data_YRF # _chem_comp.id YRF _chem_comp.name "7-[(1~{S})-1-[5-[(3-azanylazetidin-1-yl)methyl]-2-oxidanylidene-1,3-oxazolidin-3-yl]ethyl]-3-[3-fluoranyl-4-(methylsulfonylamino)phenyl]-1~{H}-indole-2-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H28 F N5 O6 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-20 _chem_comp.pdbx_modified_date 2024-07-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 545.583 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YRF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8PGN _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YRF C10 C1 C 0 1 Y N N N N N -21.705 -11.898 9.881 -0.966 1.119 0.591 C10 YRF 1 YRF C11 C2 C 0 1 Y N N N N N -21.141 -12.047 8.501 -2.383 0.768 0.358 C11 YRF 2 YRF C12 C3 C 0 1 Y N N N N N -20.299 -10.998 8.092 -3.339 1.024 1.344 C12 YRF 3 YRF C13 C4 C 0 1 Y N N N N N -19.795 -10.893 6.851 -4.660 0.695 1.123 C13 YRF 4 YRF C15 C5 C 0 1 Y N N N N N -20.013 -11.986 6.047 -5.040 0.108 -0.081 C15 YRF 5 YRF C18 C6 C 0 1 N N N N N N -20.799 -9.662 3.606 -6.003 -2.947 -0.222 C18 YRF 6 YRF C01 C7 C 0 1 N N N N N N -22.803 -12.447 15.718 4.232 4.195 0.038 C01 YRF 7 YRF C02 C8 C 0 1 N N S N N N -23.375 -12.013 14.405 3.474 2.952 0.510 C02 YRF 8 YRF C03 C9 C 0 1 Y N N N N N -22.749 -12.845 13.240 2.088 2.954 -0.081 C03 YRF 9 YRF C04 C10 C 0 1 Y N N N N N -22.412 -12.185 12.029 1.112 2.098 0.424 C04 YRF 10 YRF C06 C11 C 0 1 Y N N N N N -22.180 -10.711 10.416 -0.121 0.568 1.540 C06 YRF 11 YRF C07 C12 C 0 1 N N N N N N -22.416 -9.390 9.777 -0.485 -0.473 2.501 C07 YRF 12 YRF C21 C13 C 0 1 Y N N N N N -20.808 -13.109 6.409 -4.090 -0.148 -1.063 C21 YRF 13 YRF C22 C14 C 0 1 Y N N N N N -21.393 -13.133 7.739 -2.770 0.184 -0.850 C22 YRF 14 YRF C23 C15 C 0 1 Y N N N N N -21.844 -12.847 10.900 -0.176 2.115 -0.142 C23 YRF 15 YRF C24 C16 C 0 1 Y N N N N N -21.597 -14.209 10.997 -0.463 2.985 -1.196 C24 YRF 16 YRF C25 C17 C 0 1 Y N N N N N -21.939 -14.883 12.153 0.510 3.816 -1.675 C25 YRF 17 YRF C26 C18 C 0 1 Y N N N N N -22.483 -14.194 13.270 1.783 3.803 -1.122 C26 YRF 18 YRF C28 C19 C 0 1 N N N N N N -25.716 -13.098 15.023 4.698 0.689 0.957 C28 YRF 19 YRF C29 C20 C 0 1 N N N N N N -26.969 -12.851 14.413 5.354 -0.316 -0.010 C29 YRF 20 YRF C30 C21 C 0 1 N N N N N N -28.336 -13.431 14.554 4.662 -1.677 0.080 C30 YRF 21 YRF C32 C22 C 0 1 N N N N N N -29.765 -15.005 15.638 4.610 -3.905 -0.888 C32 YRF 22 YRF C33 C23 C 0 1 N N N N N N -29.877 -14.225 16.871 5.957 -4.626 -0.695 C33 YRF 23 YRF C35 C24 C 0 1 N N N N N N -28.474 -13.725 16.732 6.429 -3.344 0.015 C35 YRF 24 YRF C37 C25 C 0 1 N N N N N N -25.575 -11.406 13.385 4.485 1.436 -1.196 C37 YRF 25 YRF F14 F1 F 0 1 N N N N N N -19.039 -9.773 6.514 -5.585 0.942 2.076 F14 YRF 26 YRF N05 N1 N 0 1 Y N N N N N -22.545 -10.876 11.692 1.122 1.162 1.431 N05 YRF 27 YRF N16 N2 N 0 1 N N N N N N -19.468 -11.939 4.711 -6.377 -0.229 -0.300 N16 YRF 28 YRF N27 N3 N 0 1 N N N N N N -24.840 -12.164 14.352 4.189 1.750 0.073 N27 YRF 29 YRF N31 N4 N 0 1 N N N N N N -28.358 -14.483 15.474 5.378 -2.647 -0.759 N31 YRF 30 YRF N34 N5 N 0 1 N N N N N N -30.815 -13.132 16.719 5.879 -5.798 0.187 N34 YRF 31 YRF O08 O1 O 0 1 N N N N N N -22.335 -8.336 10.481 0.431 -0.931 3.380 O08 YRF 32 YRF O09 O2 O 0 1 N N N N N N -22.864 -9.362 8.633 -1.614 -0.927 2.507 O09 YRF 33 YRF O19 O3 O 0 1 N N N N N N -19.872 -11.529 2.158 -6.089 -1.416 -2.405 O19 YRF 34 YRF O20 O4 O 0 1 N N N N N N -21.706 -12.263 3.460 -8.174 -1.665 -1.096 O20 YRF 35 YRF O36 O5 O 0 1 N N N N N N -26.909 -11.847 13.516 5.147 0.275 -1.326 O36 YRF 36 YRF O38 O6 O 0 1 N N N N N N -25.224 -10.524 12.720 4.182 2.137 -2.141 O38 YRF 37 YRF S17 S1 S 0 1 N N N N N N -20.476 -11.413 3.412 -6.756 -1.591 -1.163 S17 YRF 38 YRF H121 H1 H 0 0 N N N N N N -20.044 -10.236 8.814 -3.044 1.479 2.278 H121 YRF 39 YRF H183 H2 H 0 0 N N N N N N -21.280 -9.483 4.579 -4.926 -2.792 -0.160 H183 YRF 40 YRF H182 H3 H 0 0 N N N N N N -19.851 -9.107 3.558 -6.425 -2.971 0.782 H182 YRF 41 YRF H181 H4 H 0 0 N N N N N N -21.465 -9.321 2.800 -6.205 -3.894 -0.724 H181 YRF 42 YRF H011 H5 H 0 0 N N N N N N -23.252 -11.854 16.528 4.301 4.187 -1.050 H011 YRF 43 YRF H012 H6 H 0 0 N N N N N N -23.023 -13.513 15.879 3.701 5.089 0.363 H012 YRF 44 YRF H013 H7 H 0 0 N N N N N N -21.714 -12.294 15.712 5.235 4.193 0.465 H013 YRF 45 YRF H021 H8 H 0 0 N N N N N N -23.118 -10.956 14.241 3.406 2.959 1.597 H021 YRF 46 YRF H211 H9 H 0 0 N N N N N N -20.972 -13.920 5.715 -4.388 -0.604 -1.996 H211 YRF 47 YRF H221 H10 H 0 0 N N N N N N -21.988 -13.962 8.093 -2.033 -0.015 -1.614 H221 YRF 48 YRF H241 H11 H 0 0 N N N N N N -21.140 -14.739 10.174 -1.451 3.000 -1.632 H241 YRF 49 YRF H251 H12 H 0 0 N N N N N N -21.790 -15.951 12.209 0.287 4.488 -2.491 H251 YRF 50 YRF H261 H13 H 0 0 N N N N N N -22.695 -14.748 14.173 2.542 4.466 -1.510 H261 YRF 51 YRF H281 H14 H 0 0 N N N N N N -25.392 -14.136 14.855 3.879 0.218 1.501 H281 YRF 52 YRF H1 H15 H 0 1 N N N N N N -25.756 -12.897 16.104 5.437 1.090 1.651 H1 YRF 53 YRF H2 H16 H 0 1 N N N N N N -26.735 -13.580 13.623 6.418 -0.414 0.204 H2 YRF 54 YRF H301 H17 H 0 0 N N N N N N -29.024 -12.644 14.896 4.667 -2.019 1.115 H301 YRF 55 YRF H302 H18 H 0 0 N N N N N N -28.667 -13.807 13.575 3.633 -1.586 -0.267 H302 YRF 56 YRF H321 H19 H 0 0 N N N N N N -30.459 -14.697 14.842 4.171 -4.053 -1.874 H321 YRF 57 YRF H322 H20 H 0 0 N N N N N N -29.831 -16.094 15.782 3.901 -4.075 -0.077 H322 YRF 58 YRF H331 H21 H 0 0 N N N N N N -30.036 -14.835 17.773 6.483 -4.830 -1.628 H331 YRF 59 YRF H351 H22 H 0 0 N N N N N N -27.792 -14.060 17.528 6.253 -3.348 1.091 H351 YRF 60 YRF H352 H23 H 0 0 N N N N N N -28.391 -12.635 16.613 7.443 -3.044 -0.249 H352 YRF 61 YRF H051 H24 H 0 0 N N N N N N -22.865 -10.151 12.301 1.889 0.949 1.985 H051 YRF 62 YRF H161 H25 H 0 0 N N N N N N -19.161 -12.864 4.487 -7.083 0.334 0.053 H161 YRF 63 YRF H341 H27 H 0 0 N N N N N N -30.870 -12.618 17.575 6.782 -6.238 0.284 H341 YRF 64 YRF H4 H28 H 0 1 N N N N N N -30.505 -12.526 15.986 5.499 -5.549 1.088 H4 YRF 65 YRF H5 H30 