data_YQR # _chem_comp.id YQR _chem_comp.name "7-[(1~{S})-1-[2-(aminomethyl)-6-oxidanylidene-5-oxa-7-azaspiro[3.4]octan-7-yl]ethyl]-3-(1-methylpyrazol-4-yl)-1~{H}-indole-2-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H25 N5 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-20 _chem_comp.pdbx_modified_date 2024-07-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 423.465 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YQR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8PH3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YQR C19 C1 C 0 1 Y N N N N N -22.388 -12.205 12.017 0.735 1.191 -0.598 C19 YQR 1 YQR C17 C2 C 0 1 Y N N N N N -21.582 -14.239 10.981 2.273 2.438 0.806 C17 YQR 2 YQR C18 C3 C 0 1 Y N N N N N -21.875 -12.870 10.894 1.949 1.272 0.109 C18 YQR 3 YQR C16 C4 C 0 1 Y N N N N N -21.848 -14.897 12.169 1.410 3.497 0.798 C16 YQR 4 YQR C15 C5 C 0 1 Y N N N N N -22.381 -14.227 13.287 0.212 3.424 0.101 C15 YQR 5 YQR C14 C6 C 0 1 Y N N N N N -22.651 -12.869 13.230 -0.129 2.284 -0.593 C14 YQR 6 YQR C10 C7 C 0 1 N N N N N N -27.731 -12.718 15.742 -3.800 -1.712 0.504 C10 YQR 7 YQR C12 C8 C 0 1 N N N N N N -25.516 -11.483 13.545 -2.800 1.636 0.662 C12 YQR 8 YQR C21 C9 C 0 1 Y N N N N N -22.221 -10.728 10.414 1.802 -0.781 -0.883 C21 YQR 9 YQR C22 C10 C 0 1 N N N N N N -22.430 -9.402 9.771 2.081 -2.143 -1.336 C22 YQR 10 YQR C01 C11 C 0 1 N N N N N N -22.706 -12.470 15.771 -1.994 3.633 -1.515 C01 YQR 11 YQR C02 C12 C 0 1 N N S N N N -23.247 -12.069 14.427 -1.434 2.219 -1.344 C02 YQR 12 YQR C04 C13 C 0 1 N N N N N N -25.459 -13.386 14.865 -3.059 0.188 -1.094 C04 YQR 13 YQR C05 C14 C 0 1 N N N N N N -26.871 -13.062 14.553 -3.931 -0.247 0.088 C05 YQR 14 YQR C06 C15 C 0 1 N N N N N N -27.813 -14.168 14.171 -5.398 -0.525 -0.239 C06 YQR 15 YQR C07 C16 C 0 1 N N N N N N -28.789 -13.644 15.216 -5.315 -1.683 0.776 C07 YQR 16 YQR C08 C17 C 0 1 N N N N N N -29.361 -14.675 16.118 -6.043 -2.950 0.322 C08 YQR 17 YQR C25 C18 C 0 1 Y N N N N N -21.766 -11.920 9.862 2.630 -0.013 -0.083 C25 YQR 18 YQR C26 C19 C 0 1 Y N N N N N -21.261 -12.165 8.476 3.943 -0.411 0.472 C26 YQR 19 YQR C27 C20 C 0 1 Y N N N N N -20.422 -11.379 7.686 5.084 -0.690 -0.248 C27 YQR 20 YQR C29 C21 C 0 1 N N N N N N -19.501 -11.610 5.385 7.428 -1.376 0.301 C29 YQR 21 YQR C31 C22 C 0 1 Y N N N N N -21.569 -13.270 7.691 4.260 -0.571 1.837 C31 YQR 22 YQR N03 N1 N 0 1 N N N N N N -24.695 -12.268 14.383 -2.390 1.402 -0.594 N03 YQR 23 YQR N09 N2 N 0 1 N N N N N N -30.539 -15.288 15.527 -6.010 -3.947 1.399 N09 YQR 24 YQR N20 N3 N 0 1 Y N N N N N -22.551 -10.907 11.682 0.669 -0.048 -1.190 