data_YRP # _chem_comp.id YRP _chem_comp.name "(2R)-N-(4-chlorophenyl)-2-[(1R,3S,5S,6r)-3-(5,6-difluoro-1H-benzimidazol-1-yl)bicyclo[3.1.0]hexan-6-yl]propanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H20 Cl F2 N3 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-03-29 _chem_comp.pdbx_modified_date 2021-08-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 415.864 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YRP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7M63 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YRP C14 C1 C 0 1 Y N N 18.307 4.514 -13.700 -4.041 -1.373 0.445 C14 YRP 1 YRP C11 C2 C 0 1 Y N N 18.568 2.815 -11.955 -5.747 0.029 -0.543 C11 YRP 2 YRP C10 C3 C 0 1 Y N N 19.124 3.770 -12.874 -4.420 -0.165 -0.124 C10 YRP 3 YRP C13 C4 C 0 1 Y N N 20.752 2.762 -11.706 -4.657 1.860 -0.974 C13 YRP 4 YRP C01 C5 C 0 1 N N N 22.497 3.926 -14.473 -2.186 2.506 0.799 C01 YRP 5 YRP C02 C6 C 0 1 N N N 21.512 4.554 -13.451 -2.340 1.294 -0.154 C02 YRP 6 YRP C03 C7 C 0 1 N N N 22.531 5.306 -12.558 -1.635 1.782 -1.444 C03 YRP 7 YRP C04 C8 C 0 1 N N S 23.431 5.950 -13.636 -0.424 2.589 -0.931 C04 YRP 8 YRP C05 C9 C 0 1 N N R 23.345 5.153 -14.848 -0.775 3.049 0.494 C05 YRP 9 YRP C06 C10 C 0 1 N N N 23.066 6.640 -14.940 0.371 2.028 0.249 C06 YRP 10 YRP C07 C11 C 0 1 N N R 24.137 7.478 -15.767 1.807 2.519 0.442 C07 YRP 11 YRP C08 C12 C 0 1 N N N 25.056 6.509 -16.622 2.766 1.391 0.160 C08 YRP 12 YRP C15 C13 C 0 1 Y N N 16.955 4.340 -13.643 -4.970 -2.382 0.597 C15 YRP 13 YRP C16 C14 C 0 1 Y N N 16.354 3.396 -12.738 -6.286 -2.195 0.183 C16 YRP 14 YRP C17 C15 C 0 1 Y N N 17.169 2.648 -11.908 -6.677 -1.002 -0.383 C17 YRP 15 YRP C22 C16 C 0 1 Y N N 27.268 5.184 -17.015 4.981 0.523 0.100 C22 YRP 16 YRP C23 C17 C 0 1 Y N N 27.091 4.822 -18.384 4.698 -0.477 -0.822 C23 YRP 17 YRP C24 C18 C 0 1 Y N N 27.944 3.949 -19.067 5.577 -1.529 -0.989 C24 YRP 18 YRP C25 C19 C 0 1 Y N N 29.025 3.390 -18.400 6.739 -1.588 -0.239 C25 YRP 19 YRP C26 C20 C 0 1 Y N N 29.247 3.702 -17.072 7.022 -0.593 0.680 C26 YRP 20 YRP C27 C21 C 0 1 Y N N 28.385 4.576 -16.401 6.147 0.461 0.851 C27 YRP 21 YRP C29 C22 C 0 1 N N N 25.009 8.352 -14.852 1.993 2.997 1.883 C29 YRP 22 YRP F18 F1 F 0 1 N N N 16.122 5.041 -14.429 -4.601 -3.557 1.151 F18 YRP 23 YRP F19 F2 F 0 1 N N N 15.030 3.295 -12.753 -7.185 -3.191 0.338 F19 YRP 24 YRP N09 N1 N 0 1 Y N N 20.550 3.735 -12.718 -3.755 1.012 -0.410 N09 YRP 25 YRP N12 N2 N 0 1 Y N N 19.635 2.205 -11.241 -5.822 1.286 -1.052 N12 YRP 26 YRP N21 N3 N 0 1 N N N 26.393 6.089 -16.267 4.094 1.593 0.267 N21 YRP 27 YRP O20 O1 O 0 1 N N N 24.549 6.100 -17.619 2.342 0.302 -0.164 O20 YRP 28 YRP CL28 CL1 CL 0 0 N N N 30.120 2.286 -19.232 7.841 -2.912 -0.451 CL28 YRP 29 YRP H1 H1 H 0 1 N N N 18.735 5.229 -14.387 -3.020 -1.525 0.763 H1 YRP 30 YRP H2 H2 H 0 1 N N N 21.733 2.494 -11.342 -4.438 2.863 -1.309 H2 YRP 31 YRP H3 H3 H 0 1 N N N 21.968 3.517 -15.347 -2.941 3.261 0.580 H3 YRP 32 YRP H4 H4 H 0 1 N N N 23.109 3.136 -14.013 -2.258 2.186 1.838 H4 YRP 33 YRP H5 H5 H 0 1 N N N 20.946 5.324 -13.996 -1.840 0.416 0.255 H5 YRP 34 YRP H6 H6 H 0 1 N N N 23.097 4.614 -11.917 -1.302 0.933 -2.041 H6 YRP 35 YRP H7 H7 H 0 1 N N N 22.039 6.066 -11.933 -2.302 2.418 -2.026 H7 YRP 36 YRP H8 H8 H 0 1 N N N 24.452 6.163 -13.287 0.069 3.257 -1.638 H8 YRP 37 YRP H9 H9 H 0 1 N N N 24.323 4.876 -15.268 -0.540 4.057 0.839 H9 YRP 38 YRP H10 H10 H 0 1 N N N 22.017 6.947 -15.067 