data_YRE # _chem_comp.id YRE _chem_comp.name "(7S,10S,13S)-N-cyclopentyl-10-[2-(morpholin-4-yl)ethyl]-9,12-dioxo-13-(2-oxopyrrolidin-1-yl)-2-oxa-8,11-diazabicyclo[13.3.1]nonadeca-1(19),15,17-triene-7-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C32 H47 N5 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-02-16 _chem_comp.pdbx_modified_date 2023-12-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 597.745 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YRE _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8G6E _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YRE C10 C1 C 0 1 N N N N N N 190.434 146.129 152.054 6.444 -2.575 1.750 C10 YRE 1 YRE C11 C2 C 0 1 N N N N N N 190.689 147.400 152.469 4.955 -2.902 1.955 C11 YRE 2 YRE C13 C3 C 0 1 N N S N N N 187.197 148.750 157.735 -1.456 -1.473 1.609 C13 YRE 3 YRE C15 C4 C 0 1 N N N N N N 185.007 148.925 158.974 -1.214 0.864 1.064 C15 YRE 4 YRE C16 C5 C 0 1 N N S N N N 183.954 148.226 159.831 -0.941 2.299 1.435 C16 YRE 5 YRE C17 C6 C 0 1 N N N N N N 183.118 147.207 159.035 -1.499 3.222 0.350 C17 YRE 6 YRE C02 C7 C 0 1 N N N N N N 186.817 148.757 156.263 -0.228 -1.995 0.908 C02 YRE 7 YRE C04 C8 C 0 1 N N S N N N 186.860 149.858 154.024 0.878 -3.358 -0.729 C04 YRE 8 YRE C05 C9 C 0 1 N N N N N N 188.138 149.678 153.229 2.014 -2.491 -0.252 C05 YRE 9 YRE C07 C10 C 0 1 N N N N N N 189.604 148.384 151.690 4.189 -2.208 0.809 C07 YRE 10 YRE C08 C11 C 0 1 N N N N N N 189.367 147.817 150.477 5.249 -2.040 -0.308 C08 YRE 11 YRE C09 C12 C 0 1 N N N N N N 189.695 146.271 150.652 6.532 -1.693 0.487 C09 YRE 12 YRE C18 C13 C 0 1 Y N N N N N 182.073 147.698 158.031 -0.474 3.393 -0.741 C18 YRE 13 YRE C19 C14 C 0 1 Y N N N N N 182.401 148.608 157.042 -0.170 2.334 -1.574 C19 YRE 14 YRE C20 C15 C 0 1 Y N N N N N 181.433 149.035 156.148 0.773 2.492 -2.579 C20 YRE 15 YRE C22 C16 C 0 1 N N N N N N 182.849 150.769 155.441 1.680 0.306 -2.793 C22 YRE 16 YRE C23 C17 C 0 1 N N N N N N 183.860 150.642 154.305 0.973 -0.962 -3.276 C23 YRE 17 YRE C24 C18 C 0 1 N N N N N N 185.054 151.563 154.521 1.729 -2.192 -2.768 C24 YRE 18 YRE C25 C19 C 0 1 N N N N N N 186.242 151.195 153.642 0.729 -3.225 -2.246 C25 YRE 19 YRE C26 C20 C 0 1 Y N N N N N 180.144 148.546 156.241 1.409 3.713 -2.745 C26 YRE 20 YRE C27 C21 C 0 1 Y N N N N N 179.817 147.631 157.226 1.103 4.769 -1.909 C27 YRE 21 YRE C28 C22 C 0 1 Y N N N N N 180.783 147.207 158.122 