H 0 1 N N N N N N -22.662 -7.596 9.983 0.098 -1.617 3.974 H5 YRF 66 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YRF O19 S17 DOUB N N 1 YRF S17 O20 DOUB N N 2 YRF S17 C18 SING N N 3 YRF S17 N16 SING N N 4 YRF N16 C15 SING N N 5 YRF C15 C21 DOUB Y N 6 YRF C15 C13 SING Y N 7 YRF C21 C22 SING Y N 8 YRF F14 C13 SING N N 9 YRF C13 C12 DOUB Y N 10 YRF C22 C11 DOUB Y N 11 YRF C12 C11 SING Y N 12 YRF C11 C10 SING N N 13 YRF O09 C07 DOUB N N 14 YRF C07 C06 SING N N 15 YRF C07 O08 SING N N 16 YRF C10 C06 DOUB Y N 17 YRF C10 C23 SING Y N 18 YRF C06 N05 SING Y N 19 YRF C23 C24 DOUB Y N 20 YRF C23 C04 SING Y N 21 YRF C24 C25 SING Y N 22 YRF N05 C04 SING Y N 23 YRF C04 C03 DOUB Y N 24 YRF C25 C26 DOUB Y N 25 YRF O38 C37 DOUB N N 26 YRF C03 C26 SING Y N 27 YRF C03 C02 SING N N 28 YRF C37 O36 SING N N 29 YRF C37 N27 SING N N 30 YRF O36 C29 SING N N 31 YRF N27 C02 SING N N 32 YRF N27 C28 SING N N 33 YRF C02 C01 SING N N 34 YRF C29 C30 SING N N 35 YRF C29 C28 SING N N 36 YRF C30 N31 SING N N 37 YRF N31 C32 SING N N 38 YRF N31 C35 SING N N 39 YRF C32 C33 SING N N 40 YRF N34 C33 SING N N 41 YRF C35 C33 SING N N 42 YRF C12 H121 SING N N 43 YRF C18 H183 SING N N 44 YRF C18 H182 SING N N 45 YRF C18 H181 SING N N 46 YRF C01 H011 SING N N 47 YRF C01 H012 SING N N 48 YRF C01 H013 SING N N 49 YRF C02 H021 SING N N 50 YRF C21 H211 SING N N 51 YRF C22 H221 SING N N 52 YRF C24 H241 SING N N 53 YRF C25 H251 SING N N 54 YRF C26 H261 SING N N 55 YRF C28 H281 SING N N 56 YRF C28 H1 SING N N 57 YRF C29 H2 SING N N 58 YRF C30 H301 SING N N 59 YRF C30 H302 SING N N 60 YRF C32 H321 SING N N 61 YRF C32 H322 SING N N 62 YRF C33 H331 SING N N 63 YRF C35 H351 SING N N 64 YRF C35 H352 SING N N 65 YRF N05 H051 SING N N 66 YRF N16 H161 SING N N 67 YRF N34 H341 SING N N 68 YRF N34 H4 SING N N 69 YRF O08 H5 SING N N 70 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YRF InChI InChI 1.06 "InChI=1S/C25H28FN5O6S/c1-13(31-12-16(37-25(31)34)11-30-9-15(27)10-30)17-4-3-5-18-21(23(24(32)33)28-22(17)18)14-6-7-20(19(26)8-14)29-38(2,35)36/h3-8,13,15-16,28-29H,9-12,27H2,1-2H3,(H,32,33)/t13-,16?/m0/s1" YRF InChIKey InChI 1.06 LRAMOIQYSFJRDT-KNVGNIICSA-N YRF SMILES_CANONICAL CACTVS 3.385 "C[C@H](N1C[C@@H](CN2CC(N)C2)OC1=O)c3cccc4c3[nH]c(C(O)=O)c4c5ccc(N[S](C)(=O)=O)c(F)c5" YRF SMILES CACTVS 3.385 "C[CH](N1C[CH](CN2CC(N)C2)OC1=O)c3cccc4c3[nH]c(C(O)=O)c4c5ccc(N[S](C)(=O)=O)c(F)c5" YRF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](c1cccc2c1[nH]c(c2c3ccc(c(c3)F)NS(=O)(=O)C)C(=O)O)N4CC(OC4=O)CN5CC(C5)N" YRF SMILES "OpenEye OEToolkits" 2.0.7 "CC(c1cccc2c1[nH]c(c2c3ccc(c(c3)F)NS(=O)(=O)C)C(=O)O)N4CC(OC4=O)CN5CC(C5)N" # _pdbx_chem_comp_identifier.comp_id YRF _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "7-[(1~{S})-1-[5-[(3-azanylazetidin-1-yl)methyl]-2-oxidanylidene-1,3-oxazolidin-3-yl]ethyl]-3-[3-fluoranyl-4-(methylsulfonylamino)phenyl]-1~{H}-indole-2-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YRF "Create component" 2023-06-20 PDBE YRF "Initial release" 2024-07-10 RCSB #