data_YR5 # _chem_comp.id YR5 _chem_comp.name "3-fluoro-5-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)amino]benzoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H16 F N2 O7 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-12-11 _chem_comp.pdbx_modified_date 2024-05-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 386.269 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YR5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8V9M _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YR5 C13 C1 C 0 1 Y N N N N N 1.126 -20.217 -2.356 -1.235 1.769 0.359 C13 YR5 1 YR5 C20 C2 C 0 1 Y N N N N N 1.897 -20.963 -3.130 -1.392 3.131 0.124 C20 YR5 2 YR5 O23 O1 O 0 1 N N N N N N -2.725 -17.104 -0.562 -5.103 -3.161 -0.446 O23 YR5 3 YR5 C01 C3 C 0 1 Y N N N N N 4.556 -20.765 1.165 2.600 0.171 1.509 C01 YR5 4 YR5 C02 C4 C 0 1 Y N N N N N 4.927 -20.832 2.425 3.846 -0.346 1.818 C02 YR5 5 YR5 C03 C5 C 0 1 Y N N N N N 4.135 -20.153 3.524 4.734 -0.670 0.808 C03 YR5 6 YR5 C04 C6 C 0 1 Y N N N N N 3.038 -19.486 3.140 4.373 -0.476 -0.526 C04 YR5 7 YR5 C05 C7 C 0 1 Y N N N N N 2.588 -19.379 1.707 3.116 0.045 -0.836 C05 YR5 8 YR5 C06 C8 C 0 1 Y N N N N N 3.300 -20.020 0.775 2.233 0.368 0.183 C06 YR5 9 YR5 C07 C9 C 0 1 N N N N N N 2.230 -18.830 4.247 5.320 -0.820 -1.607 C07 YR5 10 YR5 C12 C10 C 0 1 N N N N N N 1.527 -19.800 -0.950 0.041 1.230 0.953 C12 YR5 11 YR5 C14 C11 C 0 1 Y N N N N N -0.226 -19.888 -2.862 -2.283 0.921 0.040 C14 YR5 12 YR5 C15 C12 C 0 1 N N N N N N -1.191 -19.082 -1.978 -2.163 -0.562 0.277 C15 YR5 13 YR5 C16 C13 C 0 1 Y N N N N N -0.637 -20.219 -4.057 -3.441 1.452 -0.497 C16 YR5 14 YR5 C18 C14 C 0 1 Y N N N N N 1.418 -21.351 -4.502 -2.584 3.589 -0.419 C18 YR5 15 YR5 C19 C15 C 0 1 N N N N N N 2.349 -22.215 -5.364 -2.768 5.061 -0.680 C19 YR5 16 YR5 F11 F1 F 0 1 N N N N N N 6.043 -21.533 2.794 4.196 -0.534 3.109 F11 YR5 17 YR5 N10 N1 N 0 1 N N N N N N 2.946 -19.983 -0.621 0.974 0.890 -0.124 N10 YR5 18 YR5 N17 N2 N 0 1 Y N N N N N 0.236 -21.024 -4.932 -3.558 2.748 -0.708 N17 YR5 19 YR5 O08 O2 O 0 1 N N N N N N 2.802 -18.462 5.311 5.004 -0.651 -2.768 O08 YR5 20 YR5 O09 O3 O 0 1 N N N N N N 0.990 -18.725 4.082 6.533 -1.323 -1.306 O09 YR5 21 YR5 O21 O4 O 0 1 N N N N N N 3.162 -21.427 -2.716 -0.391 4.002 0.421 O21 YR5 22 YR5 O24 O5 O 0 1 N N N N N N -0.701 -17.763 -2.030 -3.370 -1.209 -0.132 O24 YR5 23 YR5 O25 O6 O 0 1 N N N N N N -0.539 -17.069 0.403 -3.355 -3.236 1.373 O25 YR5 24 YR5 O26 O7 O 0 1 N N N N N N -1.087 -15.418 -1.226 -2.564 -3.556 -1.002 O26 YR5 25 YR5 P22 P1 P 0 1 N N N N N N -1.267 -16.802 -0.796 -3.592 -2.800 -0.021 P22 YR5 26 YR5 H011 H1 H 0 0 N N N N N N 5.153 -21.246 0.404 1.909 0.419 2.301 H011 YR5 27 YR5 H031 H2 H 0 0 N N N N N N 4.438 -20.204 4.559 5.706 -1.072 1.052 H031 YR5 28 YR5 H051 H3 H 0 0 N N N N N N 1.715 -18.801 1.440 2.833 0.198 -1.867 H051 YR5 29 YR5 H122 H4 H 0 0 N N N N N N 1.285 -18.734 -0.830 0.489 1.986 1.597 H122 YR5 30 YR5 H121 H5 H 0 0 N N N N N N 0.934 -20.393 -0.238 -0.180 0.337 1.538 H121 YR5 31 YR5 H152 H6 H 0 0 N N N N N N -2.215 -19.132 -2.375 -1.326 -0.956 -0.300 H152 YR5 32 YR5 H151 H7 H 0 0 N N N N N N -1.180 -19.460 -0.945 -1.992 -0.748 1.337 H151 YR5 33 YR5 H161 H8 H 0 0 N N N N N N -1.611 -19.905 -4.402 -4.262 0.795 -0.748 H161 YR5 34 YR5 H192 H9 H 0 0 N N N N N N 1.848 -22.463 -6.311 -2.428 5.297 -1.688 H192 YR5 35 YR5 H191 H10 H 0 0 N N N N N N 3.275 -21.659 -5.574 -3.823 5.319 -0.582 H191 YR5 36 YR5 H193 H11 H 0 0 N N N N N N 2.592 -23.142 -4.825 -2.186 5.634 0.043 H193 YR5 37 YR5 H101 H12 H 0 0 N N N N N N 3.451 -19.228 -1.039 0.718 1.027 -1.049 H101 YR5 38 YR5 H1 H13 H 0 1 N N N N N N 0.598 -18.343 4.858 7.117 -1.533 -2.046 H1 YR5 39 YR5 H211 H14 H 0 0 N N N N N N 3.554 -21.942 -3.411 0.229 4.151 -0.306 H211 YR5 40 YR5 H2 H15 H 0 1 N N N N N N -2.847 -17.406 0.330 -5.308 -4.105 -0.403 H2 YR5 41 YR5 H3 H16 H 0 1 N N N N N N -0.515 -14.968 -0.615 -2.662 -3.318 -1.934 H3 YR5 42 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YR5 C01 C02 DOUB Y N 1 YR5 C01 C06 SING Y N 2 YR5 C02 C03 SING Y N 3 YR5 C02 F11 SING N N 4 YR5 C03 C04 DOUB Y N 5 YR5 C04 C05 SING Y N 6 YR5 C04 C07 SING N N 7 YR5 C05 C06 DOUB Y N 8 YR5 C06 N10 SING N N 9 YR5 C07 O08 DOUB N N 10 YR5 C07 O09 SING N N 11 YR5 C12 C13 SING N N 12 YR5 C12 N10 SING N N 13 YR5 C13 C14 DOUB Y N 14 YR5 C13 C20 SING Y N 15 YR5 C14 C15 SING N N 16 YR5 C14 C16 SING Y N 17 YR5 C15 O24 SING N N 18 YR5 C16 N17 DOUB Y N 19 YR5 C18 C19 SING N N 20 YR5 C18 C20 DOUB Y N 21 YR5 C18 N17 SING Y N 22 YR5 C20 O21 SING N N 23 YR5 O23 P22 SING N N 24 YR5 O24 P22 SING N N 25 YR5 O25 P22 DOUB N N 26 YR5 O26 P22 SING N N 27 YR5 C01 H011 SING N N 28 YR5 C03 H031 SING N N 29 YR5 C05 H051 SING N N 30 YR5 C12 H122 SING N N 31 YR5 C12 H121 SING N N 32 YR5 C15 H152 SING N N 33 YR5 C15 H151 SING N N 34 YR5 C16 H161 SING N N 35 YR5 C19 H192 SING N N 36 YR5 C19 H191 SING N N 37 YR5 C19 H193 SING N N 38 YR5 N10 H101 SING N N 39 YR5 O09 H1 SING N N 40 YR5 O21 H211 SING N N 41 YR5 O23 H2 SING N N 42 YR5 O26 H3 SING N N 43 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YR5 SMILES ACDLabs 12.01 "Oc1c(CNc2cc(cc(F)c2)C(=O)O)c(cnc1C)COP(=O)(O)O" YR5 InChI InChI 1.06 "InChI=1S/C15H16FN2O7P/c1-8-14(19)13(10(5-17-8)7-25-26(22,23)24)6-18-12-3-9(15(20)21)2-11(16)4-12/h2-5,18-19H,6-7H2,1H3,(H,20,21)(H2,22,23,24)" YR5 InChIKey InChI 1.06 RBMMNDMOXOAIQD-UHFFFAOYSA-N YR5 SMILES_CANONICAL CACTVS 3.385 "Cc1ncc(CO[P](O)(O)=O)c(CNc2cc(F)cc(c2)C(O)=O)c1O" YR5 SMILES CACTVS 3.385 "Cc1ncc(CO[P](O)(O)=O)c(CNc2cc(F)cc(c2)C(O)=O)c1O" YR5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(c(c(cn1)COP(=O)(O)O)CNc2cc(cc(c2)F)C(=O)O)O" YR5 SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c(c(c(cn1)COP(=O)(O)O)CNc2cc(cc(c2)F)C(=O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YR5 "SYSTEMATIC NAME" ACDLabs 12.01 "3-fluoro-5-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)amino]benzoic acid" YR5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "3-fluoranyl-5-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]benzoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YR5 "Create component" 2023-12-11 RCSB YR5 "Initial release" 2024-05-08 RCSB #