data_YR7 # _chem_comp.id YR7 _chem_comp.name "2-(butylamino)-N-[1-(3-fluoropropyl)piperidin-4-yl]-4-{[(1r,4r)-4-hydroxycyclohexyl]amino}pyrimidine-5-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H39 F N6 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-03-25 _chem_comp.pdbx_modified_date 2021-10-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 450.593 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YR7 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7M5Z _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YR7 C02 C1 C 0 1 N N N -13.642 -14.966 9.362 -3.964 -5.112 -0.124 C02 YR7 1 YR7 C03 C2 C 0 1 N N N -13.150 -16.082 10.288 -4.557 -3.809 -0.665 C03 YR7 2 YR7 C04 C3 C 0 1 N N N -12.163 -16.999 9.572 -3.426 -2.844 -1.023 C04 YR7 3 YR7 C05 C4 C 0 1 N N N -14.328 -15.521 8.109 -3.132 -4.814 1.125 C05 YR7 4 YR7 C06 C5 C 0 1 N N N -13.378 -16.440 7.343 -2.001 -3.848 0.766 C06 YR7 5 YR7 C07 C6 C 0 1 N N N -12.727 -17.507 8.240 -2.594 -2.546 0.226 C07 YR7 6 YR7 C09 C7 C 0 1 Y N N -12.048 -19.419 6.930 -1.742 -0.262 -0.127 C09 YR7 7 YR7 C10 C8 C 0 1 Y N N -11.312 -19.954 5.902 -0.683 0.645 -0.345 C10 YR7 8 YR7 C11 C9 C 0 1 N N N -10.055 -19.178 5.424 0.690 0.165 -0.574 C11 YR7 9 YR7 N12 N1 N 0 1 N N N -9.330 -19.540 4.211 1.706 1.046 -0.666 N12 YR7 10 YR7 C13 C10 C 0 1 N N N -8.156 -18.667 3.996 3.072 0.567 -0.894 C13 YR7 11 YR7 C14 C11 C 0 1 N N N -7.074 -19.532 3.607 3.896 1.673 -1.559 C14 YR7 12 YR7 C15 C12 C 0 1 N N N -7.077 -19.688 2.089 5.337 1.189 -1.738 C15 YR7 13 YR7 C17 C13 C 0 1 N N N -5.527 -18.345 1.406 7.333 0.513 -0.546 C17 YR7 14 YR7 C18 C14 C 0 1 N N N -5.086 -18.884 0.040 7.949 0.409 0.850 C18 YR7 15 YR7 C19 C15 C 0 1 N N N -3.568 -18.858 -0.084 9.434 0.059 0.728 C19 YR7 16 YR7 C21 C16 C 0 1 N N N -7.298 -17.262 2.112 5.160 -0.244 0.208 C21 YR7 17 YR7 C22 C17 C 0 1 N N N -8.443 -17.576 3.087 3.714 0.197 0.446 C22 YR7 18 YR7 C24 C18 C 0 1 Y N N -11.724 -21.181 5.400 -0.973 2.014 -0.338 C24 YR7 19 YR7 C26 C19 C 0 1 Y N N -13.481 -21.197 6.859 -3.189 1.523 0.071 C26 YR7 20 YR7 C28 C20 C 0 1 N N N -15.371 -20.974 8.427 -4.747 3.420 0.285 C28 YR7 21 YR7 C29 C21 C 0 1 N N N -16.551 -20.217 7.785 -6.237 3.655 0.542 C29 YR7 22 YR7 C30 C22 C 0 1 N N N -17.417 -19.536 