0.162 4.610 -0.908 C28 YRE 22 YRE C30 C23 C 0 1 N N N N N N 183.638 149.723 162.036 1.074 3.648 1.979 C30 YRE 23 YRE C31 C24 C 0 1 N N N N N N 182.564 150.795 162.450 2.580 3.511 1.971 C31 YRE 24 YRE C32 C25 C 0 1 N N N N N N 182.120 151.215 161.352 2.844 2.273 1.084 C32 YRE 25 YRE C33 C26 C 0 1 N N N N N N 182.163 149.884 160.311 1.516 1.497 1.223 C33 YRE 26 YRE C36 C27 C 0 1 N N N N N N 188.422 147.867 157.910 -2.646 -1.497 0.648 C36 YRE 27 YRE C37 C28 C 0 1 N N N N N N 189.631 148.670 158.366 -3.885 -0.946 1.356 C37 YRE 28 YRE C39 C29 C 0 1 N N N N N N 189.958 147.491 160.167 -5.408 -2.349 0.100 C39 YRE 29 YRE C40 C30 C 0 1 N N N N N N 191.009 146.713 160.950 -6.561 -2.327 -0.907 C40 YRE 30 YRE C42 C31 C 0 1 N N N N N N 192.063 146.189 158.930 -7.316 -0.232 -0.026 C42 YRE 31 YRE C43 C32 C 0 1 N N N N N N 190.951 146.933 158.200 -6.171 -0.233 0.991 C43 YRE 32 YRE N03 N1 N 0 1 N N N N N N 187.212 149.864 155.426 -0.388 -2.918 -0.092 N03 YRE 33 YRE N06 N2 N 0 1 N N N N N N 188.366 148.491 152.432 3.085 -3.051 0.346 N06 YRE 34 YRE N14 N3 N 0 1 N N N N N N 186.153 148.159 158.533 -1.198 -0.084 2.044 N14 YRE 35 YRE N29 N4 N 0 1 N N N N N N 183.216 149.225 160.597 0.504 2.506 1.556 N29 YRE 36 YRE N38 N5 N 0 1 N N N N N N 190.474 147.959 158.982 -5.027 -0.969 0.433 N38 YRE 37 YRE O01 O1 O 0 1 N N N N N N 186.210 147.858 155.799 0.877 -1.607 1.222 O01 YRE 38 YRE O12 O2 O 0 1 N N N N N N 188.960 150.520 153.265 1.966 -1.289 -0.406 O12 YRE 39 YRE O21 O3 O 0 1 N N N N N N 181.755 149.957 155.145 1.074 1.450 -3.398 O21 YRE 40 YRE O34 O4 O 0 1 N N N N N N 184.572 149.359 162.661 0.468 4.641 2.323 O34 YRE 41 YRE O35 O5 O 0 1 N N N N N N 184.902 150.066 158.686 -1.443 0.558 -0.086 O35 YRE 42 YRE O41 O6 O 0 1 N N N N N N 192.195 146.562 160.257 -7.651 -1.581 -0.360 O41 YRE 43 YRE H1 H1 H 0 1 N N N N N N 189.786 145.612 152.778 6.829 -2.031 2.612 H1 YRE 44 YRE H2 H2 H 0 1 N N N N N N 191.373 145.569 151.937 7.012 -3.494 1.605 H2 YRE 45 YRE H3 H3 H 0 1 N N N N N N 191.718 147.686 152.204 4.799 -3.980 1.908 H3 YRE 46 YRE H4 H4 H 0 1 N N N N N N 190.556 147.477 153.558 4.617 -2.517 2.917 H4 YRE 47 YRE H5 H5 H 0 1 N N N N N N 187.421 149.774 158.070 -1.675 -2.094 2.478 H5 YRE 48 YRE H6 H6 H 0 1 N N N N N N 184.519 147.631 160.564 -1.422 2.526 2.387 H6 YRE 49 YRE H7 H7 H 0 1 N N N N N N 182.585 146.588 159.772 -2.405 2.785 -0.068 H7 YRE 50 YRE H8 H8 H 0 1 N N N N N N 183.828 