data_YQN # _chem_comp.id YQN _chem_comp.name "~{N}-(4-~{tert}-butylphenyl)-~{N}-[(1~{S})-2-(cyclohexylamino)-2-oxidanylidene-1-pyridin-3-yl-ethyl]-2,6-bis(oxidanylidene)-5~{H}-pyrimidine-5-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H33 N5 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-20 _chem_comp.pdbx_modified_date 2024-01-26 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 503.593 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YQN _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8PH4 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YQN C10 C1 C 0 1 N N N N N N 26.296 -11.866 -6.223 -4.204 -3.817 -1.964 C10 YQN 1 YQN C13 C2 C 0 1 Y N N N N N 23.383 -9.122 -5.265 -2.155 -0.913 1.091 C13 YQN 2 YQN C15 C3 C 0 1 Y N N N N N 20.590 -8.660 -6.754 0.708 -1.772 1.240 C15 YQN 3 YQN C20 C4 C 0 1 Y N N N N N 20.538 -9.983 -7.180 0.897 -2.419 2.452 C20 YQN 4 YQN C21 C5 C 0 1 N N N N N N 18.893 -9.073 -4.976 2.157 -0.099 0.164 C21 YQN 5 YQN C24 C6 C 0 1 N N N N N N 16.166 -10.433 -6.400 5.480 -1.598 -0.307 C24 YQN 6 YQN C26 C7 C 0 1 N N N N N N 13.702 -9.950 -6.256 7.348 -0.068 -0.948 C26 YQN 7 YQN C28 C8 C 0 1 N N N N N N 15.303 -8.441 -5.018 5.175 0.877 -0.156 C28 YQN 8 YQN C02 C9 C 0 1 N N N N N N 21.167 -7.655 -3.166 -0.205 1.732 0.507 C02 YQN 9 YQN C04 C10 C 0 1 Y N N N N N 22.219 -9.463 -4.583 -1.292 -0.355 0.157 C04 YQN 10 YQN C05 C11 C 0 1 Y N N N N N 22.028 -10.766 -4.146 -1.531 -0.535 -1.199 C05 YQN 11 YQN C06 C12 C 0 1 Y N N N N N 23.001 -11.725 -4.375 -2.626 -1.267 -1.615 C06 YQN 12 YQN C07 C13 C 0 1 Y N N N N N 24.158 -11.379 -5.053 -3.484 -1.821 -0.682 C07 YQN 13 YQN C08 C14 C 0 1 N N N N N N 25.216 -12.445 -5.310 -4.677 -2.619 -1.139 C08 YQN 14 YQN C09 C15 C 0 1 N N N N N N 24.511 -13.618 -5.994 -5.584 -1.735 -1.997 C09 YQN 15 YQN C11 C16 C 0 1 N N N N N N 25.845 -12.906 -3.994 -5.456 -3.116 0.081 C11 YQN 16 YQN C12 C17 C 0 1 Y N N N N N 24.350 -10.082 -5.501 -3.245 -1.648 0.669 C12 YQN 17 YQN C14 C18 C 0 1 N N S N N N 20.121 -8.265 -5.345 0.999 -0.299 1.107 C14 YQN 18 YQN C16 C19 C 0 1 Y N N N N N 21.072 -7.688 -7.617 0.254 -2.496 0.154 C16 YQN 19 YQN C18 C20 C 0 1 Y N N N N N 21.440 -9.249 -9.258 0.161 -4.432 1.400 C18 YQN 20 YQN C19 C21 C 0 1 Y N N N N N 20.976 -10.273 -8.459 0.617 -3.774 2.528 C19 YQN 21 YQN C23 C22 C 0 