data_YQM # _chem_comp.id YQM _chem_comp.name Eravacycline _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H31 F N4 O8" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-03-23 _chem_comp.pdbx_modified_date 2021-05-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 558.555 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YQM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7M4Y _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YQM C01 C1 C 0 1 N N N 164.088 219.086 254.974 -5.235 1.946 2.922 C01 YQM 1 YQM C03 C2 C 0 1 N N N 165.395 217.763 253.423 -7.180 1.947 1.479 C03 YQM 2 YQM C04 C3 C 0 1 N N S 166.475 219.749 254.632 -4.975 1.602 0.539 C04 YQM 3 YQM C05 C4 C 0 1 N N S 166.016 220.880 253.575 -3.638 0.928 0.780 C05 YQM 4 YQM C06 C5 C 0 1 N N N 167.186 221.199 252.638 -2.592 1.431 -0.214 C06 YQM 5 YQM C07 C6 C 0 1 N N R 166.959 222.261 251.489 -1.204 1.019 0.286 C07 YQM 6 YQM C08 C7 C 0 1 N N N 168.332 222.569 250.752 -0.152 1.429 -0.742 C08 YQM 7 YQM C09 C8 C 0 1 Y N N 168.200 223.602 249.603 1.194 0.876 -0.354 C09 YQM 8 YQM C10 C9 C 0 1 Y N N 169.020 223.590 248.411 2.342 1.602 -0.590 C10 YQM 9 YQM C11 C10 C 0 1 Y N N 168.924 224.516 247.348 3.581 1.078 -0.249 C11 YQM 10 YQM C12 C11 C 0 1 Y N N 167.971 225.568 247.382 3.676 -0.178 0.331 C12 YQM 11 YQM C13 C12 C 0 1 Y N N 167.151 225.602 248.568 2.524 -0.920 0.581 C13 YQM 12 YQM C14 C13 C 0 1 Y N N 167.250 224.628 249.689 1.275 -0.387 0.242 C14 YQM 13 YQM C15 C14 C 0 1 N N N 166.355 224.650 250.985 0.039 -1.132 0.527 C15 YQM 14 YQM C16 C15 C 0 1 N N N 166.286 223.575 251.909 -1.173 -0.467 0.519 C16 YQM 15 YQM C17 C16 C 0 1 N N N 165.228 223.324 252.988 -2.340 -1.195 0.730 C17 YQM 16 YQM C19 C17 C 0 1 N N R 165.491 222.221 254.193 -3.707 -0.581 0.763 C19 YQM 17 YQM C20 C18 C 0 1 N N N 166.480 222.766 255.389 -4.531 -1.117 -0.368 C20 YQM 18 YQM C21 C19 C 0 1 N N N 166.984 221.847 256.329 -5.450 -0.356 -1.043 C21 YQM 19 YQM C22 C20 C 0 1 N N N 166.686 220.364 256.086 -5.648 1.046 -0.683 C22 YQM 20 YQM C24 C21 C 0 1 N N N 167.611 222.232 257.745 -6.239 -0.953 -2.134 C24 YQM 21 YQM C32 C22 C 0 1 N N N 166.892 227.536 245.984 6.032 -0.290 0.003 C32 YQM 22 YQM C34 C23 C 0 1 N N N 166.849 228.562 244.789 7.371 -0.912 0.306 C34 YQM 23 YQM C36 C24 C 0 1 N N N 167.424 229.056 242.465 9.673 -1.034 -0.450 C36 YQM 24 YQM C37 C25 C 0 1 N N N 167.132 228.299 241.208 10.753 -0.029 0.001 C37 YQM 25 YQM C38 C26 C 0 1 N N N 166.055 