data_YRH # _chem_comp.id YRH _chem_comp.name "~{N}-(5-oxidanylidene-4~{H}-[1,2]dithiolo[4,3-b]pyrrol-6-yl)hexanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H14 N2 O2 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-12-12 _chem_comp.pdbx_modified_date 2024-10-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 270.371 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YRH _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8RDN _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YRH C4 C1 C 0 1 N N N N N N 34.672 70.348 42.445 -3.103 0.092 0.061 C4 YRH 1 YRH C6 C2 C 0 1 N N N N N N 36.088 70.341 40.816 -2.281 2.195 0.038 C6 YRH 2 YRH C8 C3 C 0 1 N N N N N N 34.954 70.807 40.302 -1.203 1.330 -0.046 C8 YRH 3 YRH C10 C4 C 0 1 N N N N N N 34.269 72.341 38.693 1.116 0.747 -0.085 C10 YRH 4 YRH C13 C5 C 0 1 N N N N N N 33.732 74.697 35.874 4.916 0.289 0.022 C13 YRH 5 YRH C15 C6 C 0 1 N N N N N N 33.837 76.290 33.905 7.263 -0.565 0.103 C15 YRH 6 YRH C17 C7 C 0 1 N N N N N N 34.055 70.808 41.293 -1.715 0.020 -0.030 C17 YRH 7 YRH O7 O1 O 0 1 N N N N N N 37.148 70.189 40.208 -2.210 3.417 0.052 O7 YRH 8 YRH N5 N1 N 0 1 N N N N N N 35.932 70.067 42.102 -3.411 1.484 0.104 N5 YRH 9 YRH C3 C8 C 0 1 N N N N N N 33.978 70.259 43.624 -3.891 -1.011 0.098 C3 YRH 10 YRH S2 S1 S 0 1 N N N N N N 32.340 70.739 43.576 -3.045 -2.494 0.025 S2 YRH 11 YRH S1 S2 S 0 1 N N N N N N 32.402 71.235 41.528 -1.156 -1.659 -0.087 S1 YRH 12 YRH N9 N2 N 0 1 N N N N N N 34.739 71.132 39.024 0.159 1.695 -0.133 N9 YRH 13 YRH O16 O2 O 0 1 N N N N N N 34.065 73.248 39.497 0.807 -0.427 -0.063 O16 YRH 14 YRH C11 C9 C 0 1 N N N N N N 34.020 72.569 37.195 2.570 1.143 -0.058 C11 YRH 15 YRH C12 C10 C 0 1 N N N N N N 34.676 73.867 36.758 3.440 -0.114 -0.005 C12 YRH 16 YRH C14 C11 C 0 1 N N N N N N 34.547 75.764 35.146 5.787 -0.968 0.076 C14 YRH 17 YRH H2 H2 H 0 1 N N N N N N 32.968 75.180 36.501 5.154 0.858 -0.877 H2 YRH 18 YRH H3 H3 H 0 1 N N N N N N 33.242 74.041 35.139 5.109 0.903 0.902 H3 YRH 19 YRH H4 H4 H 0 1 N N N N N N 34.463 77.053 33.419 7.501 0.004 -0.796 H4 YRH 20 YRH H5 H5 H 0 1 N N N N N N 33.660 75.460 33.205 7.456 0.049 0.983 H5 YRH 21 YRH H6 H6 H 0 1 N N N N N N 32.874 76.736 34.195 7.883 -1.460 0.141 H6 YRH 22 YRH H7 H7 H 0 1 N N N N N N 36.638 69.710 42.713 -4.304 1.857 0.169 H7 YRH 23 YRH H8 H8 H 0 1 N N N N N N 34.442 69.905 44.533 -4.967 -0.957 0.169 H8 YRH 24 YRH H9 H9 H 0 1 N N N N N N 34.932 70.464 38.306 0.406 2.629 -0.228 H9 YRH 25 YRH H10 H10 H 0 1 N N N N N N 32.937 72.626 37.009 2.807 1.712 -0.957 H10 YRH 26 YRH H11 H11 H 0 1 N N N N N N 34.447 71.733 36.622 2.763 1.757 0.821 H11 YRH 27 YRH H12 H12 H 0 1 N N N N N N 35.588 73.634 36.189 3.247 -0.727 -0.885 H12 YRH 28 YRH H13 H13 H 0 1 N N N N N N 34.940 74.454 37.650 3.203 -0.682 0.894 H13 YRH 29 YRH H14 H14 H 0 1 N N N N N N 35.510 75.328 34.844 5.549 -1.536 0.975 H14 YRH 30 YRH H15 H15 H 0 1 N N N N N N 34.725 76.604 35.834 5.594 -1.581 -0.804 H15 YRH 31 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YRH C15 C14 SING N N 1 YRH C14 C13 SING N N 2 YRH C13 C12 SING N N 3 YRH C12 C11 SING N N 4 YRH C11 C10 SING N N 5 YRH C10 N9 SING N N 6 YRH C10 O16 DOUB N N 7 YRH N9 C8 SING N N 8 YRH O7 C6 DOUB N N 9 YRH C8 C6 SING N N 10 YRH C8 C17 DOUB N N 11 YRH C6 N5 SING N N 12 YRH C17 S1 SING N N 13 YRH C17 C4 SING N N 14 YRH S1 S2 SING N N 15 YRH N5 C4 SING N N 16 YRH C4 C3 DOUB N N 17 YRH S2 C3 SING N N 18 YRH C13 H2 SING N N 19 YRH C13 H3 SING N N 20 YRH C15 H4 SING N N 21 YRH C15 H5 SING N N 22 YRH C15 H6 SING N N 23 YRH N5 H7 SING N N 24 YRH C3 H8 SING N N 25 YRH N9 H9 SING N N 26 YRH C11 H10 SING N N 27 YRH C11 H11 SING N N 28 YRH C12 H12 SING N N 29 YRH C12 H13 SING N N 30 YRH C14 H14 SING N N 31 YRH C14 H15 SING N N 32 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YRH InChI InChI 1.06 "InChI=1S/C11H14N2O2S2/c1-2-3-4-5-8(14)13-9-10-7(6-16-17-10)12-11(9)15/h6H,2-5H2,1H3,(H,12,15)(H,13,14)" YRH InChIKey InChI 1.06 YBDAGRFUBLIKGW-UHFFFAOYSA-N YRH SMILES_CANONICAL CACTVS 3.385 "CCCCCC(=O)NC1=C2SSC=C2NC1=O" YRH SMILES CACTVS 3.385 "CCCCCC(=O)NC1=C2SSC=C2NC1=O" YRH SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCC(=O)NC1=C2C(=CSS2)NC1=O" YRH SMILES "OpenEye OEToolkits" 2.0.7 "CCCCCC(=O)NC1=C2C(=CSS2)NC1=O" # _pdbx_chem_comp_identifier.comp_id YRH _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-(5-oxidanylidene-4~{H}-[1,2]dithiolo[4,3-b]pyrrol-6-yl)hexanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YRH "Create component" 2023-12-12 PDBE YRH "Initial release" 2024-10-16 RCSB #