data_YQ9 # _chem_comp.id YQ9 _chem_comp.name "[(3aR,3bS,6aR,6bS)-5-(1H-benzotriazole-5-carbonyl)octahydrocyclobuta[1,2-c:3,4-c']dipyrrol-2(1H)-yl][5-cyclopropyl-6-(2,2,2-trifluoroethoxy)pyridin-3-yl]methanone" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H25 F3 N6 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-19 _chem_comp.pdbx_modified_date 2024-12-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 526.510 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YQ9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7G5R _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YQ9 C10 C1 C 0 1 N N N N N N -9.849 12.693 49.945 3.555 -0.287 0.007 C10 YQ9 1 YQ9 C15 C2 C 0 1 N N N N N N -10.315 13.871 52.128 5.424 -1.272 1.346 C15 YQ9 2 YQ9 C16 C3 C 0 1 Y N N N N N -9.049 13.352 52.766 6.327 -0.165 0.970 C16 YQ9 3 YQ9 C18 C4 C 0 1 Y N N N N N -9.065 12.012 53.204 7.320 0.260 1.864 C18 YQ9 4 YQ9 C19 C5 C 0 1 Y N N N N N -7.994 11.424 53.809 8.160 1.281 1.530 C19 YQ9 5 YQ9 C20 C6 C 0 1 Y N N N N N -7.941 14.204 52.912 6.193 0.446 -0.270 C20 YQ9 6 YQ9 C21 C7 C 0 1 Y N N N N N -6.820 13.613 53.554 7.051 1.493 -0.619 C21 YQ9 7 YQ9 C22 C8 C 0 1 Y N N N N N -6.861 12.230 53.997 8.038 1.910 0.294 C22 YQ9 8 YQ9 C26 C9 C 0 1 N N N N N N -13.969 9.241 47.403 -1.922 -2.635 -0.965 C26 YQ9 9 YQ9 C27 C10 C 0 1 Y N N N N N -13.310 8.358 46.388 -3.003 -1.680 -0.649 C27 YQ9 10 YQ9 N1 N1 N 0 1 N N N N N N -13.241 9.872 48.427 -0.650 -2.202 -1.073 N1 YQ9 11 YQ9 C2 C11 C 0 1 N N N N N N -13.923 10.743 49.452 0.523 -3.060 -1.275 C2 YQ9 12 YQ9 C3 C12 C 0 1 N N S N N N -12.777 11.496 50.124 1.755 -2.225 -0.882 C3 YQ9 13 YQ9 C4 C13 C 0 1 N N R N N N -11.447 10.746 49.721 1.308 -0.765 -1.143 C4 YQ9 14 YQ9 C5 C14 C 0 1 N N N N N N -11.782 9.740 48.623 -0.223 -0.801 -1.005 C5 YQ9 15 YQ9 C6 C15 C 0 1 N N S N N N -12.267 12.767 49.367 1.809 -1.864 0.608 C6 YQ9 16 YQ9 C7 C16 C 0 1 N N R N N N -10.910 12.026 49.086 2.026 -0.396 0.166 C7 YQ9 17 YQ9 C8 C17 C 0 1 N N N N N N -11.912 13.995 50.206 3.126 -2.258 1.297 C8 YQ9 18 YQ9 N9 N2 N 0 1 N N N N N N -10.645 13.529 50.844 4.145 -1.272 0.920 N9 YQ9 19 YQ9 O17 O1 O 0 1 N N N N N N -11.104 14.583 52.778 5.834 -2.182 2.039 O17 YQ9 20 YQ9 N23 N3 N 0 1 Y N N N N N -5.633 11.993 54.565 8.712 2.937 -0.318 N23 YQ9 21 YQ9 N24 N4 N 0 1 Y N N N N N -4.888 13.173 54.469 8.116 3.118 -1.575 N24 YQ9 22 YQ9 N25 N5 N 0 1 Y N N N N N -5.544 14.116 53.889 7.165 2.265 -1.726 N25 YQ9 23 YQ9 O28 O2 O 0 1 N N N N N N -15.173 9.406 47.356 -2.180 -3.812 -1.129 O28 YQ9 24 YQ9 C29 C18 C 0 1 Y N N N N N -12.589 8.765 45.253 -2.749 -0.301 -0.625 C29 YQ9 25 YQ9 C30 C19 C 0 1 Y N N N N N -12.035 7.828 44.365 -3.792 0.552 -0.324 C30 YQ9 26 YQ9 C31 C20 C 0 1 Y N N N N N -13.462 6.975 46.622 -4.293 -2.136 -0.375 C31 YQ9 27 YQ9 N32 N6 N 0 1 Y N N N N N -12.942 6.046 45.806 -5.258 -1.286 -0.093 N32 YQ9 28 YQ9 C33 C21 C 0 1 Y N N N N N -12.243 6.482 44.710 -5.049 0.021 -0.056 C33 YQ9 29 YQ9 O34 O3 O 0 1 N N N N N N -11.708 5.560 43.875 -6.076 0.853 0.240 O34 YQ9 30 YQ9 C35 C22 C 0 1 N N N N N N -11.914 4.220 44.224 -7.344 0.250 0.506 C35 YQ9 31 YQ9 C36 C23 C 0 1 N N N N N N -11.029 3.504 43.153 -8.372 1.340 0.818 C36 YQ9 32 YQ9 F37 F1 F 0 1 N N N N N N -9.785 3.957 43.046 -8.486 2.201 -0.278 F37 YQ9 33 YQ9 F38 F2 F 0 1 N N N N N N -10.936 2.186 43.484 -9.613 0.750 1.079 F38 YQ9 34 YQ9 F39 F3 F 0 1 N N N N N N -11.450 3.673 41.879 -7.956 2.066 1.940 F39 YQ9 35 YQ9 C40 C24 C 0 1 N N N N N N -11.256 8.194 43.131 -3.570 2.042 -0.286 C40 YQ9 36 YQ9 C41 C25 C 0 1 N N N N N N -10.136 9.227 43.255 -3.086 2.718 -1.570 C41 YQ9 37 YQ9 C42 C26 C 0 1 N N N N N N -11.400 9.586 42.500 -2.128 2.545 -0.389 C42 YQ9 38 YQ9 H49 H1 H 0 1 N N N N N N -9.267 11.948 50.507 3.840 -0.512 -1.020 H49 YQ9 39 YQ9 H50 H2 H 0 1 N N N N N N -9.169 13.304 49.333 3.887 0.716 0.275 H50 YQ9 40 YQ9 H51 H3 H 0 1 N N N N N N -9.961 11.428 53.054 7.420 -0.224 2.825 H51 YQ9 41 YQ9 H52 H4 H 0 1 N N N N N N -8.017 10.392 54.127 8.921 1.602 2.226 H52 YQ9 42 YQ9 H53 H5 H 0 1 N N N N N N -7.942 15.226 52.564 5.431 0.115 -0.960 H53 YQ9 43 YQ9 H44 H6 H 0 1 N N N N N N -14.619 11.443 48.968 0.454 -3.943 -0.640 H44 YQ9 44 YQ9 H43 H7 H 0 1 N N N N N N -14.469 10.130 50.184 0.592 -3.357 -2.321 H43 YQ9 45 YQ9 H12 H8 H 0 1 N N N N N N -12.895 11.638 51.208 2.691 -2.539 -1.345 H12 YQ9 46 YQ9 H11 H9 H 0 1 N N N N N N -10.865 10.353 50.567 1.678 -0.297 -2.055 H11 YQ9 47 YQ9 H45 H10 H 0 1 N N N N N N -11.524 8.719 48.940 -0.679 -0.237 -1.818 H45 YQ9 48 YQ9 H46 H11 H 0 1 N N N N N N -11.242 9.983 47.696 -0.517 -0.372 -0.047 H46 YQ9 49 YQ9 H14 H12 H 0 1 N N N N N N -12.839 12.995 48.455 0.903 -2.069 1.178 H14 YQ9 50 YQ9 H13 H13 H 0 1 N N N N N N -10.657 11.942 48.019 1.563 0.386 0.768 H13 YQ9 51 YQ9 H48 H14 H 0 1 N N N N N N -11.748 14.883 49.578 2.992 -2.254 2.378 H48 YQ9 52 YQ9 H47 H15 H 0 1 N N N N N N -12.688 14.214 50.955 3.433 -3.250 0.966 H47 YQ9 53 YQ9 H54 H16 H 0 1 N N N N N N -5.327 11.133 54.973 9.456 3.441 0.047 H54 YQ9 54 YQ9 H55 H17 H 0 1 N N N N N N -12.458 9.819 45.059 -1.763 0.084 -0.837 H55 YQ9 55 YQ9 H56 H18 H 0 1 N N N N N N -14.018 6.652 47.490 -4.502 -3.195 -0.394 H56 YQ9 56 YQ9 H57 H19 H 0 1 N N N N N N -11.565 4.009 45.246 -7.668 -0.315 -0.368 H57 YQ9 57 YQ9 H58 H20 H 0 1 N N N N N N -12.972 3.935 44.132 -7.255 -0.421 1.360 H58 YQ9 58 YQ9 H59 H21 H 0 1 N N N N N N -11.066 7.374 42.423 -4.254 2.603 0.351 H59 YQ9 59 YQ9 H60 H22 H 0 1 N N N N N N -9.927 9.695 44.228 -2.927 2.084 -2.443 H60 YQ9 60 YQ9 H61 H23 H 0 1 N N N N N N -9.193 9.082 42.708 -3.451 3.723 -1.778 H61 YQ9 61 YQ9 H63 H24 H 0 1 N N N N N N -11.373 9.699 41.406 -1.864 3.436 0.179 H63 YQ9 62 YQ9 H62 H25 H 0 1 N N N N N N -12.107 10.312 42.927 -1.340 1.797 -0.485 H62 YQ9 63 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YQ9 N1 C2 SING N N 1 YQ9 N1 C5 SING N N 2 YQ9 N1 C26 SING N N 3 YQ9 C2 C3 SING N N 4 YQ9 C3 C4 SING N N 5 YQ9 C3 C6 SING N N 6 YQ9 C4 C5 SING N N 7 YQ9 C4 C7 SING N N 8 YQ9 C6 C7 SING N N 9 YQ9 C6 C8 SING N N 10 YQ9 C7 C10 SING N N 11 YQ9 C8 N9 SING N N 12 YQ9 N9 C10 SING N N 13 YQ9 N9 C15 SING N N 14 YQ9 C15 C16 SING N N 15 YQ9 C15 O17 DOUB N N 16 YQ9 C16 C18 DOUB Y N 17 YQ9 C16 C20 SING Y N 18 YQ9 C18 C19 SING Y N 19 YQ9 C19 C22 DOUB Y N 20 YQ9 C20 C21 DOUB Y N 21 YQ9 C21 C22 SING Y N 22 YQ9 C21 N25 SING Y N 23 YQ9 C22 N23 SING Y N 24 YQ9 N23 N24 SING Y N 25 YQ9 N24 N25 DOUB Y N 26 YQ9 C26 C27 SING N N 27 YQ9 C26 O28 DOUB N N 28 YQ9 C27 C29 DOUB Y N 29 YQ9 C27 C31 SING Y N 30 YQ9 C29 C30 SING Y N 31 YQ9 C30 C33 DOUB Y N 32 YQ9 C30 C40 SING N N 33 YQ9 C31 N32 DOUB Y N 34 YQ9 N32 C33 SING Y N 35 YQ9 C33 O34 SING N N 36 YQ9 O34 C35 SING N N 37 YQ9 C35 C36 SING N N 38 YQ9 C36 F37 SING N N 39 YQ9 C36 F38 SING N N 