146.581 158.475 -1.732 4.194 0.785 H8 YRE 51 YRE H9 H9 H 0 1 N N N N N N 186.158 149.042 153.797 1.076 -4.398 -0.470 H9 YRE 52 YRE H10 H10 H 0 1 N N N N N N 190.071 149.375 151.588 3.816 -1.236 1.133 H10 YRE 53 YRE H11 H11 H 0 1 N N N N N N 190.019 148.263 149.711 5.377 -2.970 -0.862 H11 YRE 54 YRE H12 H12 H 0 1 N N N N N N 188.315 147.955 150.188 4.978 -1.224 -0.978 H12 YRE 55 YRE H13 H13 H 0 1 N N N N N N 188.766 145.682 150.649 6.540 -0.638 0.758 H13 YRE 56 YRE H14 H14 H 0 1 N N N N N N 190.351 145.926 149.839 7.420 -1.946 -0.093 H14 YRE 57 YRE H15 H15 H 0 1 N N N N N N 183.410 148.985 156.967 -0.667 1.384 -1.444 H15 YRE 58 YRE H16 H16 H 0 1 N N N N N N 183.309 150.444 156.386 1.594 0.379 -1.709 H16 YRE 59 YRE H17 H17 H 0 1 N N N N N N 182.522 151.815 155.533 2.733 0.262 -3.072 H17 YRE 60 YRE H18 H18 H 0 1 N N N N N N 183.369 150.908 153.357 -0.047 -0.978 -2.893 H18 YRE 61 YRE H19 H19 H 0 1 N N N N N N 184.214 149.602 154.255 0.952 -0.974 -4.366 H19 YRE 62 YRE H20 H20 H 0 1 N N N N N N 185.362 151.499 155.575 2.307 -2.626 -3.584 H20 YRE 63 YRE H21 H21 H 0 1 N N N N N N 184.750 152.594 154.289 2.401 -1.898 -1.963 H21 YRE 64 YRE H22 H22 H 0 1 N N N N N N 187.008 151.978 153.739 0.923 -4.189 -2.716 H22 YRE 65 YRE H23 H23 H 0 1 N N N N N N 185.904 151.141 152.597 -0.285 -2.903 -2.484 H23 YRE 66 YRE H24 H24 H 0 1 N N N N N N 179.390 148.879 155.543 2.144 3.838 -3.526 H24 YRE 67 YRE H25 H25 H 0 1 N N N N N N 178.810 147.248 157.296 1.598 5.720 -2.037 H25 YRE 68 YRE H26 H26 H 0 1 N N N N N N 180.530 146.493 158.892 -0.076 5.436 -0.255 H26 YRE 69 YRE H27 H27 H 0 1 N N N N N N 183.027 151.612 163.024 3.041 4.398 1.535 H27 YRE 70 YRE H28 H28 H 0 1 N N N N N N 181.762 150.336 163.047 2.954 3.346 2.981 H28 YRE 71 YRE H29 H29 H 0 1 N N N N N N 182.754 152.026 160.966 3.018 2.565 0.048 H29 YRE 72 YRE H30 H30 H 0 1 N N N N N N 181.089 151.579 161.468 3.680 1.689 1.468 H30 YRE 73 YRE H31 H31 H 0 1 N N N N N N 182.201 150.223 159.265 1.261 1.003 0.286 H31 YRE 74 YRE H32 H32 H 0 1 N N N N N N 181.272 149.257 160.461 1.597 0.764 2.026 H32 YRE 75 YRE H33 H33 H 0 1 N N N N N N 188.201 147.096 158.663 -2.421 -0.882 -0.224 H33 YRE 76 YRE H34 H34 H 0 1 N N N N N N 188.655 147.386 156.949 -2.835 -2.523 0.330 H34 YRE 77 YRE H35 H35 H 0 1 N N N N N N 190.117 149.110 157.483 -4.109 -1.561 2.227 H35 YRE 78 YRE H36 H36 H 0 1 N N N N N N 189.290 149.474 159.035 -3.695 0.080 1.674 H36 YRE 