data_YQB # _chem_comp.id YQB _chem_comp.name "(3S)-9-[(1R)-1-(2-carboxyanilino)ethyl]-3-cyano-7-methyl-4-oxo-2-(piperidin-1-yl)-3,4-dihydropyrido[1,2-a]pyrimidin-5-ium" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H25 N5 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-12-08 _chem_comp.pdbx_modified_date 2024-03-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 431.487 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YQB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8V8U _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YQB C1 C1 C 0 1 N N N N N N -7.644 21.067 -59.696 0.954 1.402 2.445 C1 YQB 1 YQB C10 C2 C 0 1 N N N N N N -8.712 18.348 -55.660 2.802 -0.993 -1.662 C10 YQB 2 YQB C13 C3 C 0 1 N N N N N N -6.769 18.893 -60.493 -0.238 2.307 0.468 C13 YQB 3 YQB C14 C4 C 0 1 N N N N N N -7.836 18.061 -60.668 -0.514 3.607 0.166 C14 YQB 4 YQB C15 C5 C 0 1 N N N N N N -7.887 17.139 -61.740 -1.775 3.947 -0.342 C15 YQB 5 YQB C16 C6 C 0 1 N N N N N N -6.851 17.064 -62.622 -2.711 2.989 -0.530 C16 YQB 6 YQB C18 C7 C 0 1 N N N N N N -4.671 17.785 -63.409 -3.402 0.754 -0.431 C18 YQB 7 YQB C2 C8 C 0 1 N N R N N N -6.773 19.863 -59.306 1.112 1.925 1.016 C2 YQB 8 YQB C20 C9 C 0 1 N N N N N N -3.547 18.638 -63.255 -3.118 -0.594 -0.118 C20 YQB 9 YQB C21 C10 C 0 1 N N N N N N -3.546 19.533 -62.205 -1.845 -0.908 0.406 C21 YQB 10 YQB C23 C11 C 0 1 N N N N N N -5.648 18.837 -61.411 -1.226 1.325 0.271 C23 YQB 11 YQB C25 C12 C 0 1 N N N N N N -1.074 20.021 -61.975 -1.961 -3.318 -0.138 C25 YQB 12 YQB C26 C13 C 0 1 N N N N N N -0.414 20.036 -60.591 -0.737 -4.161 -0.510 C26 YQB 13 YQB C27 C14 C 0 1 N N N N N N -0.578 21.372 -59.866 -0.019 -4.602 0.768 C27 YQB 14 YQB C28 C15 C 0 1 N N N N N N -2.078 21.653 -59.781 0.459 -3.369 1.538 C28 YQB 15 YQB C29 C16 C 0 1 N N N N N N -2.741 21.675 -61.164 -0.752 -2.518 1.933 C29 YQB 16 YQB C30 C17 C 0 1 N N N N N N -2.523 18.465 -64.246 -4.103 -1.615 -0.314 C30 YQB 17 YQB C32 C18 C 0 1 N N N N N N -9.111 16.258 -61.869 -2.089 5.381 -0.679 C32 YQB 18 YQB C4 C19 C 0 1 Y N N N N N -6.895 18.154 -57.419 3.081 0.722 0.129 C4 YQB 19 YQB C5 C20 C 0 1 Y N N N N N -5.741 17.494 -57.867 3.898 1.467 0.970 C5 YQB 20 YQB C6 C21 C 0 1 Y N N N N N -5.210 16.448 -57.135 5.267 1.304 0.925 C6 YQB 21 YQB C7 C22 C 0 1 Y N N N N N -5.810 16.033 -55.950 5.839 0.400 0.044 C7 YQB 22 YQB C8 C23 C 0 1 Y N N N N N -6.950 16.673 -55.498 5.045 -0.348 -0.798 C8 YQB 23 YQB C9 C24 C 0 1 Y N N N N N -7.515 17.738 -56.213 3.656 -0.196 -0.765 C9 YQB 24 YQB N17 N1 N 0 1 N N N N N N -5.731 17.900 -62.473 -2.445 1.686 -0.231 N17 YQB 25 YQB N22 N2 N 0 1 N N N N N N -4.573 19.605 -61.312 -0.950 0.056 0.573 N22 YQB 