data_YQX # _chem_comp.id YQX _chem_comp.name "2-oxidanylideneoctanedioic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C8 H12 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-12-11 _chem_comp.pdbx_modified_date 2024-12-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 188.178 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YQX _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8RE5 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YQX C10 C1 C 0 1 N N N N N N -9.545 -25.976 53.620 -4.612 -0.051 -0.001 C10 YQX 1 YQX C2 C2 C 0 1 N N N N N N -7.634 -27.323 45.815 4.217 0.237 0.000 C2 YQX 2 YQX C4 C3 C 0 1 N N N N N N -8.814 -28.165 46.294 2.840 -0.335 -0.000 C4 YQX 3 YQX C5 C4 C 0 1 N N N N N N -8.796 -28.554 47.750 1.644 0.582 0.000 C5 YQX 4 YQX C6 C5 C 0 1 N N N N N N -9.224 -27.425 48.690 0.362 -0.254 -0.001 C6 YQX 5 YQX C7 C6 C 0 1 N N N N N N -9.176 -27.870 50.162 -0.853 0.677 -0.000 C7 YQX 6 YQX C8 C7 C 0 1 N N N N N N -9.432 -26.695 51.152 -2.135 -0.159 -0.001 C8 YQX 7 YQX C9 C8 C 0 1 N N N N N N -9.501 -27.130 52.630 -3.350 0.772 -0.000 C9 YQX 8 YQX O1 O1 O 0 1 N N N N N N -7.449 -27.212 44.563 4.374 1.440 0.001 O1 YQX 9 YQX O11 O2 O 0 1 N N N N N N -9.953 -24.881 53.190 -4.547 -1.258 0.003 O11 YQX 10 YQX O12 O3 O 0 1 N N N N N N -9.263 -26.188 54.829 -5.809 0.557 -0.001 O12 YQX 11 YQX O13 O4 O 0 1 N N N N N N -9.742 -28.515 45.547 2.684 -1.532 -0.001 O13 YQX 12 YQX O3 O5 O 0 1 N N N N N N -6.909 -26.753 46.727 5.285 -0.581 -0.000 O3 YQX 13 YQX H1 H1 H 0 1 N N N N N N -9.481 -29.403 47.892 1.668 1.210 0.891 H1 YQX 14 YQX H2 H2 H 0 1 N N N N N N -7.773 -28.859 48.016 1.668 1.211 -0.889 H2 YQX 15 YQX H3 H3 H 0 1 N N N N N N -8.547 -26.569 48.553 0.338 -0.882 -0.891 H3 YQX 16 YQX H4 H4 H 0 1 N N N N N N -10.252 -27.123 48.441 0.338 -0.883 0.889 H4 YQX 17 YQX H5 H5 H 0 1 N N N N N N -9.945 -28.640 50.323 -0.829 1.305 0.890 H5 YQX 18 YQX H6 H6 H 0 1 N N N N N N -8.183 -28.295 50.369 -0.829 1.306 -0.890 H6 YQX 19 YQX H7 H7 H 0 1 N N N N N N -8.616 -25.966 51.043 -2.159 -0.787 -0.891 H7 YQX 20 YQX H8 H8 H 0 1 N N N N N N -10.387 -26.219 50.886 -2.159 -0.788 0.889 H8 YQX 21 YQX H9 H9 H 0 1 N N N N N N -10.407 -27.738 52.768 -3.326 1.401 -0.890 H9 YQX 22 YQX H10 H10 H 0 1 N N N N N N -8.613 -27.740 52.851 -3.326 1.400 0.890 H10 YQX 23 YQX H11 H11 H 0 1 N N N N N N -9.411 -25.396 55.333 -6.591 -0.013 -0.001 H11 YQX 24 YQX H12 H12 H 0 1 N N N N N N -6.223 -26.243 46.313 6.158 -0.164 0.000 H12 YQX 25 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YQX O1 C2 DOUB N N 1 YQX O13 C4 DOUB N N 2 YQX C2 C4 SING N N 3 YQX C2 O3 SING N N 4 YQX C4 C5 SING N N 5 YQX C5 C6 SING N N 6 YQX C6 C7 SING N N 7 YQX C7 C8 SING N N 8 YQX C8 C9 SING N N 9 YQX C9 C10 SING N N 10 YQX O11 C10 DOUB N N 11 YQX C10 O12 SING N N 12 YQX C5 H1 SING N N 13 YQX C5 H2 SING N N 14 YQX C6 H3 SING N N 15 YQX C6 H4 SING N N 16 YQX C7 H5 SING N N 17 YQX C7 H6 SING N N 18 YQX C8 H7 SING N N 19 YQX C8 H8 SING N N 20 YQX C9 H9 SING N N 21 YQX C9 H10 SING N N 22 YQX O12 H11 SING N N 23 YQX O3 H12 SING N N 24 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YQX InChI InChI 1.06 "InChI=1S/C8H12O5/c9-6(8(12)13)4-2-1-3-5-7(10)11/h1-5H2,(H,10,11)(H,12,13)" YQX InChIKey InChI 1.06 HAGOOZVJLSSXGZ-UHFFFAOYSA-N YQX SMILES_CANONICAL CACTVS 3.385 "OC(=O)CCCCCC(=O)C(O)=O" YQX SMILES CACTVS 3.385 "OC(=O)CCCCCC(=O)C(O)=O" YQX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C(CCC(=O)C(=O)O)CCC(=O)O" YQX SMILES "OpenEye OEToolkits" 2.0.7 "C(CCC(=O)C(=O)O)CCC(=O)O" # _pdbx_chem_comp_identifier.comp_id YQX _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-oxidanylideneoctanedioic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YQX "Create component" 2023-12-11 PDBE YQX "Initial release" 2024-12-18 RCSB #