data_YR8 # _chem_comp.id YR8 _chem_comp.name "3-[3-fluoranyl-4-(methylsulfonylmethyl)phenyl]-7-[(1~{S})-1-(piperidin-4-ylmethoxy)ethyl]-1~{H}-indole-2-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H29 F N2 O5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-20 _chem_comp.pdbx_modified_date 2024-07-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 488.572 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YR8 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8PG5 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YR8 C15 C1 C 0 1 N N N N N N -22.543 -9.376 9.901 -0.953 -3.468 -0.225 C15 YR8 1 YR8 C18 C2 C 0 1 Y N N N N N -22.016 -11.906 10.028 -0.944 -0.952 0.069 C18 YR8 2 YR8 C19 C3 C 0 1 Y N N N N N -21.413 -12.125 8.667 -2.394 -0.703 -0.089 C19 YR8 3 YR8 C20 C4 C 0 1 Y N N N N N -21.729 -13.202 7.884 -3.298 -1.212 0.845 C20 YR8 4 YR8 C21 C5 C 0 1 Y N N N N N -21.131 -13.310 6.634 -4.649 -0.977 0.694 C21 YR8 5 YR8 C22 C6 C 0 1 Y N N N N N -20.191 -12.427 6.134 -5.110 -0.238 -0.381 C22 YR8 6 YR8 C23 C7 C 0 1 N N N N N N -19.534 -12.616 4.759 -6.587 0.014 -0.539 C23 YR8 7 YR8 C25 C8 C 0 1 N N N N N N -20.579 -10.033 3.779 -8.816 1.651 0.002 C25 YR8 8 YR8 C12 C9 C 0 1 Y N N N N N -22.728 -12.211 12.166 1.317 -0.647 0.386 C12 YR8 9 YR8 N13 N1 N 0 1 Y N N N N N -22.811 -10.887 11.836 1.051 -1.983 0.198 N13 YR8 10 YR8 C01 C10 C 0 1 N N N N N N -22.343 -12.123 15.537 4.020 -1.189 2.119 C01 YR8 11 YR8 C02 C11 C 0 1 N N S N N N -23.533 -12.026 14.582 3.811 -0.669 0.696 C02 YR8 12 YR8 C04 C12 C 0 1 N N N N N N -25.778 -12.391 14.460 5.997 -0.414 -0.252 C04 YR8 13 YR8 C05 C13 C 0 1 N N N N N N -27.026 -12.937 15.085 7.066 0.633 -0.573 C05 YR8 14 YR8 C06 C14 C 0 1 N N N N N N -28.176 -13.032 14.148 7.603 1.232 0.729 C06 YR8 15 YR8 C07 C15 C 0 1 N N N N N N -29.260 -14.096 14.444 8.714 2.234 0.405 C07 YR8 16 YR8 C09 C16 C 0 1 N N N N N N -28.212 -14.784 16.439 9.311 1.010 -1.600 C09 YR8 17 YR8 C10 C17 C 0 1 N N N N N N -26.989 -13.935 16.158 8.218 -0.028 -1.335 C10 YR8 18 YR8 C11 C18 C 0 1 Y N N N N N -23.089 -12.867 13.366 2.494 0.060 0.616 C11 YR8 19 YR8 C14 C19 C 0 1 Y N N N N N -22.412 -10.695 10.583 -0.302 -2.176 0.007 C14 YR8 20 YR8 C28 C20 C 0 1 Y N N N N N -19.855 -11.358 6.944 -4.219 0.270 -1.312 C28 YR8 21 YR8 C30 C21 C 0 1 Y N N N N N -20.442 -11.224 8.210 -2.863 0.046 -1.169 C30 YR8 22 YR8 C31 C22 C 0 1 Y N N N N N -22.242 -12.870 11.029 0.098 0.052 0.315 C31 YR8 23 YR8 C32 C23 C 0 1 Y N N N N N -21.999 -14.270 11.106 0.080 1.440 0.474 C32 YR8 24 YR8 C33 C24 C 0 1 Y N N N N N -22.356 -14.934 12.285 1.247 2.113 0.698 C33 YR8 25 YR8 C34 C25 C 0 1 Y N N N N N -22.911 -14.272 13.411 2.453 1.428 0.769 C34 YR8 26 YR8 F29 F1 F 0 1 N N N N N N -18.953 -10.386 6.570 -4.676 0.991 -2.360 F29 YR8 27 YR8 N08 N2 N 0 1 N N N N N N -29.511 -14.370 15.863 9.792 1.552 -0.323 N08 