data_YR2 # _chem_comp.id YR2 _chem_comp.name "(3R)-1'-[3-(3,4-dihydro-1,5-naphthyridin-1(2H)-yl)-1H-pyrazolo[3,4-b]pyrazin-6-yl]-3H-spiro[[1]benzofuran-2,4'-piperidin]-3-amine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H26 N8 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-20 _chem_comp.pdbx_modified_date 2023-10-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 454.527 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YR2 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8T6D _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YR2 C02 C1 C 0 1 N N R 28.384 42.872 4.387 -4.726 -0.798 0.321 C02 YR2 1 YR2 C03 C2 C 0 1 Y N N 29.585 42.996 3.547 -6.112 -0.548 0.888 C03 YR2 2 YR2 C04 C3 C 0 1 Y N N 29.202 42.939 2.216 -6.760 0.315 0.013 C04 YR2 3 YR2 C06 C4 C 0 1 N N N 27.246 42.565 3.463 -4.607 0.325 -0.728 C06 YR2 4 YR2 C07 C5 C 0 1 N N N 26.090 43.395 3.167 -3.852 -0.176 -1.954 C07 YR2 5 YR2 C08 C6 C 0 1 N N N 25.083 42.781 2.197 -2.402 -0.480 -1.567 C08 YR2 6 YR2 C10 C7 C 0 1 Y N N 23.602 41.158 3.558 -0.422 0.534 -0.793 C10 YR2 7 YR2 C11 C8 C 0 1 Y N N 22.399 41.859 3.466 0.356 1.577 -0.277 C11 YR2 8 YR2 C14 C9 C 0 1 Y N N 22.809 40.076 5.442 1.426 -0.825 -0.856 C14 YR2 9 YR2 C15 C10 C 0 1 Y N N 21.623 40.762 5.361 2.206 0.228 -0.337 C15 YR2 10 YR2 C16 C11 C 0 1 Y N N 20.819 40.305 6.454 3.570 -0.292 -0.222 C16 YR2 11 YR2 C18 C12 C 0 1 N N N 19.141 40.534 8.199 4.587 1.842 0.563 C18 YR2 12 YR2 C19 C13 C 0 1 N N N 17.953 41.310 8.709 5.825 2.533 -0.022 C19 YR2 13 YR2 C20 C14 C 0 1 N N N 16.818 41.552 7.731 7.072 1.984 0.671 C20 YR2 14 YR2 C21 C15 C 0 1 Y N N 17.095 41.139 6.248 7.077 0.478 0.632 C21 YR2 15 YR2 C22 C16 C 0 1 Y N N 18.380 40.750 5.836 5.908 -0.240 0.431 C22 YR2 16 YR2 C23 C17 C 0 1 Y N N 18.582 40.389 4.486 5.954 -1.632 0.406 C23 YR2 17 YR2 C24 C18 C 0 1 Y N N 17.488 40.441 3.608 7.179 -2.254 0.584 C24 YR2 18 YR2 C25 C19 C 0 1 Y N N 16.226 40.847 4.099 8.304 -1.474 0.778 C25 YR2 19 YR2 C29 C20 C 0 1 N N N 25.963 40.570 2.715 -2.457 1.178 0.202 C29 YR2 20 YR2 C30 C21 C 0 1 N N N 26.911 41.181 3.742 -3.910 1.538 -0.124 C30 YR2 21 YR2 C31 C22 C 0 1 Y N N 30.180 43.035 1.202 -8.059 0.721 0.309 C31 YR2 22 YR2 C32 C23 C 0 1 Y N N 31.525 43.184 1.542 -8.687 0.265 1.449 C32 YR2 23 YR2 C33 C24 C 0 1 Y N N 31.908 43.239 2.888 -8.033 -0.600 2.308 C33 YR2 24 YR2 C34 C25 C 0 1 Y N N 30.945 43.145 3.889 -6.742 -1.005 2.024 C34 YR2 25 YR2 N01 N1 N 0 1 N N N 28.123 44.142 5.099 -4.649 -2.120 -0.314 N01 YR2 26 YR2 N09 N2 N 0 1 N N N 24.671 41.367 2.591 -1.778 0.732 -1.021 N09 YR2 27 YR2 N12 N3 N 0 1 Y N N 21.435 41.650 4.366 1.642 1.402 -0.063 N12 YR2 28 YR2 N13 N4 N 0 1 Y N N 23.790 40.287 4.531 0.127 -0.638 -1.070 