26 YQB N24 N3 N 0 1 N N N N N N -2.505 20.430 -61.952 -1.529 -2.210 0.725 N24 YQB 27 YQB N3 N4 N 0 1 N N N N N N -7.438 19.217 -58.159 1.702 0.879 0.176 N3 YQB 28 YQB N31 N5 N 0 1 N N N N N N -1.701 18.337 -65.029 -4.884 -2.425 -0.469 N31 YQB 29 YQB O11 O1 O 0 1 N N N N N N -9.635 17.701 -55.188 3.361 -1.787 -2.596 O11 YQB 30 YQB O12 O2 O 0 1 N N N N N N -8.838 19.687 -55.646 1.592 -0.934 -1.560 O12 YQB 31 YQB O19 O3 O 0 1 N N N N N N -4.808 16.948 -64.323 -4.488 1.068 -0.885 O19 YQB 32 YQB H1 H1 H 0 1 N N N N N N -7.670 21.786 -58.864 0.516 2.180 3.070 H1 YQB 33 YQB H2 H2 H 0 1 N N N N N N -7.220 21.552 -60.588 0.303 0.528 2.442 H2 YQB 34 YQB H3 H3 H 0 1 N N N N N N -8.666 20.724 -59.916 1.931 1.126 2.841 H3 YQB 35 YQB H4 H4 H 0 1 N N N N N N -8.661 18.107 -59.972 0.235 4.371 0.317 H4 YQB 36 YQB H5 H5 H 0 1 N N N N N N -6.891 16.359 -63.439 -3.679 3.259 -0.926 H5 YQB 37 YQB H6 H6 H 0 1 N N N N N N -5.750 20.183 -59.057 1.764 2.799 1.018 H6 YQB 38 YQB H8 H8 H 0 1 N N N N N N -1.009 19.001 -62.381 -2.419 -2.919 -1.043 H8 YQB 39 YQB H9 H9 H 0 1 N N N N N N -0.524 20.712 -62.631 -2.682 -3.937 0.396 H9 YQB 40 YQB H10 H10 H 0 1 N N N N N N -0.870 19.245 -59.977 -1.057 -5.039 -1.070 H10 YQB 41 YQB H11 H11 H 0 1 N N N N N N 0.660 19.833 -60.713 -0.058 -3.566 -1.122 H11 YQB 42 YQB H12 H12 H 0 1 N N N N N N -0.148 21.309 -58.856 -0.706 -5.176 1.390 H12 YQB 43 YQB H13 H13 H 0 1 N N N N N N -0.075 22.172 -60.429 0.838 -5.222 0.507 H13 YQB 44 YQB H14 H14 H 0 1 N N N N N N -2.229 22.631 -59.300 0.990 -3.685 2.436 H14 YQB 45 YQB H15 H15 H 0 1 N N N N N N -2.552 20.868 -59.173 1.126 -2.782 0.908 H15 YQB 46 YQB H16 H16 H 0 1 N N N N N N -2.339 22.528 -61.730 -1.374 -3.072 2.636 H16 YQB 47 YQB H17 H17 H 0 1 N N N N N N -3.825 21.803 -61.029 -0.412 -1.592 2.397 H17 YQB 48 YQB H18 H18 H 0 1 N N N N N N -9.815 16.486 -61.055 -1.820 5.578 -1.717 H18 YQB 49 YQB H19 H19 H 0 1 N N N N N N -9.597 16.445 -62.838 -3.155 5.562 -0.540 H19 YQB 50 YQB H20 H20 H 0 1 N N N N N N -8.810 15.202 -61.808 -1.520 6.041 -0.025 H20 YQB 51 YQB H21 H21 H 0 1 N N N N N N -5.266 17.804 -58.786 3.461 2.174 1.659 H21 YQB 52 YQB H22 H22 H 0 1 N N N N N N -4.320 15.948 -57.487 5.898 1.886 1.581 H22 YQB 53 YQB H23 H23 H 0 1 N N N N N N -5.387 15.215 -55.386 6.912 0.282 0.016 H23 YQB 54 YQB H24 H24 H 0 1 N N N N N N -7.413 16.346 -54.578 5.496 -1.052 -1.482 H24 YQB 55 YQB H25 H25 H 0 1 N N N N N N -7.603 19.948 -57.497 1.129 0.297 -0.348 H25 YQB 56 YQB H26 H26 H 0 1 N N N N N N -10.312 18.292 -54.880 2.760 -2.291 -3.161 H26 YQB 57 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YQB N31 C30 TRIP N N 1 YQB O19 C18 DOUB N N 2 YQB C30 C20 SING N N 3 YQB C18 C20 