YR8 28 YR8 O03 O1 O 0 1 N N N N N N -24.625 -12.615 15.218 4.872 0.225 0.354 O03 YR8 29 YR8 O16 O2 O 0 1 N N N N N N -22.415 -8.322 10.580 -0.217 -4.597 -0.264 O16 YR8 30 YR8 O17 O3 O 0 1 N N N N N N -23.056 -9.389 8.729 -2.159 -3.522 -0.376 O17 YR8 31 YR8 O26 O4 O 0 1 N N N N N N -21.904 -12.303 3.517 -6.831 1.363 1.714 O26 YR8 32 YR8 O27 O5 O 0 1 N N N N N N -19.907 -11.928 2.167 -6.394 2.636 -0.335 O27 YR8 33 YR8 S24 S1 S 0 1 N N N N N N -20.523 -11.796 3.460 -7.033 1.549 0.319 S24 YR8 34 YR8 H201 H1 H 0 0 N N N N N N -22.427 -13.951 8.229 -2.940 -1.789 1.685 H201 YR8 35 YR8 H211 H2 H 0 0 N N N N N N -21.421 -14.142 6.009 -5.348 -1.371 1.416 H211 YR8 36 YR8 H232 H3 H 0 0 N N N N N N -19.463 -13.691 4.536 -6.828 0.107 -1.598 H232 YR8 37 YR8 H231 H4 H 0 0 N N N N N N -18.525 -12.178 4.777 -7.146 -0.817 -0.110 H231 YR8 38 YR8 H251 H5 H 0 0 N N N N N N -21.042 -9.852 4.760 -8.992 1.696 -1.073 H251 YR8 39 YR8 H253 H6 H 0 0 N N N N N N -19.557 -9.627 3.776 -9.310 0.771 0.415 H253 YR8 40 YR8 H252 H7 H 0 0 N N N N N N -21.173 -9.538 2.997 -9.219 2.548 0.473 H252 YR8 41 YR8 H131 H8 H 0 0 N N N N N N -23.127 -10.165 12.451 1.718 -2.688 0.199 H131 YR8 42 YR8 H012 H9 H 0 0 N N N N N N -22.558 -11.550 16.451 4.026 -0.350 2.815 H012 YR8 43 YR8 H013 H10 H 0 0 N N N N N N -22.168 -13.177 15.798 3.210 -1.871 2.380 H013 YR8 44 YR8 H011 H11 H 0 0 N N N N N N -21.447 -11.712 15.049 4.972 -1.716 2.177 H011 YR8 45 YR8 H021 H12 H 0 0 N N N N N N -23.717 -10.982 14.287 3.804 -1.508 -0.000 H021 YR8 46 YR8 H041 H13 H 0 0 N N N N N N -25.645 -12.867 13.477 5.683 -0.906 -1.173 H041 YR8 47 YR8 H042 H14 H 0 0 N N N N N N -25.902 -11.306 14.328 6.409 -1.154 0.434 H042 YR8 48 YR8 H051 H15 H 0 0 N N N N N N -27.337 -12.055 15.665 6.630 1.423 -1.186 H051 YR8 49 YR8 H061 H16 H 0 0 N N N N N N -27.769 -13.247 13.149 6.796 1.742 1.256 H061 YR8 50 YR8 H062 H17 H 0 0 N N N N N N -28.673 -12.051 14.138 8.003 0.436 1.358 H062 YR8 51 YR8 H071 H18 H 0 0 N N N N N N -30.203 -13.752 13.994 8.310 3.036 -0.212 H071 YR8 52 YR8 H072 H19 H 0 0 N N N N N N -28.949 -15.037 13.968 9.108 2.651 1.331 H072 YR8 53 YR8 H091 H20 H 0 0 N N N N N N -28.338 -14.819 17.531 10.139 0.539 -2.129 H091 YR8 54 YR8 H092 H21 H 0 0 N N N N N N -27.998 -15.795 16.062 8.904 1.818 -2.207 H092 YR8 55 YR8 H101 H22 H 0 0 N N N N N N -26.168 -14.628 15.921 8.627 -0.844 -0.739 H101 YR8 56 YR8 H102 H23 H 0 0 N N N N N N -26.756 -13.395 17.087 7.850 -0.419 -2.284 H102 YR8 57 YR8 H301 H24 H 0 0 N N N N N N -20.139 -10.407 8.848 -2.169 0.442 -1.895 H301 YR8 58 YR8 H321 H25 H 0 0 N N N N N N -21.553 -14.804 10.280 -0.855 1.979 0.420 H321 YR8 59 YR8 H331 H26 H 0 0 N N N N N N -22.202 -16.001 12.341 1.232 3.186 0.820 H331 YR8 60 YR8 H341 H27 H 0 0 N N N N N N -23.194 -14.832 14.290 3.368 1.974 0.946 H341 YR8 61 YR8 H1 H28 H 0 1 N N N N N N -29.847 -13.547 16.321 