data_YQW # _chem_comp.id YQW _chem_comp.name "7-[(1~{S})-1-[2-(aminomethyl)-6-oxidanylidene-5-oxa-7-azaspiro[3.4]octan-7-yl]ethyl]-3-(6-oxidanylidene-1~{H}-pyridazin-4-yl)-1~{H}-indole-2-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H23 N5 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-20 _chem_comp.pdbx_modified_date 2024-07-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 437.449 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YQW _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8PGZ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YQW C10 C1 C 0 1 Y N N N N N -21.664 -11.895 9.818 -2.439 -0.018 0.130 C10 YQW 1 YQW C11 C2 C 0 1 N N N N N N -21.128 -12.063 8.439 -3.751 -0.445 -0.399 C11 YQW 2 YQW C13 C3 C 0 1 N N N N N N -20.801 -13.339 6.321 -6.142 -0.615 -0.212 C13 YQW 3 YQW N15 N1 N 0 1 N N N N N N -20.012 -12.237 5.849 -6.174 -1.249 -1.400 N15 YQW 4 YQW C17 C4 C 0 1 N N N N N N -20.300 -10.975 7.918 -3.836 -1.120 -1.640 C17 YQW 5 YQW C19 C5 C 0 1 Y N N N N N -21.451 -14.238 10.902 -2.105 2.405 -0.846 C19 YQW 6 YQW C21 C6 C 0 1 Y N N N N N -22.266 -14.220 13.176 -0.043 3.424 -0.192 C21 YQW 7 YQW C01 C7 C 0 1 N N N N N N -22.635 -12.480 15.666 2.175 3.699 1.399 C01 YQW 8 YQW C02 C8 C 0 1 N N S N N N -23.200 -12.099 14.301 1.620 2.278 1.281 C02 YQW 9 YQW C03 C9 C 0 1 Y N N N N N -22.582 -12.871 13.128 0.310 2.311 0.537 C03 YQW 10 YQW C04 C10 C 0 1 Y N N N N N -22.331 -12.237 11.931 -0.549 1.214 0.586 C04 YQW 11 YQW C06 C11 C 0 1 Y N N N N N -22.182 -10.725 10.369 -1.595 -0.750 0.947 C06 YQW 12 YQW C07 C12 C 0 1 N N N N N N -22.376 -9.357 9.777 -1.860 -2.106 1.449 C07 YQW 13 YQW C12 C13 C 0 1 N N N N N N -21.360 -13.245 7.683 -4.910 -0.195 0.318 C12 YQW 14 YQW C18 C14 C 0 1 Y N N N N N -21.774 -12.866 10.831 -1.768 1.265 -0.113 C18 YQW 15 YQW C20 C15 C 0 1 Y N N N N N -21.715 -14.897 12.073 -1.248 3.468 -0.881 C20 YQW 16 YQW C23 C16 C 0 1 N N N N N N -25.429 -13.466 14.700 3.254 0.247 1.087 C23 YQW 17 YQW C24 C17 C 0 1 N N N N N N -26.861 -13.116 14.424 4.122 -0.226 -0.084 C24 YQW 18 YQW C25 C18 C 0 1 N N N N N N -27.841 -14.224 14.057 5.592 -0.484 0.245 C25 YQW 19 YQW C26 C19 C 0 1 N N N N N N -28.830 -13.662 15.073 5.509 -1.677 -0.726 C26 YQW 20 YQW C27 C20 C 0 1 N N N N N N -29.449 -14.583 16.078 6.247 -2.922 -0.230 C27 YQW 21 YQW C29 C21 C 0 1 N N N N N N -27.718 -12.827 15.630 3.996 -1.705 -0.445 C29 YQW 22 YQW C31 C22 C 0 1 N N N N N N -25.507 -11.491 13.458 2.974 1.633 -0.716 C31 YQW 23 YQW N05 N2 N 0 1 Y N N N N N -22.527 -10.942 11.616 -0.471 -0.007 1.214 N05 YQW 24 YQW N16 N3 N 0 1 N N N N N N -19.760 -11.052 6.602 -4.993 -1.498 -2.107 N16 YQW 25 YQW N22 N4 N 0 1 N N N N N N -24.670 -12.315 14.249 2.575 1.441 0.551 N22 YQW 26 YQW N28 N5 N 0 1 N N N N N N -30.579 -15.286 15.485 6.213 -3.958 -1.271 N28 YQW 27 YQW O08 O1 O 0 1 N N N N N N -22.354 -8.312 10.491 -0.958 -2.719 2.242 O08 YQW 28 YQW O09 O2 O 0 1 N N N N N N -22.800 -9.363 8.577 -2.891 -2.674 1.149 O09 YQW 29 YQW O14 O3 O 0 1 N N N N N N -20.922 -14.328 5.621 -7.178 -0.406 0.400 O14 YQW 30 YQW O30 O4 O 0 1 N N N N N N -26.786 -11.998 13.513 3.861 0.718 -1.150 O30 YQW 31 YQW O32 O5 O 0 1 N N N N N N -25.187 -10.541 12.821 2.573 2.548 -1.407 O32 YQW 32 YQW H151 H1 H 0 0 N N N N N N -19.614 -12.304 4.934 -7.023 -1.540 -1.768 H151 YQW 33 YQW H171 H2 H 0 0 N N N N N N -20.098 -10.111 8.533 -2.937 -1.323 -2.203 H171 YQW 34 YQW H191 H3 H 0 0 N N N N N N -21.010 -14.751 10.060 -3.041 2.447 -1.384 H191 YQW 35 YQW H211 H4 H 0 0 N N N N N N -22.449 -14.768 14.089 0.625 4.272 -0.229 H211 YQW 36 YQW H012 H5 H 0 0 N N N N N N -23.129 -11.884 16.447 1.464 4.323 1.942 H012 YQW 37 YQW H011 H6 H 0 0 N N N N N N -22.815 -13.549 15.852 3.122 3.676 1.937 H011 YQW 38 YQW H013 H7 H 0 0 N N N N N N -21.553 -12.282 15.683 2.332 4.112 0.402 H013 YQW 39 YQW H021 H8 H 0 0 N N N N N N -23.001 -11.029 14.140 1.462 1.866 2.277 H021 YQW 40 YQW H121 H9 H 0 0 N N N N N N -21.935 -14.059 8.099 -4.867 0.315 1.269 H121 YQW 41 YQW H201 H10 H 0 0 N N N N N N -21.497 -15.952 12.151 -1.509 4.350 -1.447 H201 YQW 42 YQW H231 H11 H 0 0 N N N N N N -25.136 -14.366 14.140 2.527 -0.518 1.360 H231 YQW 43 YQW H232 H12 H 0 0 N N N N N N -25.272 -13.636 15.775 3.874 0.511 1.944 H232 YQW 44 YQW H252 H13 H 0 0 N N N N N N -28.194 -14.188 13.016 6.261 0.308 -0.091 H252 YQW 45 YQW H251 H14 H 0 0 N N N N N N -27.483 -15.238 14.288 5.764 -0.775 1.281 H251 YQW 46 YQW H261 H15 H 0 0 N N N N N N -29.590 -13.039 14.579 5.757 -1.419 -1.755 H261 YQW 47 YQW H272 H16 H 0 0 N N N N N N -28.699 -15.316 16.410 7.283 -2.665 -0.007 H272 YQW 48 YQW H271 H17 H 0 0 N N N N N N -29.798 -13.998 16.942 5.763 -3.296 0.672 H271 YQW 49 YQW H291 H18 H 0 0 N N N N N N -27.303 -13.211 16.573 3.719 -2.339 0.397 H291 YQW 50 YQW H292 H19 H 0 0 N N N N N N -27.976 -11.764 15.748 3.390 -1.888 -1.332 H292 YQW 51 YQW H051 H20 H 0 0 N N N N N N -22.883 -10.248 12.241 0.271 -0.301 1.765 H051 YQW 52 YQW H282 H21 H 0 0 N N N N N N -30.985 -15.898 16.164 6.598 -3.613 -2.137 H282 YQW 53 YQW H1 H22 H 0 1 N N N N N N -31.263 -14.622 15.183 6.694 -4.791 -0.967 H1 YQW 54 YQW H2 H24 H 0 1 N N N N N N -22.693 -7.579 9.991 -1.176 -3.610 2.547 H2 YQW 55 