -20.457 -12.421 7.957 0.545 1.407 H30 YQ3 37 YQ3 H28 H11 H 0 1 N N N N N N 5.426 -19.346 -12.505 8.025 -1.051 0.622 H28 YQ3 38 YQ3 H29 H12 H 0 1 N N N N N N 5.674 -20.580 -13.786 8.055 0.430 -0.366 H29 YQ3 39 YQ3 H31 H13 H 0 1 N N N N N N 7.388 -20.248 -15.501 6.036 1.716 -0.739 H31 YQ3 40 YQ3 H32 H14 H 0 1 N N N N N N 8.157 -15.721 -13.741 3.508 -1.879 1.502 H32 YQ3 41 YQ3 H33 H15 H 0 1 N N N N N N 6.800 -17.316 -12.475 5.964 -1.837 1.621 H33 YQ3 42 YQ3 H42 H16 H 0 1 N N N N N N 8.461 -11.106 -18.246 -0.635 -4.503 -1.023 H42 YQ3 43 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YQ3 C1 C2 SING N N 1 YQ3 C2 C3 DOUB Y N 2 YQ3 C2 C8 SING Y N 3 YQ3 C3 C4 SING Y N 4 YQ3 C4 CL5 SING N N 5 YQ3 C4 C6 DOUB Y N 6 YQ3 C6 C7 SING Y N 7 YQ3 C6 C9 SING N N 8 YQ3 C7 C8 DOUB Y N 9 YQ3 C9 C10 DOUB Y N 10 YQ3 C9 C27 SING Y N 11 YQ3 C10 C11 SING Y N 12 YQ3 C11 N12 SING Y N 13 YQ3 C11 C22 DOUB Y N 14 YQ3 N12 C13 DOUB Y N 15 YQ3 C13 N14 SING Y N 16 YQ3 N14 C15 SING N N 17 YQ3 N14 C22 SING Y N 18 YQ3 C15 C16 SING N N 19 YQ3 C16 C17 DOUB Y N 20 YQ3 C16 C21 SING Y N 21 YQ3 C17 C18 SING Y N 22 YQ3 C18 N19 DOUB Y N 23 YQ3 N19 C20 SING Y N 24 YQ3 C20 C21 DOUB Y N 25 YQ3 C22 C23 SING Y N 26 YQ3 C23 C24 SING N N 27 YQ3 C23 C27 DOUB Y N 28 YQ3 C24 O25 DOUB N N 29 YQ3 C24 O26 SING N N 30 YQ3 C10 H34 SING N N 31 YQ3 C13 H35 SING N N 32 YQ3 C15 H37 SING N N 33 YQ3 C15 H36 SING N N 34 YQ3 C17 H38 SING N N 35 YQ3 C18 H39 SING N N 36 YQ3 C20 H40 SING N N 37 YQ3 C21 H41 SING N N 38 YQ3 C27 H43 SING N N 39 YQ3 C1 H30 SING N N 40 YQ3 C1 H28 SING N N 41 YQ3 C1 H29 SING N N 42 YQ3 C3 H31 SING N N 43 YQ3 C7 H32 SING N N 44 YQ3 C8 H33 SING N N 45 YQ3 O26 H42 SING N N 46 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YQ3 SMILES ACDLabs 12.01 "Cc1ccc(c2cc3ncn(Cc4ccncc4)c3c(c2)C(=O)O)c(Cl)c1" YQ3 InChI InChI 1.06 "InChI=1S/C21H16ClN3O2/c1-13-2-3-16(18(22)8-13)15-9-17(21(26)27)20-19(10-15)24-12-25(20)11-14-4-6-23-7-5-14/h2-10,12H,11H2,1H3,(H,26,27)" YQ3 InChIKey InChI 1.06 BLIMBRVIWSATHU-UHFFFAOYSA-N YQ3 SMILES_CANONICAL CACTVS 3.385 "Cc1ccc(c(Cl)c1)c2cc3ncn(Cc4ccncc4)c3c(c2)C(O)=O" YQ3 SMILES CACTVS 3.385 "Cc1ccc(c(Cl)c1)c2cc3ncn(Cc4ccncc4)c3c(c2)C(O)=O" YQ3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1ccc(c(c1)Cl)c2cc(c3c(c2)ncn3Cc4ccncc4)C(=O)O" YQ3 SMILES "OpenEye OEToolkits" 2.0.7 "Cc1ccc(c(c1)Cl)c2cc(c3c(c2)ncn3Cc4ccncc4)C(=O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YQ3 "SYSTEMATIC NAME" ACDLabs 12.01 "(5M)-5-(2-chloro-4-methylphenyl)-1-[(pyridin-4-yl)methyl]-1H-benzimidazole-7-carboxylic acid" YQ3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "6-(2-chloranyl-4-methyl-phenyl)-3-(pyridin-4-ylmethyl)benzimidazole-4-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YQ3 "Create component" 2023-02-15 RCSB YQ3 "Initial release" 2024-02-21 RCSB #