10.578 2.168 -0.465 H1 YR8 62 YR8 H2 H30 H 0 1 N N N N N N -22.752 -7.584 10.086 -0.734 -5.399 -0.421 H2 YR8 63 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YR8 O27 S24 DOUB N N 1 YR8 S24 O26 DOUB N N 2 YR8 S24 C25 SING N N 3 YR8 S24 C23 SING N N 4 YR8 C23 C22 SING N N 5 YR8 C22 C21 DOUB Y N 6 YR8 C22 C28 SING Y N 7 YR8 F29 C28 SING N N 8 YR8 C21 C20 SING Y N 9 YR8 C28 C30 DOUB Y N 10 YR8 C20 C19 DOUB Y N 11 YR8 C30 C19 SING Y N 12 YR8 C19 C18 SING N N 13 YR8 O17 C15 DOUB N N 14 YR8 C15 O16 SING N N 15 YR8 C15 C14 SING N N 16 YR8 C18 C14 DOUB Y N 17 YR8 C18 C31 SING Y N 18 YR8 C14 N13 SING Y N 19 YR8 C31 C32 DOUB Y N 20 YR8 C31 C12 SING Y N 21 YR8 C32 C33 SING Y N 22 YR8 N13 C12 SING Y N 23 YR8 C12 C11 DOUB Y N 24 YR8 C33 C34 DOUB Y N 25 YR8 C11 C34 SING Y N 26 YR8 C11 C02 SING N N 27 YR8 C06 C07 SING N N 28 YR8 C06 C05 SING N N 29 YR8 C07 N08 SING N N 30 YR8 C04 C05 SING N N 31 YR8 C04 O03 SING N N 32 YR8 C02 O03 SING N N 33 YR8 C02 C01 SING N N 34 YR8 C05 C10 SING N N 35 YR8 N08 C09 SING N N 36 YR8 C10 C09 SING N N 37 YR8 C20 H201 SING N N 38 YR8 C21 H211 SING N N 39 YR8 C23 H232 SING N N 40 YR8 C23 H231 SING N N 41 YR8 C25 H251 SING N N 42 YR8 C25 H253 SING N N 43 YR8 C25 H252 SING N N 44 YR8 N13 H131 SING N N 45 YR8 C01 H012 SING N N 46 YR8 C01 H013 SING N N 47 YR8 C01 H011 SING N N 48 YR8 C02 H021 SING N N 49 YR8 C04 H041 SING N N 50 YR8 C04 H042 SING N N 51 YR8 C05 H051 SING N N 52 YR8 C06 H061 SING N N 53 YR8 C06 H062 SING N N 54 YR8 C07 H071 SING N N 55 YR8 C07 H072 SING N N 56 YR8 C09 H091 SING N N 57 YR8 C09 H092 SING N N 58 YR8 C10 H101 SING N N 59 YR8 C10 H102 SING N N 60 YR8 C30 H301 SING N N 61 YR8 C32 H321 SING N N 62 YR8 C33 H331 SING N N 63 YR8 C34 H341 SING N N 64 YR8 N08 H1 SING N N 65 YR8 O16 H2 SING N N 66 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YR8 InChI InChI 1.06 "InChI=1S/C25H29FN2O5S/c1-15(33-13-16-8-10-27-11-9-16)19-4-3-5-20-22(24(25(29)30)28-23(19)20)17-6-7-18(21(26)12-17)14-34(2,31)32/h3-7,12,15-16,27-28H,8-11,13-14H2,1-2H3,(H,29,30)/t15-/m0/s1" YR8 InChIKey InChI 1.06 SWCGWGMQDNKNCV-HNNXBMFYSA-N YR8 SMILES_CANONICAL CACTVS 3.385 "C[C@H](OCC1CCNCC1)c2cccc3c2[nH]c(C(O)=O)c3c4ccc(C[S](C)(=O)=O)c(F)c4" YR8 SMILES CACTVS 3.385 "C[CH](OCC1CCNCC1)c2cccc3c2[nH]c(C(O)=O)c3c4ccc(C[S](C)(=O)=O)c(F)c4" YR8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](c1cccc2c1[nH]c(c2c3ccc(c(c3)F)CS(=O)(=O)C)C(=O)O)OCC4CCNCC4" YR8 SMILES "OpenEye OEToolkits" 2.0.7 "CC(c1cccc2c1[nH]c(c2c3ccc(c(c3)F)CS(=O)(=O)C)C(=O)O)OCC4CCNCC4" # _pdbx_chem_comp_identifier.comp_id YR8 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "3-[3-fluoranyl-4-(methylsulfonylmethyl)phenyl]-7-[(1~{S})-1-(piperidin-4-ylmethoxy)ethyl]-1~{H}-indole-2-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YR8 "Create component" 2023-06-20 PDBE YR8 "Initial release" 2024-07-10 RCSB #