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YQW O14 C13 DOUB N N 1 YQW N15 C13 SING N N 2 YQW N15 N16 SING N N 3 YQW C13 C12 SING N N 4 YQW N16 C17 DOUB N N 5 YQW C12 C11 DOUB N N 6 YQW C17 C11 SING N N 7 YQW C11 C10 SING N N 8 YQW O09 C07 DOUB N N 9 YQW C07 C06 SING N N 10 YQW C07 O08 SING N N 11 YQW C10 C06 DOUB Y N 12 YQW C10 C18 SING Y N 13 YQW C06 N05 SING Y N 14 YQW C18 C19 DOUB Y N 15 YQW C18 C04 SING Y N 16 YQW C19 C20 SING Y N 17 YQW N05 C04 SING Y N 18 YQW C04 C03 DOUB Y N 19 YQW C20 C21 DOUB Y N 20 YQW O32 C31 DOUB N N 21 YQW C03 C21 SING Y N 22 YQW C03 C02 SING N N 23 YQW C31 O30 SING N N 24 YQW C31 N22 SING N N 25 YQW O30 C24 SING N N 26 YQW C25 C24 SING N N 27 YQW C25 C26 SING N N 28 YQW N22 C02 SING N N 29 YQW N22 C23 SING N N 30 YQW C02 C01 SING N N 31 YQW C24 C23 SING N N 32 YQW C24 C29 SING N N 33 YQW C26 C29 SING N N 34 YQW C26 C27 SING N N 35 YQW N28 C27 SING N N 36 YQW N15 H151 SING N N 37 YQW C17 H171 SING N N 38 YQW C19 H191 SING N N 39 YQW C21 H211 SING N N 40 YQW C01 H012 SING N N 41 YQW C01 H011 SING N N 42 YQW C01 H013 SING N N 43 YQW C02 H021 SING N N 44 YQW C12 H121 SING N N 45 YQW C20 H201 SING N N 46 YQW C23 H231 SING N N 47 YQW C23 H232 SING N N 48 YQW C25 H252 SING N N 49 YQW C25 H251 SING N N 50 YQW C26 H261 SING N N 51 YQW C27 H272 SING N N 52 YQW C27 H271 SING N N 53 YQW C29 H291 SING N N 54 YQW C29 H292 SING N N 55 YQW N05 H051 SING N N 56 YQW N28 H282 SING N N 57 YQW N28 H1 SING N N 58 YQW O08 H2 SING N N 59 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YQW InChI InChI 1.06 "InChI=1S/C22H23N5O5/c1-11(27-10-22(32-21(27)31)6-12(7-22)8-23)14-3-2-4-15-17(13-5-16(28)26-24-9-13)19(20(29)30)25-18(14)15/h2-5,9,11-12,25H,6-8,10,23H2,1H3,(H,26,28)(H,29,30)/t11-,12-,22-/m0/s1" YQW InChIKey InChI 1.06 CGFMMSFCBYQRSU-IBILFNBTSA-N YQW SMILES_CANONICAL CACTVS 3.385 "C[C@H](N1C[C@]2(C[C@@H](CN)C2)OC1=O)c3cccc4c3[nH]c(C(O)=O)c4C5=CC(=O)NN=C5" YQW SMILES CACTVS 3.385 "C[CH](N1C[C]2(C[CH](CN)C2)OC1=O)c3cccc4c3[nH]c(C(O)=O)c4C5=CC(=O)NN=C5" YQW SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](c1cccc2c1[nH]c(c2C3=CC(=O)NN=C3)C(=O)O)N4CC5(CC(C5)CN)OC4=O" YQW SMILES "OpenEye OEToolkits" 2.0.7 "CC(c1cccc2c1[nH]c(c2C3=CC(=O)NN=C3)C(=O)O)N4CC5(CC(C5)CN)OC4=O" # _pdbx_chem_comp_identifier.comp_id YQW _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "7-[(1~{S})-1-[2-(aminomethyl)-6-oxidanylidene-5-oxa-7-azaspiro[3.4]octan-7-yl]ethyl]-3-(6-oxidanylidene-1~{H}-pyridazin-4-yl)-1~{H}-indole-2-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YQW "Create component" 2023-06-20 PDBE YQW "Initial release" 2024-07-10 RCSB #