SING N N 4 YQB C18 N17 SING N N 5 YQB C20 C21 DOUB N N 6 YQB C16 N17 SING N N 7 YQB C16 C15 DOUB N N 8 YQB N17 C23 SING N N 9 YQB C21 N24 SING N N 10 YQB C21 N22 SING N N 11 YQB C25 N24 SING N N 12 YQB C25 C26 SING N N 13 YQB N24 C29 SING N N 14 YQB C32 C15 SING N N 15 YQB C15 C14 SING N N 16 YQB C23 N22 DOUB N N 17 YQB C23 C13 SING N N 18 YQB C29 C28 SING N N 19 YQB C14 C13 DOUB N N 20 YQB C26 C27 SING N N 21 YQB C13 C2 SING N N 22 YQB C27 C28 SING N N 23 YQB C1 C2 SING N N 24 YQB C2 N3 SING N N 25 YQB N3 C4 SING N N 26 YQB C5 C4 DOUB Y N 27 YQB C5 C6 SING Y N 28 YQB C4 C9 SING Y N 29 YQB C6 C7 DOUB Y N 30 YQB C9 C10 SING N N 31 YQB C9 C8 DOUB Y N 32 YQB C7 C8 SING Y N 33 YQB C10 O12 DOUB N N 34 YQB C10 O11 SING N N 35 YQB C1 H1 SING N N 36 YQB C1 H2 SING N N 37 YQB C1 H3 SING N N 38 YQB C14 H4 SING N N 39 YQB C16 H5 SING N N 40 YQB C2 H6 SING N N 41 YQB C25 H8 SING N N 42 YQB C25 H9 SING N N 43 YQB C26 H10 SING N N 44 YQB C26 H11 SING N N 45 YQB C27 H12 SING N N 46 YQB C27 H13 SING N N 47 YQB C28 H14 SING N N 48 YQB C28 H15 SING N N 49 YQB C29 H16 SING N N 50 YQB C29 H17 SING N N 51 YQB C32 H18 SING N N 52 YQB C32 H19 SING N N 53 YQB C32 H20 SING N N 54 YQB C5 H21 SING N N 55 YQB C6 H22 SING N N 56 YQB C7 H23 SING N N 57 YQB C8 H24 SING N N 58 YQB N3 H25 SING N N 59 YQB O11 H26 SING N N 60 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YQB SMILES ACDLabs 12.01 "O=C(O)c1ccccc1NC(C)C1=CC(C)=CN2C1=NC(=C(C#N)C2=O)N1CCCCC1" YQB InChI InChI 1.06 "InChI=1S/C24H25N5O3/c1-15-12-18(16(2)26-20-9-5-4-8-17(20)24(31)32)22-27-21(28-10-6-3-7-11-28)19(13-25)23(30)29(22)14-15/h4-5,8-9,12,14,16,26H,3,6-7,10-11H2,1-2H3,(H,31,32)/t16-/m1/s1" YQB InChIKey InChI 1.06 KKORABQVCKPBGA-MRXNPFEDSA-N YQB SMILES_CANONICAL CACTVS 3.385 "C[C@@H](Nc1ccccc1C(O)=O)C2=CC(=CN3C(=O)C(=C(N=C23)N4CCCCC4)C#N)C" YQB SMILES CACTVS 3.385 "C[CH](Nc1ccccc1C(O)=O)C2=CC(=CN3C(=O)C(=C(N=C23)N4CCCCC4)C#N)C" YQB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1=CN2C(=NC(=C(C2=O)C#N)N3CCCCC3)C(=C1)[C@@H](C)Nc4ccccc4C(=O)O" YQB SMILES "OpenEye OEToolkits" 2.0.7 "CC1=CN2C(=NC(=C(C2=O)C#N)N3CCCCC3)C(=C1)C(C)Nc4ccccc4C(=O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YQB "SYSTEMATIC NAME" ACDLabs 12.01 "2-({(1R)-1-[(5S)-3-cyano-7-methyl-4-oxo-2-(piperidin-1-yl)-4H-pyrido[1,2-a]pyrimidin-9-yl]ethyl}amino)benzoic acid" YQB "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-[[(1~{R})-1-(3-cyano-7-methyl-4-oxidanylidene-2-piperidin-1-yl-pyrido[1,2-a]pyrimidin-9-yl)ethyl]amino]benzoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YQB "Create component" 2023-12-08 RCSB YQB "Modify value order" 2024-03-08 RCSB YQB "Initial release" 2024-03-20 RCSB #