40 YQ9 C36 F39 SING N N 41 YQ9 C40 C41 SING N N 42 YQ9 C40 C42 SING N N 43 YQ9 C41 C42 SING N N 44 YQ9 C10 H49 SING N N 45 YQ9 C10 H50 SING N N 46 YQ9 C18 H51 SING N N 47 YQ9 C19 H52 SING N N 48 YQ9 C20 H53 SING N N 49 YQ9 C2 H44 SING N N 50 YQ9 C2 H43 SING N N 51 YQ9 C3 H12 SING N N 52 YQ9 C4 H11 SING N N 53 YQ9 C5 H45 SING N N 54 YQ9 C5 H46 SING N N 55 YQ9 C6 H14 SING N N 56 YQ9 C7 H13 SING N N 57 YQ9 C8 H48 SING N N 58 YQ9 C8 H47 SING N N 59 YQ9 N23 H54 SING N N 60 YQ9 C29 H55 SING N N 61 YQ9 C31 H56 SING N N 62 YQ9 C35 H57 SING N N 63 YQ9 C35 H58 SING N N 64 YQ9 C40 H59 SING N N 65 YQ9 C41 H60 SING N N 66 YQ9 C41 H61 SING N N 67 YQ9 C42 H63 SING N N 68 YQ9 C42 H62 SING N N 69 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YQ9 SMILES ACDLabs 12.01 "FC(F)(F)COc1ncc(cc1C1CC1)C(=O)N1CC2C3CN(CC3C2C1)C(=O)c1cc2nn[NH]c2cc1" YQ9 InChI InChI 1.06 "InChI=1S/C26H25F3N6O3/c27-26(28,29)12-38-23-16(13-1-2-13)5-15(7-30-23)25(37)35-10-19-17-8-34(9-18(17)20(19)11-35)24(36)14-3-4-21-22(6-14)32-33-31-21/h3-7,13,17-20H,1-2,8-12H2,(H,31,32,33)" YQ9 InChIKey InChI 1.06 ODUJWCLJMROQME-UHFFFAOYSA-N YQ9 SMILES_CANONICAL CACTVS 3.385 "FC(F)(F)COc1ncc(cc1C2CC2)C(=O)N3C[C@H]4[C@@H]5CN(C[C@@H]5[C@H]4C3)C(=O)c6ccc7[nH]nnc7c6" YQ9 SMILES CACTVS 3.385 "FC(F)(F)COc1ncc(cc1C2CC2)C(=O)N3C[CH]4[CH]5CN(C[CH]5[CH]4C3)C(=O)c6ccc7[nH]nnc7c6" YQ9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1C(=O)N3C[C@@H]4[C@H](C3)[C@@H]5[C@H]4CN(C5)C(=O)c6cc(c(nc6)OCC(F)(F)F)C7CC7)nn[nH]2" YQ9 SMILES "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1C(=O)N3CC4C(C3)C5C4CN(C5)C(=O)c6cc(c(nc6)OCC(F)(F)F)C7CC7)nn[nH]2" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YQ9 "SYSTEMATIC NAME" ACDLabs 12.01 "[(3aR,3bS,6aR,6bS)-5-(1H-benzotriazole-5-carbonyl)octahydrocyclobuta[1,2-c:3,4-c']dipyrrol-2(1H)-yl][5-cyclopropyl-6-(2,2,2-trifluoroethoxy)pyridin-3-yl]methanone" YQ9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "1~{H}-benzotriazol-5-yl-[(1~{R},2~{R},6~{S},7~{S})-9-[5-cyclopropyl-6-[2,2,2-tris(fluoranyl)ethoxy]pyridin-3-yl]carbonyl-4,9-diazatricyclo[5.3.0.0^{2,6}]decan-4-yl]methanone" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YQ9 "Create component" 2023-06-19 RCSB YQ9 "Initial release" 2024-12-18 RCSB #