227.290 241.609 10.150 1.340 -0.410 C38 YQM 26 YQM C39 C27 C 0 1 N N N 166.086 227.164 243.132 8.641 1.109 -0.147 C39 YQM 27 YQM F40 F1 F 0 1 N N N 169.954 222.626 248.270 2.261 2.826 -1.155 F40 YQM 28 YQM N02 N1 N 0 1 N N N 165.464 218.607 254.660 -5.841 1.387 1.706 N02 YQM 29 YQM N26 N2 N 0 1 N N N 167.881 223.540 258.237 -7.364 -1.640 -1.854 N26 YQM 30 YQM N31 N3 N 0 1 N N N 167.906 226.536 246.247 4.933 -0.701 0.665 N31 YQM 31 YQM N35 N4 N 0 1 N N N 167.247 227.981 243.519 8.400 -0.296 -0.542 N35 YQM 32 YQM O18 O1 O 0 1 N N N 164.138 223.848 253.116 -2.245 -2.396 0.897 O18 YQM 33 YQM O23 O2 O 0 1 N N N 166.587 219.561 257.005 -6.354 1.757 -1.368 O23 YQM 34 YQM O25 O3 O 0 1 N N N 167.904 221.324 258.518 -5.874 -0.826 -3.287 O25 YQM 35 YQM O27 O4 O 0 1 N N N 167.056 223.938 254.984 -4.362 -2.396 -0.735 O27 YQM 36 YQM O28 O5 O 0 1 N N N 164.252 221.964 254.792 -4.341 -1.000 1.974 O28 YQM 37 YQM O29 O6 O 0 1 N N N 165.698 225.842 251.178 0.088 -2.455 0.794 O29 YQM 38 YQM O30 O7 O 0 1 N N N 166.208 226.608 248.662 2.612 -2.149 1.150 O30 YQM 39 YQM O33 O8 O 0 1 N N N 165.945 227.650 246.742 5.944 0.582 -0.836 O33 YQM 40 YQM H1 H1 H 0 1 N N N 164.114 219.709 255.880 -5.930 1.844 3.755 H1 YQM 41 YQM H2 H2 H 0 1 N N N 163.706 219.681 254.131 -4.314 1.409 3.149 H2 YQM 42 YQM H3 H3 H 0 1 N N N 163.428 218.222 255.142 -5.010 3.001 2.763 H3 YQM 43 YQM H4 H4 H 0 1 N N N 164.637 216.977 253.557 -7.634 1.464 0.614 H4 YQM 44 YQM H5 H5 H 0 1 N N N 165.122 218.393 252.564 -7.800 1.773 2.359 H5 YQM 45 YQM H6 H6 H 0 1 N N N 166.376 217.300 253.240 -7.099 3.019 1.297 H6 YQM 46 YQM H7 H7 H 0 1 N N N 167.443 219.352 254.292 -4.817 2.672 0.404 H7 YQM 47 YQM H8 H8 H 0 1 N N N 165.203 220.449 252.972 -3.294 1.229 1.770 H8 YQM 48 YQM H9 H9 H 0 1 N N N 167.483 220.256 252.156 -2.775 0.987 -1.193 H9 YQM 49 YQM H10 H10 H 0 1 N N N 168.013 221.568 253.263 -2.649 2.517 -0.288 H10 YQM 50 YQM H11 H11 H 0 1 N N N 166.304 221.785 250.745 -0.993 1.534 1.223 H11 YQM 51 YQM H12 H12 H 0 1 N N N 168.720 221.629 250.332 -0.434 1.041 -1.722 H12 YQM 52 YQM H13 H13 H 0 1 N N N 169.044 222.961 251.493 -0.095 2.516 -0.787 H13 YQM 53 YQM H14 H14 H 0 1 N N N 169.584 224.422 246.498 4.476 1.652 -0.437 H14 YQM 54 YQM H19 H19 H 0 1 N N N 167.528 229.396 245.020 7.619 -0.749 1.354 H19 YQM 55 YQM H20 H20 H 0 1 N N N 165.821 228.943 244.692 7.328 -1.982 0.105 H20 YQM 56 YQM H21 H21 H 0 1 N N N 168.450 229.453 242.465 9.934 -1.447 -1.425 