N20 YQR 25 YQR N28 N4 N 0 1 Y N N N N N -20.280 -12.025 6.535 6.050 -1.010 0.634 N28 YQR 26 YQR N30 N5 N 0 1 Y N N N N N -20.976 -13.135 6.527 5.512 -0.928 1.924 N30 YQR 27 YQR O11 O1 O 0 1 N N N N N N -26.799 -11.993 13.615 -3.682 0.736 1.121 O11 YQR 28 YQR O13 O2 O 0 1 N N N N N N -25.197 -10.569 12.846 -2.408 2.577 1.324 O13 YQR 29 YQR O23 O3 O 0 1 N N N N N N -22.840 -9.390 8.579 3.114 -2.695 -1.004 O23 YQR 30 YQR O24 O4 O 0 1 N N N N N N -22.380 -8.356 10.476 1.194 -2.788 -2.122 O24 YQR 31 YQR H171 H1 H 0 0 N N N N N N -21.158 -14.768 10.140 3.203 2.502 1.352 H171 YQR 32 YQR H161 H2 H 0 0 N N N N N N -21.641 -15.955 12.241 1.662 4.398 1.339 H161 YQR 33 YQR H151 H3 H 0 0 N N N N N N -22.581 -14.776 14.196 -0.461 4.269 0.104 H151 YQR 34 YQR H101 H4 H 0 0 N N N N N N -27.306 -13.020 16.710 -3.515 -2.374 -0.313 H101 YQR 35 YQR H102 H5 H 0 0 N N N N N N -28.036 -11.662 15.789 -3.197 -1.860 1.400 H102 YQR 36 YQR H011 H6 H 0 0 N N N N N N -23.178 -11.859 16.554 -2.162 4.078 -0.535 H011 YQR 37 YQR H013 H7 H 0 0 N N N N N N -22.926 -13.532 15.953 -1.283 4.241 -2.074 H013 YQR 38 YQR H012 H8 H 0 0 N N N N N N -21.617 -12.313 15.790 -2.938 3.586 -2.059 H012 YQR 39 YQR H021 H9 H 0 0 N N N N N N -23.025 -11.004 14.265 -1.266 1.774 -2.325 H021 YQR 40 YQR H041 H10 H 0 0 N N N N N N -25.154 -14.310 14.352 -2.327 -0.582 -1.335 H041 YQR 41 YQR H042 H11 H 0 0 N N N N N N -25.322 -13.506 15.950 -3.675 0.417 -1.963 H042 YQR 42 YQR H061 H12 H 0 0 N N N N N N -28.182 -14.114 13.136 -6.073 0.275 0.064 H061 YQR 43 YQR H062 H13 H 0 0 N N N N N N -27.432 -15.180 14.372 -5.562 -0.854 -1.265 H062 YQR 44 YQR H071 H14 H 0 0 N N N N N N -29.591 -13.070 14.728 -5.570 -1.390 1.794 H071 YQR 45 YQR H082 H15 H 0 0 N N N N N N -28.605 -15.452 16.301 -7.079 -2.707 0.083 H082 YQR 46 YQR H081 H16 H 0 0 N N N N N N -29.641 -14.203 17.072 -5.552 -3.354 -0.563 H081 YQR 47 YQR H271 H17 H 0 0 N N N N N N -19.977 -10.433 7.957 5.185 -0.658 -1.323 H271 YQR 48 YQR H291 H18 H 0 0 N N N N N N -19.608 -12.353 4.581 8.047 -0.479 0.275 H291 YQR 49 YQR H292 H19 H 0 0 N N N N N N -19.862 -10.633 5.031 7.814 -2.061 1.056 H292 YQR 50 YQR H293 H20 H 0 0 N N N N N N -18.442 -11.528 5.670 7.450 -1.861 -0.674 H293 YQR 51 YQR H311 H21 H 0 0 N N N N N N -22.192 -14.101 7.989 3.584 -0.422 2.666 H311 YQR 52 YQR H091 H22 H 0 0 N N N N N N -30.906 -15.977 16.152 -6.485 -4.794 1.123 H091 YQR 53 YQR H1 H23 H 0 1 N N N N N N -31.232 -14.586 15.361 -5.061 -4.141 1.683 H1 YQR 54 YQR H201 H25 H 0 0 N N N N N N -22.873 -10.189 12.300 -0.065 -0.364 -1.739 H201 YQR 55 YQR H2 H26 H 0 1 N N N N N N -22.689 -7.616 9.967 1.466 -3.682 -2.370 H2 YQR 56 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YQR C29 N28 SING N N 1 YQR N30 N28 SING Y N 2 YQR N30 C31 DOUB Y N 3 YQR N28 C27 SING Y N 4 YQR C27 C26 DOUB Y N 5 YQR C31 C26 SING Y N 6 YQR C26 C25 SING N N 7 YQR O23 C22 DOUB N N 8 YQR C22 C21 SING N N 9 YQR C22 O24 SING N N 10 YQR C25 C21 DOUB Y N 11 YQR C25 C18 SING Y N 12 YQR C21 N20 SING Y N 13 YQR C18 C17 DOUB Y N 14 YQR C18 C19 SING Y N 15 YQR C17 C16 SING Y N 16 YQR N20 C19 SING Y N 17 YQR C19 C14 DOUB Y N 18 YQR C16 C15 DOUB Y N 19 YQR O13 C12 DOUB N N 20 YQR C14 C15 SING Y N 21 YQR C14 C02 SING N N 22 YQR C12 O11 SING N N 23 YQR C12 N03 SING N N 24 YQR O11 C05 SING N N 25 YQR C06 C05 SING N N 26 YQR C06 C07 SING N N 27 YQR N03 C02 SING N N 28 YQR N03 C04 SING N N 29 YQR C02 C01 SING N N 30 YQR C05 C04 SING N N 31 YQR C05 C10 SING N N 32 YQR C07 C10 SING N N 33 YQR C07 C08 SING N N 34 YQR N09 C08 SING N N 35 YQR C17 H171 SING N N 36 YQR C16 H161 SING N N 37 YQR C15 H151 SING N N 38 YQR C10 H101 SING N N 39 YQR C10 H102 SING N N 40 YQR C01 H011 SING N N 41 YQR C01 H013 SING N N 42 YQR C01 H012 SING N N 43 YQR C02 H021 SING N N 44 YQR C04 H041 SING N N 45 YQR C04 H042 SING N N 46 YQR C06 H061 SING N N 47 YQR C06 H062 SING N N 48 YQR C07 H071 SING N N 49 YQR C08 H082 SING N N 50 YQR C08 H081 SING N N 51 YQR C27 H271 SING N N 52 YQR C29 H291 SING N N 53 YQR C29 H292 SING N N 54 YQR C29 H293 SING N N 55 YQR C31 H311 SING N N 56 YQR N09 H091 SING N N 57 YQR N09 H1 SING N N 58 YQR N20 H201 SING N N 59 YQR O24 H2 SING N N 60 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YQR InChI InChI 1.06 "InChI=1S/C22H25N5O4/c1-12(27-11-22(31-21(27)30)6-13(7-22)8-23)15-4-3-5-16-17(14-9-24-26(2)10-14)19(20(28)29)25-18(15)16/h3-5,9-10,12-13,25H,6-8,11,23H2,1-2H3,(H,28,29)/t12-,13-,22-/m0/s1" YQR InChIKey InChI 1.06 BKNRKINLTFUPKK-MZFXBISCSA-N YQR SMILES_CANONICAL CACTVS 3.385 "C[C@H](N1C[C@@]2(C[C@H](CN)C2)OC1=O)c3cccc4c3[nH]c(C(O)=O)c4c5cnn(C)c5" YQR SMILES CACTVS 3.385 "C[CH](N1C[C]2(C[CH](CN)C2)OC1=O)c3cccc4c3[nH]c(C(O)=O)c4c5cnn(C)c5" YQR SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](c1cccc2c1[nH]c(c2c3cnn(c3)C)C(=O)O)N4CC5(CC(C5)CN)OC4=O" YQR SMILES "OpenEye OEToolkits" 2.0.7 "CC(c1cccc2c1[nH]c(c2c3cnn(c3)C)C(=O)O)N4CC5(CC(C5)CN)OC4=O" # _pdbx_chem_comp_identifier.comp_id YQR _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "7-[(1~{S})-1-[2-(aminomethyl)-6-oxidanylidene-5-oxa-7-azaspiro[3.4]octan-7-yl]ethyl]-3-(1-methylpyrazol-4-yl)-1~{H}-indole-2-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YQR "Create component" 2023-06-20 PDBE YQR "Initial release" 2024-07-10 RCSB #