N13 YR2 29 YR2 N17 N5 N 0 1 N N N 19.479 40.724 6.825 4.683 0.409 0.250 N17 YR2 30 YR2 N26 N6 N 0 1 Y N N 16.064 41.180 5.380 8.225 -0.160 0.796 N26 YR2 31 YR2 N27 N7 N 0 1 Y N N 21.530 39.406 7.127 3.558 -1.530 -0.640 N27 YR2 32 YR2 N28 N8 N 0 1 Y N N 22.745 39.250 6.524 2.266 -1.890 -1.035 N28 YR2 33 YR2 O05 O1 O 0 1 N N N 27.732 42.782 2.133 -5.969 0.626 -1.052 O05 YR2 34 YR2 H021 H1 H 0 0 N N N 28.509 42.052 5.110 -3.964 -0.693 1.093 H021 YR2 35 YR2 H072 H2 H 0 0 N N N 26.451 44.339 2.732 -4.327 -1.084 -2.327 H072 YR2 36 YR2 H071 H3 H 0 0 N N N 25.569 43.603 4.113 -3.870 0.589 -2.730 H071 YR2 37 YR2 H081 H4 H 0 0 N N N 25.535 42.749 1.195 -2.384 -1.268 -0.814 H081 YR2 38 YR2 H082 H5 H 0 0 N N N 24.185 43.416 2.174 -1.851 -0.807 -2.449 H082 YR2 39 YR2 H111 H6 H 0 0 N N N 22.248 42.570 2.667 -0.102 2.529 -0.055 H111 YR2 40 YR2 H182 H7 H 0 0 N N N 18.931 39.464 8.348 4.561 1.982 1.644 H182 YR2 41 YR2 H181 H8 H 0 0 N N N 20.014 40.824 8.802 3.685 2.259 0.115 H181 YR2 42 YR2 H191 H9 H 0 0 N N N 18.317 42.292 9.045 5.884 2.333 -1.092 H191 YR2 43 YR2 H192 H10 H 0 0 N N N 17.540 40.759 9.567 5.756 3.608 0.145 H192 YR2 44 YR2 H201 H11 H 0 0 N N N 16.585 42.627 7.744 7.961 2.360 0.164 H201 YR2 45 YR2 H202 H12 H 0 0 N N N 15.944 40.984 8.082 7.083 2.315 1.709 H202 YR2 46 YR2 H231 H13 H 0 0 N N N 19.556 40.080 4.137 5.056 -2.213 0.253 H231 YR2 47 YR2 H241 H14 H 0 0 N N N 17.609 40.174 2.569 7.254 -3.331 0.572 H241 YR2 48 YR2 H251 H15 H 0 0 N N N 15.381 40.888 3.427 9.264 -1.951 0.916 H251 YR2 49 YR2 H291 H16 H 0 0 N N N 25.719 39.543 3.023 -1.947 2.054 0.602 H291 YR2 50 YR2 H292 H17 H 0 0 N N N 26.464 40.550 1.736 -2.439 0.377 0.941 H292 YR2 51 YR2 H301 H18 H 0 0 N N N 26.433 41.130 4.732 -3.929 2.362 -0.839 H301 YR2 52 YR2 H302 H19 H 0 0 N N N 27.840 40.592 3.753 -4.424 1.837 0.789 H302 YR2 53 YR2 H311 H20 H 0 0 N N N 29.887 42.993 0.163 -8.576 1.397 -0.356 H311 YR2 54 YR2 H321 H21 H 0 0 N N N 32.272 43.257 0.766 -9.694 0.584 1.672 H321 YR2 55 YR2 H331 H22 H 0 0 N N N 32.950 43.354 3.149 -8.530 -0.957 3.199 H331 YR2 56 YR2 H341 H23 H 0 0 N N N 31.239 43.186 4.927 -6.227 -1.680 2.693 H341 YR2 57 YR2 H012 H24 H 0 0 N N N 28.885 44.342 5.714 -4.777 -2.856 0.365 H012 YR2 58 YR2 H011 H25 H 0 0 N N N 28.028 44.883 4.434 -5.318 -2.201 -1.065 H011 YR2 59 YR2 H281 H27 H 0 0 N N N 23.470 38.631 6.827 2.006 -2.758 -1.382 H281 YR2 60 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YR2 C31 C32 DOUB Y N 1 YR2 C31 C04 SING Y N 2 YR2 C32 C33 SING Y N 3 YR2 O05 C04 SING N N 4 YR2 O05 C06 SING N N 5 YR2 C08 N09 SING N N 6 YR2 C08 C07 SING N N 7 YR2 C04 C03 DOUB Y N 8 YR2 N09 C29 SING N N 9 YR2 N09 C10 SING N N 10 YR2 C29 C30 SING N N 11 YR2 C33 C34 DOUB Y N 