79 YRE H37 H37 H 0 1 N N N N N N 189.616 148.344 160.772 -5.726 -2.867 1.005 H37 YRE 80 YRE H38 H38 H 0 1 N N N N N N 189.106 146.829 159.952 -4.554 -2.868 -0.335 H38 YRE 81 YRE H39 H39 H 0 1 N N N N N N 191.216 147.250 161.888 -6.226 -1.857 -1.832 H39 YRE 82 YRE H40 H40 H 0 1 N N N N N N 190.608 145.715 161.180 -6.884 -3.347 -1.114 H40 YRE 83 YRE H41 H41 H 0 1 N N N N N N 191.846 145.111 158.891 -8.186 0.263 0.406 H41 YRE 84 YRE H42 H42 H 0 1 N N N N N N 193.014 146.390 158.415 -7.004 0.299 -0.925 H42 YRE 85 YRE H43 H43 H 0 1 N N N N N N 191.346 147.346 157.260 -5.874 0.793 1.206 H43 YRE 86 YRE H44 H44 H 0 1 N N N N N N 190.131 146.234 157.978 -6.501 -0.717 1.910 H44 YRE 87 YRE H45 H45 H 0 1 N N N N N N 187.726 150.630 155.813 -1.257 -3.255 -0.362 H45 YRE 88 YRE H46 H46 H 0 1 N N N N N N 187.683 147.761 152.395 3.124 -4.012 0.469 H46 YRE 89 YRE H47 H47 H 0 1 N N N N N N 186.222 147.195 158.789 -1.027 0.140 2.972 H47 YRE 90 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YRE C08 C09 SING N N 1 YRE C08 C07 SING N N 2 YRE C09 C10 SING N N 3 YRE C07 N06 SING N N 4 YRE C07 C11 SING N N 5 YRE C10 C11 SING N N 6 YRE N06 C05 SING N N 7 YRE C05 O12 DOUB N N 8 YRE C05 C04 SING N N 9 YRE C25 C04 SING N N 10 YRE C25 C24 SING N N 11 YRE C04 N03 SING N N 12 YRE C23 C24 SING N N 13 YRE C23 C22 SING N N 14 YRE O21 C22 SING N N 15 YRE O21 C20 SING N N 16 YRE N03 C02 SING N N 17 YRE O01 C02 DOUB N N 18 YRE C20 C26 DOUB Y N 19 YRE C20 C19 SING Y N 20 YRE C26 C27 SING Y N 21 YRE C02 C13 SING N N 22 YRE C19 C18 DOUB Y N 23 YRE C27 C28 DOUB Y N 24 YRE C13 C36 SING N N 25 YRE C13 N14 SING N N 26 YRE C36 C37 SING N N 27 YRE C18 C28 SING Y N 28 YRE C18 C17 SING N N 29 YRE C43 C42 SING N N 30 YRE C43 N38 SING N N 31 YRE C37 N38 SING N N 32 YRE N14 C15 SING N N 33 YRE O35 C15 DOUB N N 34 YRE C42 O41 SING N N 35 YRE C15 C16 SING N N 36 YRE N38 C39 SING N N 37 YRE C17 C16 SING N N 38 YRE C16 N29 SING N N 39 YRE C39 C40 SING N N 40 YRE O41 C40 SING N N 41 YRE C33 N29 SING N N 42 YRE C33 C32 SING N N 43 YRE N29 C30 SING N N 44 YRE C32 C31 SING N N 45 YRE C30 C31 SING N N 46 YRE C30 O34 DOUB N N 47 YRE C10 H1 SING N N 48 YRE C10 H2 SING N N 49 YRE C11 H3 SING N N 50 YRE C11 H4 SING N N 51 YRE C13 H5 SING N N 52 YRE C16 H6 SING N N 53 YRE C17 H7 SING N N 54 YRE C17 H8 SING N N 55 YRE C04 H9 SING N N 56 YRE C07 H10 SING N N 57 YRE C08 H11 SING N N 58 YRE C08 H12 SING N N 59 YRE C09 H13 