8.854 -6.523 5.158 0.543 C30 YR7 23 YR7 C31 C23 C 0 1 N N N -16.542 -18.870 9.924 -8.013 5.393 0.800 C31 YR7 24 YR7 F20 F1 F 0 1 N N N -3.041 -19.389 1.058 9.997 -0.036 2.004 F20 YR7 25 YR7 N08 N2 N 0 1 N N N -11.659 -18.155 7.495 -1.511 -1.621 -0.118 N08 YR7 26 YR7 N16 N3 N 0 1 N N N -6.724 -18.431 1.483 5.908 0.849 -0.429 N16 YR7 27 YR7 N25 N4 N 0 1 Y N N -12.813 -21.779 5.879 -2.217 2.405 -0.130 N25 YR7 28 YR7 N27 N5 N 0 1 N N N -14.684 -21.810 7.429 -4.473 1.980 0.284 N27 YR7 29 YR7 N32 N6 N 0 1 Y N N -13.118 -20.038 7.382 -2.964 0.218 0.074 N32 YR7 30 YR7 O01 O1 O 0 1 N N N -14.531 -14.134 10.072 -5.020 -6.014 0.211 O01 YR7 31 YR7 O23 O2 O 0 1 N N N -9.647 -18.259 6.052 0.907 -1.027 -0.679 O23 YR7 32 YR7 H1 H1 H 0 1 N N N -12.767 -14.382 9.040 -3.327 -5.564 -0.885 H1 YR7 33 YR7 H2 H2 H 0 1 N N N -12.653 -15.632 11.160 -5.150 -4.022 -1.555 H2 YR7 34 YR7 H3 H3 H 0 1 N N N -14.013 -16.676 10.624 -5.194 -3.357 0.096 H3 YR7 35 YR7 H4 H4 H 0 1 N N N -11.944 -17.861 10.219 -2.790 -3.296 -1.784 H4 YR7 36 YR7 H5 H5 H 0 1 N N N -11.235 -16.441 9.377 -3.849 -1.916 -1.408 H5 YR7 37 YR7 H6 H6 H 0 1 N N N -14.626 -14.685 7.459 -3.769 -4.361 1.886 H6 YR7 38 YR7 H7 H7 H 0 1 N N N -15.221 -16.090 8.407 -2.709 -5.742 1.510 H7 YR7 39 YR7 H8 H8 H 0 1 N N N -13.945 -16.947 6.548 -1.409 -3.636 1.656 H8 YR7 40 YR7 H9 H9 H 0 1 N N N -12.583 -15.827 6.893 -1.365 -4.301 0.006 H9 YR7 41 YR7 H10 H10 H 0 1 N N N -13.497 -18.258 8.471 -3.231 -2.093 0.986 H10 YR7 42 YR7 H11 H11 H 0 1 N N N -9.594 -20.286 3.600 1.532 1.997 -0.582 H11 YR7 43 YR7 H12 H12 H 0 1 N N N -7.897 -18.227 4.970 3.047 -0.309 -1.541 H12 YR7 44 YR7 H13 H13 H 0 1 N N N -7.203 -20.517 4.078 3.468 1.910 -2.533 H13 YR7 45 YR7 H14 H14 H 0 1 N N N -6.118 -19.094 3.930 3.886 2.563 -0.930 H14 YR7 46 YR7 H15 H15 H 0 1 N N N -8.080 -19.990 1.752 5.347 0.307 -2.379 H15 YR7 47 YR7 H16 H16 H 0 1 N N N -6.345 -20.456 1.797 5.931 1.979 -2.199 H16 YR7 48 YR7 H17 H17 H 0 1 N N N -5.060 -18.938 2.207 7.844 1.291 -1.112 H17 YR7 49 YR7 H18 H18 H 0 1 N N N -5.224 -17.292 1.505 7.439 -0.441 -1.062 H18 YR7 50 YR7 H19 H19 H 0 1 N N N -5.524 -18.260 -0.753 7.842 1.363 1.366 H19 YR7 51 YR7 H20 H20 H 0 1 N N N -5.440 -19.920 -0.071 7.438 -0.370 1.416 H20 YR7 52 YR7 H21 H21 H 0 