0.188 0.990 0.528 H10 YRP 39 YRP H11 H11 H 0 1 N N N 23.592 8.133 -16.463 2.004 3.344 -0.243 H11 YRP 40 YRP H12 H12 H 0 1 N N N 16.733 1.935 -11.223 -7.700 -0.863 -0.701 H12 YRP 41 YRP H13 H13 H 0 1 N N N 26.254 5.244 -18.921 3.792 -0.431 -1.408 H13 YRP 42 YRP H14 H14 H 0 1 N N N 27.763 3.712 -20.105 5.358 -2.306 -1.706 H14 YRP 43 YRP H15 H15 H 0 1 N N N 30.088 3.270 -16.551 7.929 -0.642 1.265 H15 YRP 44 YRP H16 H16 H 0 1 N N N 28.584 4.797 -15.363 6.370 1.239 1.566 H16 YRP 45 YRP H17 H17 H 0 1 N N N 24.366 9.022 -14.262 3.016 3.347 2.021 H17 YRP 46 YRP H18 H18 H 0 1 N N N 25.588 7.708 -14.174 1.300 3.813 2.088 H18 YRP 47 YRP H19 H19 H 0 1 N N N 25.697 8.952 -15.465 1.796 2.173 2.568 H19 YRP 48 YRP H20 H20 H 0 1 N N N 26.762 6.458 -15.414 4.436 2.480 0.460 H20 YRP 49 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YRP CL28 C25 SING N N 1 YRP C24 C25 DOUB Y N 2 YRP C24 C23 SING Y N 3 YRP C25 C26 SING Y N 4 YRP C23 C22 DOUB Y N 5 YRP O20 C08 DOUB N N 6 YRP C26 C27 DOUB Y N 7 YRP C22 C27 SING Y N 8 YRP C22 N21 SING N N 9 YRP C08 N21 SING N N 10 YRP C08 C07 SING N N 11 YRP C07 C06 SING N N 12 YRP C07 C29 SING N N 13 YRP C06 C05 SING N N 14 YRP C06 C04 SING N N 15 YRP C05 C01 SING N N 16 YRP C05 C04 SING N N 17 YRP C01 C02 SING N N 18 YRP F18 C15 SING N N 19 YRP C14 C15 DOUB Y N 20 YRP C14 C10 SING Y N 21 YRP C15 C16 SING Y N 22 YRP C04 C03 SING N N 23 YRP C02 N09 SING N N 24 YRP C02 C03 SING N N 25 YRP C10 N09 SING Y N 26 YRP C10 C11 DOUB Y N 27 YRP F19 C16 SING N N 28 YRP C16 C17 DOUB Y N 29 YRP N09 C13 SING Y N 30 YRP C11 C17 SING Y N 31 YRP C11 N12 SING Y N 32 YRP C13 N12 DOUB Y N 33 YRP C14 H1 SING N N 34 YRP C13 H2 SING N N 35 YRP C01 H3 SING N N 36 YRP C01 H4 SING N N 37 YRP C02 H5 SING N N 38 YRP C03 H6 SING N N 39 YRP C03 H7 SING N N 40 YRP C04 H8 SING N N 41 YRP C05 H9 SING N N 42 YRP C06 H10 SING N N 43 YRP C07 H11 SING N N 44 YRP C17 H12 SING N N 45 YRP C23 H13 SING N N 46 YRP C24 H14 SING N N 47 YRP C26 H15 SING N N 48 YRP C27 H16 SING N N 49 YRP C29 H17 SING N N 50 YRP C29 H18 SING N N 51 YRP C29 H19 SING N N 52 YRP N21 H20 SING N N 53 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YRP SMILES ACDLabs 12.01 "Clc1ccc(cc1)NC(=O)C(C)C1C2CC(CC21)n1cnc2cc(F)c(F)cc21" YRP InChI InChI 1.03 "InChI=1S/C22H20ClF2N3O/c1-11(22(29)27-13-4-2-12(23)3-5-13)21-15-6-14(7-16(15)21)28-10-26-19-8-17(24)18(25)9-20(19)28/h2-5,8-11,14-16,21H,6-7H2,1H3,(H,27,29)/t11-,14-,15-,16+,21+/m1/s1" YRP InChIKey InChI 1.03 FVIXADGZFNVGRM-IDJJVQAESA-N YRP SMILES_CANONICAL CACTVS 3.385 "C[C@H]([C@H]1[C@@H]2C[C@H](C[C@H]12)n3cnc4cc(F)c(F)cc34)C(=O)Nc5ccc(Cl)cc5" YRP SMILES CACTVS 3.385 "C[CH]([CH]1[CH]2C[CH](C[CH]12)n3cnc4cc(F)c(F)cc34)C(=O)Nc5ccc(Cl)cc5" YRP SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H](C1[C@H]2[C@@H]1CC(C2)n3cnc4c3cc(c(c4)F)F)C(=O)Nc5ccc(cc5)Cl" YRP SMILES "OpenEye OEToolkits" 2.0.7 "CC(C1C2C1CC(C2)n3cnc4c3cc(c(c4)F)F)C(=O)Nc5ccc(cc5)Cl" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YRP "SYSTEMATIC NAME" ACDLabs 12.01 "(2R)-N-(4-chlorophenyl)-2-[(1R,3S,5S,6r)-3-(5,6-difluoro-1H-benzimidazol-1-yl)bicyclo[3.1.0]hexan-6-yl]propanamide" YRP "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R})-2-[(1~{R},5~{S})-3-[5,6-bis(fluoranyl)benzimidazol-1-yl]-6-bicyclo[3.1.0]hexanyl]-~{N}-(4-chlorophenyl)propanamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YRP "Create component" 2021-03-29 RCSB YRP "Initial release" 2021-09-01 RCSB ##