12 YR2 C07 C06 SING N N 13 YR2 C06 C30 SING N N 14 YR2 C06 C02 SING N N 15 YR2 C11 C10 DOUB Y N 16 YR2 C11 N12 SING Y N 17 YR2 C03 C34 SING Y N 18 YR2 C03 C02 SING N N 19 YR2 C10 N13 SING Y N 20 YR2 C24 C25 DOUB Y N 21 YR2 C24 C23 SING Y N 22 YR2 C25 N26 SING Y N 23 YR2 N12 C15 DOUB Y N 24 YR2 C02 N01 SING N N 25 YR2 C23 C22 DOUB Y N 26 YR2 N13 C14 DOUB Y N 27 YR2 C15 C14 SING Y N 28 YR2 C15 C16 SING Y N 29 YR2 N26 C21 DOUB Y N 30 YR2 C14 N28 SING Y N 31 YR2 C22 C21 SING Y N 32 YR2 C22 N17 SING N N 33 YR2 C21 C20 SING N N 34 YR2 C16 N17 SING N N 35 YR2 C16 N27 DOUB Y N 36 YR2 N28 N27 SING Y N 37 YR2 N17 C18 SING N N 38 YR2 C20 C19 SING N N 39 YR2 C18 C19 SING N N 40 YR2 C02 H021 SING N N 41 YR2 C07 H072 SING N N 42 YR2 C07 H071 SING N N 43 YR2 C08 H081 SING N N 44 YR2 C08 H082 SING N N 45 YR2 C11 H111 SING N N 46 YR2 C18 H182 SING N N 47 YR2 C18 H181 SING N N 48 YR2 C19 H191 SING N N 49 YR2 C19 H192 SING N N 50 YR2 C20 H201 SING N N 51 YR2 C20 H202 SING N N 52 YR2 C23 H231 SING N N 53 YR2 C24 H241 SING N N 54 YR2 C25 H251 SING N N 55 YR2 C29 H291 SING N N 56 YR2 C29 H292 SING N N 57 YR2 C30 H301 SING N N 58 YR2 C30 H302 SING N N 59 YR2 C31 H311 SING N N 60 YR2 C32 H321 SING N N 61 YR2 C33 H331 SING N N 62 YR2 C34 H341 SING N N 63 YR2 N01 H012 SING N N 64 YR2 N01 H011 SING N N 65 YR2 N28 H281 SING N N 66 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YR2 SMILES ACDLabs 12.01 "NC1c2ccccc2OC21CCN(CC2)c1cnc2c(n[NH]c2n1)N1CCCc2ncccc21" YR2 InChI InChI 1.06 "InChI=1S/C25H26N8O/c26-22-16-5-1-2-8-19(16)34-25(22)9-13-32(14-10-25)20-15-28-21-23(29-20)30-31-24(21)33-12-4-6-17-18(33)7-3-11-27-17/h1-3,5,7-8,11,15,22H,4,6,9-10,12-14,26H2,(H,29,30,31)/t22-/m1/s1" YR2 InChIKey InChI 1.06 RGCGBFIARQENML-JOCHJYFZSA-N YR2 SMILES_CANONICAL CACTVS 3.385 "N[C@@H]1c2ccccc2OC13CCN(CC3)c4cnc5c([nH]nc5N6CCCc7ncccc67)n4" YR2 SMILES CACTVS 3.385 "N[CH]1c2ccccc2OC13CCN(CC3)c4cnc5c([nH]nc5N6CCCc7ncccc67)n4" YR2 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)[C@H](C3(O2)CCN(CC3)c4cnc5c(n4)[nH]nc5N6CCCc7c6cccn7)N" YR2 SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)C(C3(O2)CCN(CC3)c4cnc5c(n4)[nH]nc5N6CCCc7c6cccn7)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YR2 "SYSTEMATIC NAME" ACDLabs 12.01 "(3R)-1'-[3-(3,4-dihydro-1,5-naphthyridin-1(2H)-yl)-1H-pyrazolo[3,4-b]pyrazin-6-yl]-3H-spiro[[1]benzofuran-2,4'-piperidin]-3-amine" YR2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(3~{R})-1'-[3-(3,4-dihydro-2~{H}-1,5-naphthyridin-1-yl)-1~{H}-pyrazolo[3,4-b]pyrazin-6-yl]spiro[3~{H}-1-benzofuran-2,4'-piperidine]-3-amine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YR2 "Create component" 2023-06-20 RCSB YR2 "Initial release" 2023-10-11 RCSB #