H21 YQM 57 YQM H22 H22 H 0 1 N N N 166.712 229.882 242.611 9.583 -1.838 0.281 H22 YQM 58 YQM H23 H23 H 0 1 N N N 168.034 227.782 240.847 10.899 -0.078 1.080 H23 YQM 59 YQM H24 H24 H 0 1 N N N 166.759 228.975 240.425 11.691 -0.210 -0.524 H24 YQM 60 YQM H25 H25 H 0 1 N N N 165.067 227.646 241.282 10.537 2.142 0.219 H25 YQM 61 YQM H26 H26 H 0 1 N N N 166.265 226.314 241.147 10.335 1.548 -1.464 H26 YQM 62 YQM H27 H27 H 0 1 N N N 165.161 227.558 243.578 8.413 1.250 0.909 H27 YQM 63 YQM H28 H28 H 0 1 N N N 166.223 226.116 243.437 8.041 1.783 -0.759 H28 YQM 64 YQM H30 H30 H 0 1 N N N 168.278 223.660 259.147 -7.694 -1.680 -0.942 H30 YQM 65 YQM H31 H31 H 0 1 N N N 167.673 224.339 257.673 -7.844 -2.095 -2.563 H31 YQM 66 YQM H32 H32 H 0 1 N N N 168.655 226.488 245.587 5.011 -1.360 1.373 H32 YQM 67 YQM H34 H34 H 0 1 N N N 167.630 224.262 255.668 -4.849 -2.697 -1.513 H34 YQM 68 YQM H35 H35 H 0 1 N N N 163.601 222.561 254.443 -4.433 -1.959 2.057 H35 YQM 69 YQM H36 H36 H 0 1 N N N 165.178 225.793 251.971 0.390 -2.995 0.052 H36 YQM 70 YQM H37 H37 H 0 1 N N N 166.118 227.038 247.820 2.575 -2.139 2.116 H37 YQM 71 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YQM C37 C38 SING N N 1 YQM C37 C36 SING N N 2 YQM C38 C39 SING N N 3 YQM C36 N35 SING N N 4 YQM C39 N35 SING N N 5 YQM N35 C34 SING N N 6 YQM C34 C32 SING N N 7 YQM C32 N31 SING N N 8 YQM C32 O33 DOUB N N 9 YQM N31 C12 SING N N 10 YQM C11 C12 DOUB Y N 11 YQM C11 C10 SING Y N 12 YQM C12 C13 SING Y N 13 YQM F40 C10 SING N N 14 YQM C10 C09 DOUB Y N 15 YQM C13 O30 SING N N 16 YQM C13 C14 DOUB Y N 17 YQM C09 C14 SING Y N 18 YQM C09 C08 SING N N 19 YQM C14 C15 SING N N 20 YQM C08 C07 SING N N 21 YQM C15 O29 SING N N 22 YQM C15 C16 DOUB N N 23 YQM C07 C16 SING N N 24 YQM C07 C06 SING N N 25 YQM C16 C17 SING N N 26 YQM C06 C05 SING N N 27 YQM C17 O18 DOUB N N 28 YQM C17 C19 SING N N 29 YQM C03 N02 SING N N 30 YQM C05 C19 SING N N 31 YQM C05 C04 SING N N 32 YQM C19 O28 SING N N 33 YQM C19 C20 SING N N 34 YQM C04 N02 SING N N 35 YQM C04 C22 SING N N 36 YQM N02 C01 SING N N 37 YQM O27 C20 SING N N 38 YQM C20 C21 DOUB N N 39 YQM C22 C21 SING N N 40 YQM C22 O23 DOUB N N 41 YQM C21 C24 SING N N 42 YQM C24 N26 SING N N 43 YQM C24 O25 DOUB N N 44 YQM C01 H1 SING N N 45 YQM C01 H2 SING N N 46 YQM C01 H3 SING N N 47 YQM C03 H4 SING N N 48 YQM C03 H5 SING N N 49 YQM C03 H6 SING N N 50 YQM C04 H7 SING N N 51 YQM C05 H8 SING N N 52 YQM C06 H9 SING N N 53 YQM C06 H10 