1 N N N N N N 16.421 -9.464 -5.247 4.482 -0.449 -0.473 C23 YQN 22 YQN C25 C23 C 0 1 N N N N N N 14.764 -11.037 -6.391 6.655 -1.395 -1.265 C25 YQN 23 YQN C27 C24 C 0 1 N N N N N N 13.922 -9.098 -5.005 6.351 1.081 -1.114 C27 YQN 24 YQN C30 C25 C 0 1 N N N N N N 22.279 -7.825 -2.157 -1.448 2.441 0.034 C30 YQN 25 YQN C31 C26 C 0 1 N N N N N N 22.196 -8.773 -1.010 -2.267 2.821 1.253 C31 YQN 26 YQN C33 C27 C 0 1 N N N N N N 24.524 -8.045 -0.289 -2.140 5.034 0.596 C33 YQN 27 YQN C35 C28 C 0 1 N N N N N N 23.493 -6.995 -2.370 -1.025 3.584 -0.871 C35 YQN 28 YQN N03 N1 N 0 1 N N N N N N 21.175 -8.467 -4.354 -0.184 0.387 0.582 N03 YQN 29 YQN N17 N2 N 0 1 Y N N N N N 21.477 -8.001 -8.831 -0.002 -3.785 0.263 N17 YQN 30 YQN N22 N3 N 0 1 N N N N N N 17.621 -8.721 -5.572 3.357 -0.644 0.445 N22 YQN 31 YQN N32 N4 N 0 1 N N N N N N 23.310 -8.877 -0.081 -2.544 4.074 1.433 N32 YQN 32 YQN N34 N5 N 0 1 N N N N N N 24.603 -7.106 -1.439 -1.414 4.827 -0.511 N34 YQN 33 YQN O01 O1 O 0 1 N N N N N N 20.323 -6.839 -3.008 0.777 2.372 0.819 O01 YQN 34 YQN O29 O2 O 0 1 N N N N N N 18.987 -9.973 -4.223 2.008 0.553 -0.848 O29 YQN 35 YQN O36 O3 O 0 1 N N N N N N 23.545 -6.246 -3.297 -0.368 3.390 -1.871 O36 YQN 36 YQN O37 O4 O 0 1 N N N N N N 25.440 -8.118 0.462 -2.454 6.179 0.858 O37 YQN 37 YQN H1 H1 H 0 1 N N N N N N 26.792 -11.025 -5.717 -3.558 -4.447 -1.353 H1 YQN 38 YQN H2 H2 H 0 1 N N N N N N 27.038 -12.645 -6.453 -5.067 -4.395 -2.295 H2 YQN 39 YQN H3 H3 H 0 1 N N N N N N 25.835 -11.512 -7.157 -3.649 -3.463 -2.833 H3 YQN 40 YQN H4 H4 H 0 1 N N N N N N 23.531 -8.109 -5.609 -1.972 -0.775 2.147 H4 YQN 41 YQN H5 H5 H 0 1 N N N N N N 20.166 -10.762 -6.530 1.255 -1.879 3.317 H5 YQN 42 YQN H6 H6 H 0 1 N N N N N N 16.898 -11.252 -6.335 5.846 -1.615 0.720 H6 YQN 43 YQN H7 H7 H 0 1 N N N N N N 16.305 -9.891 -7.347 4.987 -2.543 -0.533 H7 YQN 44 YQN H8 H8 H 0 1 N N N N N N 13.743 -9.300 -7.142 7.715 -0.085 0.078 H8 YQN 45 YQN H9 H9 H 0 1 N N N N N N 12.712 -10.425 -6.195 8.185 0.077 -1.630 H9 YQN 46 YQN H10 H10 H 0 1 N N N N N N 15.469 -7.943 -4.051 4.464 1.696 -0.274 H10 YQN 47 YQN H11 H11 H 0 1 N N N N N N 15.334 -7.694 -5.825 5.542 0.860 0.871 H11 YQN 48 YQN H12 H12 H 0 1 N N N N N N 21.119 -11.033 -3.627 -0.862 -0.102 -1.928 H12 YQN 49 YQN H13 H13 H 0 1 N N N N N N 22.858 -12.737 -4.027 -2.812 -1.407 -2.669 H13 YQN 50 YQN H14 H14 H 0 1 N N N N N N 23.738 -14.023 -5.324 -6.447 -2.312 -2.328 H14 YQN 51 YQN H15 H15 H 0 1 N N N N N N 24.043 -13.271 -6.927 -5.921 -0.881 -1.409 H15 YQN 52 YQN H16 H16 H 0 1 N N N N N N 25.246 -14.404 -6.223 -5.029 -1.381 -2.866 H16 YQN 53 YQN H17 H17 H 0 1 N N N N N N 25.065 -13.322 -3.340 -4.810 -3.746 0.692 H17 YQN 54 YQN H18 H18 H 0 1 N N N N N N 26.601 -13.678 -4.200 -5.793 -2.263 0.669 H18 YQN 55 YQN H19 H19 H 0 1 N N N N N N 26.322 -12.049 -3.496 -6.319 -3.694 -0.250 H19 YQN 56 YQN H20 H20 H 0 1 N N N N N N 25.253 -9.821 -6.033 -3.917 -2.082 1.395 H20 YQN 57 YQN H21 H21 H 0 1 N N N N N N 19.843 -7.201 -5.363 1.252 0.111 2.085 H21 YQN 58 YQN H22 H22 H 0 1 N N N N N N 21.116 -6.660 -7.290 0.108 -2.001 -0.794 H22 YQN 59 YQN H23 H23 H 0 1 N N N N N N 21.781 -9.474 -10.258 -0.059 -5.488 1.451 H23 YQN 60 YQN H24 H24 H 0 1 N N N N N N 20.955 -11.288 -8.828 0.749 -4.309 3.457 H24 YQN 61 YQN H25 H25 H 0 1 N N N N N N 16.572 -10.040 -4.322 4.116 -0.432 -1.499 H25 YQN 62 YQN H26 H26 H 0 1 N N N N N N 14.602 -11.584 -7.332 7.366 -2.213 -1.147 H26 YQN 63 YQN H27 H27 H 0 1 N N N N N N 14.677 -11.732 -5.543 6.289 -1.377 -2.291 H27 YQN 64 YQN H28 H28 H 0 1 N N N N N N 13.152 -8.313 -4.965 6.844 2.026 -0.888 H28 YQN 65 YQN H29 H29 H 0 1 N N N N N N 13.838 -9.739 -4.115 5.984 1.098 -2.140 H29 YQN 66 YQN H30 H30 H 0 1 N N N N N N 21.841 -7.030 -1.536 -2.031 1.739 -0.561 H30 YQN 67 YQN H31 H31 H 0 1 N N N N N N 21.313 -9.379 -0.870 -2.609 2.069 1.949 H31 YQN 68 YQN H32 H32 H 0 1 N N N N N N 17.571 -7.957 -6.215 3.475 -1.165 1.254 H32 YQN 69 YQN H33 H33 H 0 1 N N N N N N 25.423 -6.549 -1.572 -1.164 5.584 -1.064 H33 YQN 70 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YQN C18 N17 DOUB Y N 1 YQN C18 C19 SING Y N 2 YQN N17 C16 SING Y N 3 YQN C19 C20 DOUB Y N 4 YQN C16 C15 DOUB Y N 5 YQN C20 C15 SING Y N 6 YQN C15 C14 SING N N 7 YQN C24 C25 SING N N 8 YQN C24 C23 SING N N 9 YQN C25 C26 SING N N 10 YQN C26 C27 SING N N 11 YQN C10 C08 SING N N 12 YQN C09 C08 SING N N 13 YQN N22 C23 SING N N 14 YQN N22 C21 SING N N 15 YQN C12 C13 DOUB Y N 16 YQN C12 C07 SING Y N 17 YQN C14 C21 SING N N 18 YQN C14 N03 SING N N 19 YQN C08 C07 SING N N 20 YQN C08 C11 SING N N 21 YQN C13 C04 SING Y N 22 YQN C23 C28 SING N N 23 YQN C07 C06 DOUB Y N 24 YQN C28 C27 SING N N 25 