1 N N N -3.254 -19.456 -0.953 9.540 -0.896 0.211 H21 YR7 53 YR7 H22 H22 H 0 1 N N N -3.222 -17.821 -0.208 9.945 0.837 0.162 H22 YR7 54 YR7 H23 H23 H 0 1 N N N -6.503 -16.743 2.668 5.624 -0.495 1.162 H23 YR7 55 YR7 H24 H24 H 0 1 N N N -7.687 -16.601 1.324 5.170 -1.119 -0.442 H24 YR7 56 YR7 H25 H25 H 0 1 N N N -8.649 -16.674 3.682 3.701 1.063 1.107 H25 YR7 57 YR7 H26 H26 H 0 1 N N N -9.335 -17.839 2.500 3.155 -0.619 0.904 H26 YR7 58 YR7 H27 H27 H 0 1 N N N -11.156 -21.655 4.613 -0.191 2.741 -0.501 H27 YR7 59 YR7 H28 H28 H 0 1 N N N -15.751 -21.616 9.236 -4.473 3.842 -0.681 H28 YR7 60 YR7 H29 H29 H 0 1 N N N -14.658 -20.246 8.841 -4.163 3.900 1.070 H29 YR7 61 YR7 H30 H30 H 0 1 N N N -16.157 -19.451 7.100 -6.821 3.174 -0.243 H30 YR7 62 YR7 H31 H31 H 0 1 N N N -17.171 -20.929 7.221 -6.510 3.232 1.508 H31 YR7 63 YR7 H32 H32 H 0 1 N N N -18.045 -18.771 8.375 -5.939 5.638 1.328 H32 YR7 64 YR7 H33 H33 H 0 1 N N N -18.059 -20.291 9.332 -6.249 5.581 -0.424 H33 YR7 65 YR7 H34 H34 H 0 1 N N N -17.184 -18.390 10.677 -8.217 6.464 0.801 H34 YR7 66 YR7 H35 H35 H 0 1 N N N -15.914 -19.631 10.410 -8.597 4.912 0.014 H35 YR7 67 YR7 H36 H36 H 0 1 N N N -15.900 -18.111 9.452 -8.286 4.970 1.766 H36 YR7 68 YR7 H37 H37 H 0 1 N N N -10.888 -18.307 8.113 -0.632 -1.965 -0.338 H37 YR7 69 YR7 H39 H39 H 0 1 N N N -15.324 -21.998 6.684 -5.194 1.349 0.433 H39 YR7 70 YR7 H40 H40 H 0 1 N N N -14.098 -13.795 10.846 -4.717 -6.863 0.561 H40 YR7 71 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YR7 C19 C18 SING N N 1 YR7 C19 F20 SING N N 2 YR7 C18 C17 SING N N 3 YR7 C17 N16 SING N N 4 YR7 N16 C15 SING N N 5 YR7 N16 C21 SING N N 6 YR7 C15 C14 SING N N 7 YR7 C21 C22 SING N N 8 YR7 C22 C13 SING N N 9 YR7 C14 C13 SING N N 10 YR7 C13 N12 SING N N 11 YR7 N12 C11 SING N N 12 YR7 C24 N25 DOUB Y N 13 YR7 C24 C10 SING Y N 14 YR7 C11 C10 SING N N 15 YR7 C11 O23 DOUB N N 16 YR7 N25 C26 SING Y N 17 YR7 C10 C09 DOUB Y N 18 YR7 C26 N32 DOUB Y N 19 YR7 C26 N27 SING N N 20 YR7 C09 N32 SING Y N 21 YR7 C09 N08 SING N N 22 YR7 C06 C05 SING N N 23 YR7 C06 C07 SING N N 24 YR7 N27 C28 SING N N 25 YR7 N08 C07 SING N N 26 YR7 C29 C28 SING N N 27 YR7 C29 C30 SING N N 28 YR7 C05 C02 SING N N 29 YR7 C07 C04 SING N N 30 YR7 C30 C31 SING N N 31 YR7 C02 O01 SING