SING N N 54 YQM C07 H11 SING N N 55 YQM C08 H12 SING N N 56 YQM C08 H13 SING N N 57 YQM C11 H14 SING N N 58 YQM C34 H19 SING N N 59 YQM C34 H20 SING N N 60 YQM C36 H21 SING N N 61 YQM C36 H22 SING N N 62 YQM C37 H23 SING N N 63 YQM C37 H24 SING N N 64 YQM C38 H25 SING N N 65 YQM C38 H26 SING N N 66 YQM C39 H27 SING N N 67 YQM C39 H28 SING N N 68 YQM N26 H30 SING N N 69 YQM N26 H31 SING N N 70 YQM N31 H32 SING N N 71 YQM O27 H34 SING N N 72 YQM O28 H35 SING N N 73 YQM O29 H36 SING N N 74 YQM O30 H37 SING N N 75 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YQM SMILES ACDLabs 12.01 "O=C(Nc1cc(F)c2CC3CC4C(N(C)C)C(=O)C(C(N)=O)=C(O)C4(O)C(=O)C3=C(O)c2c1O)CN1CCCC1" YQM InChI InChI 1.03 "InChI=1S/C27H31FN4O8/c1-31(2)20-13-8-11-7-12-14(28)9-15(30-16(33)10-32-5-3-4-6-32)21(34)18(12)22(35)17(11)24(37)27(13,40)25(38)19(23(20)36)26(29)39/h9,11,13,20,34-35,38,40H,3-8,10H2,1-2H3,(H2,29,39)(H,30,33)/t11-,13-,20-,27-/m0/s1" YQM InChIKey InChI 1.03 AKLMFDDQCHURPW-ISIOAQNYSA-N YQM SMILES_CANONICAL CACTVS 3.385 "CN(C)[C@H]1[C@@H]2C[C@@H]3Cc4c(F)cc(NC(=O)CN5CCCC5)c(O)c4C(=C3C(=O)[C@]2(O)C(=C(C(N)=O)C1=O)O)O" YQM SMILES CACTVS 3.385 "CN(C)[CH]1[CH]2C[CH]3Cc4c(F)cc(NC(=O)CN5CCCC5)c(O)c4C(=C3C(=O)[C]2(O)C(=C(C(N)=O)C1=O)O)O" YQM SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(C)[C@H]1[C@@H]2C[C@@H]3Cc4c(cc(c(c4C(=C3C(=O)[C@@]2(C(=C(C1=O)C(=O)N)O)O)O)O)NC(=O)CN5CCCC5)F" YQM SMILES "OpenEye OEToolkits" 2.0.7 "CN(C)C1C2CC3Cc4c(cc(c(c4C(=C3C(=O)C2(C(=C(C1=O)C(=O)N)O)O)O)O)NC(=O)CN5CCCC5)F" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YQM "SYSTEMATIC NAME" ACDLabs 12.01 "(4S,4aS,5aR,12aR)-4-(dimethylamino)-7-fluoro-1,10,11,12a-tetrahydroxy-3,12-dioxo-9-[2-(pyrrolidin-1-yl)acetamido]-3,4,4a,5,5a,6,12,12a-octahydrotetracene-2-carboxamide" YQM "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(4~{S},4~{a}~{S},5~{a}~{R},12~{a}~{R})-4-(dimethylamino)-7-fluoranyl-1,10,11,12~{a}-tetrakis(oxidanyl)-3,12-bis(oxidanylidene)-9-(2-pyrrolidin-1-ylethanoylamino)-4~{a},5,5~{a},6-tetrahydro-4~{H}-tetracene-2-carboxamide" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id YQM _pdbx_chem_comp_synonyms.name "(4S,4aS,5aR,12aR)-4-(dimethylamino)-7-fluoro-1,10,11,12a-tetrahydroxy-3,12-dioxo-9-[2-(pyrrolidin-1-yl)acetamido]-3,4,4a,5,5a,6,12,12a-octahydrotetracene-2-carboxamide" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YQM "Create component" 2021-03-23 RCSB YQM "Initial release" 2021-05-19 RCSB ##