YQN C21 O29 DOUB N N 26 YQN C04 N03 SING N N 27 YQN C04 C05 DOUB Y N 28 YQN C06 C05 SING Y N 29 YQN N03 C02 SING N N 30 YQN O36 C35 DOUB N N 31 YQN C02 O01 DOUB N N 32 YQN C02 C30 SING N N 33 YQN C35 C30 SING N N 34 YQN C35 N34 SING N N 35 YQN C30 C31 SING N N 36 YQN N34 C33 SING N N 37 YQN C31 N32 DOUB N N 38 YQN C33 N32 SING N N 39 YQN C33 O37 DOUB N N 40 YQN C10 H1 SING N N 41 YQN C10 H2 SING N N 42 YQN C10 H3 SING N N 43 YQN C13 H4 SING N N 44 YQN C20 H5 SING N N 45 YQN C24 H6 SING N N 46 YQN C24 H7 SING N N 47 YQN C26 H8 SING N N 48 YQN C26 H9 SING N N 49 YQN C28 H10 SING N N 50 YQN C28 H11 SING N N 51 YQN C05 H12 SING N N 52 YQN C06 H13 SING N N 53 YQN C09 H14 SING N N 54 YQN C09 H15 SING N N 55 YQN C09 H16 SING N N 56 YQN C11 H17 SING N N 57 YQN C11 H18 SING N N 58 YQN C11 H19 SING N N 59 YQN C12 H20 SING N N 60 YQN C14 H21 SING N N 61 YQN C16 H22 SING N N 62 YQN C18 H23 SING N N 63 YQN C19 H24 SING N N 64 YQN C23 H25 SING N N 65 YQN C25 H26 SING N N 66 YQN C25 H27 SING N N 67 YQN C27 H28 SING N N 68 YQN C27 H29 SING N N 69 YQN C30 H30 SING N N 70 YQN C31 H31 SING N N 71 YQN N22 H32 SING N N 72 YQN N34 H33 SING N N 73 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YQN InChI InChI 1.06 "InChI=1S/C28H33N5O4/c1-28(2,3)19-11-13-21(14-12-19)33(26(36)22-17-30-27(37)32-24(22)34)23(18-8-7-15-29-16-18)25(35)31-20-9-5-4-6-10-20/h7-8,11-17,20,22-23H,4-6,9-10H2,1-3H3,(H,31,35)(H,32,34,37)/t22-,23-/m0/s1" YQN InChIKey InChI 1.06 IZDUHWAQOVIQDS-GOTSBHOMSA-N YQN SMILES_CANONICAL CACTVS 3.385 "CC(C)(C)c1ccc(cc1)N([C@H](C(=O)NC2CCCCC2)c3cccnc3)C(=O)[C@H]4C=NC(=O)NC4=O" YQN SMILES CACTVS 3.385 "CC(C)(C)c1ccc(cc1)N([CH](C(=O)NC2CCCCC2)c3cccnc3)C(=O)[CH]4C=NC(=O)NC4=O" YQN SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)(C)c1ccc(cc1)N([C@@H](c2cccnc2)C(=O)NC3CCCCC3)C(=O)C4C=NC(=O)NC4=O" YQN SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)(C)c1ccc(cc1)N(C(c2cccnc2)C(=O)NC3CCCCC3)C(=O)C4C=NC(=O)NC4=O" # _pdbx_chem_comp_identifier.comp_id YQN _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-(4-~{tert}-butylphenyl)-~{N}-[(1~{S})-2-(cyclohexylamino)-2-oxidanylidene-1-pyridin-3-yl-ethyl]-2,6-bis(oxidanylidene)-5~{H}-pyrimidine-5-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YQN "Create component" 2023-06-20 PDBE YQN "Initial release" 2024-01-31 RCSB #