SING N N 60 YRE C09 H14 SING N N 61 YRE C19 H15 SING N N 62 YRE C22 H16 SING N N 63 YRE C22 H17 SING N N 64 YRE C23 H18 SING N N 65 YRE C23 H19 SING N N 66 YRE C24 H20 SING N N 67 YRE C24 H21 SING N N 68 YRE C25 H22 SING N N 69 YRE C25 H23 SING N N 70 YRE C26 H24 SING N N 71 YRE C27 H25 SING N N 72 YRE C28 H26 SING N N 73 YRE C31 H27 SING N N 74 YRE C31 H28 SING N N 75 YRE C32 H29 SING N N 76 YRE C32 H30 SING N N 77 YRE C33 H31 SING N N 78 YRE C33 H32 SING N N 79 YRE C36 H33 SING N N 80 YRE C36 H34 SING N N 81 YRE C37 H35 SING N N 82 YRE C37 H36 SING N N 83 YRE C39 H37 SING N N 84 YRE C39 H38 SING N N 85 YRE C40 H39 SING N N 86 YRE C40 H40 SING N N 87 YRE C42 H41 SING N N 88 YRE C42 H42 SING N N 89 YRE C43 H43 SING N N 90 YRE C43 H44 SING N N 91 YRE N03 H45 SING N N 92 YRE N06 H46 SING N N 93 YRE N14 H47 SING N N 94 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YRE SMILES ACDLabs 12.01 "O=C1CCCN1C1Cc2cccc(OCCCCC(NC(=O)C(CCN3CCOCC3)NC1=O)C(=O)NC1CCCC1)c2" YRE InChI InChI 1.06 "InChI=1S/C32H47N5O6/c38-29-12-6-14-37(29)28-22-23-7-5-10-25(21-23)43-18-4-3-11-26(30(39)33-24-8-1-2-9-24)34-31(40)27(35-32(28)41)13-15-36-16-19-42-20-17-36/h5,7,10,21,24,26-28H,1-4,6,8-9,11-20,22H2,(H,33,39)(H,34,40)(H,35,41)/t26-,27-,28-/m0/s1" YRE InChIKey InChI 1.06 UGEFECOTMZPOER-KCHLEUMXSA-N YRE SMILES_CANONICAL CACTVS 3.385 "O=C1CCCN1[C@H]2Cc3cccc(OCCCC[C@H](NC(=O)[C@H](CCN4CCOCC4)NC2=O)C(=O)NC5CCCC5)c3" YRE SMILES CACTVS 3.385 "O=C1CCCN1[CH]2Cc3cccc(OCCCC[CH](NC(=O)[CH](CCN4CCOCC4)NC2=O)C(=O)NC5CCCC5)c3" YRE SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc2cc(c1)OCCCC[C@H](NC(=O)[C@@H](NC(=O)[C@H](C2)N3CCCC3=O)CCN4CCOCC4)C(=O)NC5CCCC5" YRE SMILES "OpenEye OEToolkits" 2.0.7 "c1cc2cc(c1)OCCCCC(NC(=O)C(NC(=O)C(C2)N3CCCC3=O)CCN4CCOCC4)C(=O)NC5CCCC5" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YRE "SYSTEMATIC NAME" ACDLabs 12.01 "(7S,10S,13S)-N-cyclopentyl-10-[2-(morpholin-4-yl)ethyl]-9,12-dioxo-13-(2-oxopyrrolidin-1-yl)-2-oxa-8,11-diazabicyclo[13.3.1]nonadeca-1(19),15,17-triene-7-carboxamide" YRE "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(7~{S},10~{S},13~{S})-~{N}-cyclopentyl-10-(2-morpholin-4-ylethyl)-9,12-bis(oxidanylidene)-13-(2-oxidanylidenepyrrolidin-1-yl)-2-oxa-8,11-diazabicyclo[13.3.1]nonadeca-1(18),15(19),16-triene-7-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YRE "Create component" 2023-02-16 RCSB YRE "Initial release" 2023-12-20 RCSB #