N N 32 YR7 C02 C03 SING N N 33 YR7 C04 C03 SING N N 34 YR7 C02 H1 SING N N 35 YR7 C03 H2 SING N N 36 YR7 C03 H3 SING N N 37 YR7 C04 H4 SING N N 38 YR7 C04 H5 SING N N 39 YR7 C05 H6 SING N N 40 YR7 C05 H7 SING N N 41 YR7 C06 H8 SING N N 42 YR7 C06 H9 SING N N 43 YR7 C07 H10 SING N N 44 YR7 N12 H11 SING N N 45 YR7 C13 H12 SING N N 46 YR7 C14 H13 SING N N 47 YR7 C14 H14 SING N N 48 YR7 C15 H15 SING N N 49 YR7 C15 H16 SING N N 50 YR7 C17 H17 SING N N 51 YR7 C17 H18 SING N N 52 YR7 C18 H19 SING N N 53 YR7 C18 H20 SING N N 54 YR7 C19 H21 SING N N 55 YR7 C19 H22 SING N N 56 YR7 C21 H23 SING N N 57 YR7 C21 H24 SING N N 58 YR7 C22 H25 SING N N 59 YR7 C22 H26 SING N N 60 YR7 C24 H27 SING N N 61 YR7 C28 H28 SING N N 62 YR7 C28 H29 SING N N 63 YR7 C29 H30 SING N N 64 YR7 C29 H31 SING N N 65 YR7 C30 H32 SING N N 66 YR7 C30 H33 SING N N 67 YR7 C31 H34 SING N N 68 YR7 C31 H35 SING N N 69 YR7 C31 H36 SING N N 70 YR7 N08 H37 SING N N 71 YR7 N27 H39 SING N N 72 YR7 O01 H40 SING N N 73 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YR7 SMILES ACDLabs 12.01 "OC1CCC(CC1)Nc1nc(NCCCC)ncc1C(=O)NC1CCN(CCCF)CC1" YR7 InChI InChI 1.03 "InChI=1S/C23H39FN6O2/c1-2-3-12-25-23-26-16-20(21(29-23)27-17-5-7-19(31)8-6-17)22(32)28-18-9-14-30(15-10-18)13-4-11-24/h16-19,31H,2-15H2,1H3,(H,28,32)(H2,25,26,27,29)/t17-,19-" YR7 InChIKey InChI 1.03 KOWRWJFANSWOCN-UAPYVXQJSA-N YR7 SMILES_CANONICAL CACTVS 3.385 "CCCCNc1ncc(C(=O)NC2CCN(CCCF)CC2)c(N[C@H]3CC[C@H](O)CC3)n1" YR7 SMILES CACTVS 3.385 "CCCCNc1ncc(C(=O)NC2CCN(CCCF)CC2)c(N[CH]3CC[CH](O)CC3)n1" YR7 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCNc1ncc(c(n1)NC2CCC(CC2)O)C(=O)NC3CCN(CC3)CCCF" YR7 SMILES "OpenEye OEToolkits" 2.0.7 "CCCCNc1ncc(c(n1)NC2CCC(CC2)O)C(=O)NC3CCN(CC3)CCCF" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YR7 "SYSTEMATIC NAME" ACDLabs 12.01 "2-(butylamino)-N-[1-(3-fluoropropyl)piperidin-4-yl]-4-{[(1r,4r)-4-hydroxycyclohexyl]amino}pyrimidine-5-carboxamide" YR7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-(butylamino)-~{N}-[1-(3-fluoranylpropyl)piperidin-4-yl]-4-[(4-oxidanylcyclohexyl)amino]pyrimidine-5-carboxamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YR7 "Create component" 2021-03-25 RCSB YR7 "Initial release" 2021-10-06 RCSB ##