data_YRV # _chem_comp.id YRV _chem_comp.name "S-[(3-methylphenyl)methyl]-L-cysteine" _chem_comp.type "L-peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C11 H15 N O2 S" _chem_comp.mon_nstd_parent_comp_id CYS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-03-29 _chem_comp.pdbx_modified_date 2024-04-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 225.307 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YRV _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7M5N _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YRV CA C1 C 0 1 N N R N N N -22.274 39.743 0.124 3.120 -0.106 -0.584 C22 YRV 1 YRV C C2 C 0 1 N N N N N N -20.821 39.355 -0.108 4.472 0.018 0.071 C23 YRV 2 YRV C93 C3 C 0 1 N N N N N N -23.836 34.425 2.181 -4.953 -2.024 0.246 C93 YRV 3 YRV CB C4 C 0 1 N N N N N N -23.075 39.184 -1.034 2.030 0.261 0.424 CA2 YRV 4 YRV CA4 C5 C 0 1 N N N N N N -25.458 37.579 -1.480 -0.739 0.579 0.965 CA4 YRV 5 YRV CA5 C6 C 0 1 Y N N N N N -25.680 36.366 -0.563 -2.157 0.504 0.459 CA5 YRV 6 YRV CA6 C7 C 0 1 Y N N N N N -26.884 35.675 -0.610 -2.742 1.612 -0.125 CA6 YRV 7 YRV CA7 C8 C 0 1 Y N N N N N -27.086 34.580 0.219 -4.042 1.543 -0.589 CA7 YRV 8 YRV CA8 C9 C 0 1 Y N N N N N -26.097 34.198 1.111 -4.758 0.366 -0.469 CA8 YRV 9 YRV CA9 C10 C 0 1 Y N N N N N -24.896 34.889 1.170 -4.172 -0.742 0.114 CA9 YRV 10 YRV CAA C11 C 0 1 Y N N N N N -24.693 35.988 0.340 -2.871 -0.674 0.575 CAA YRV 11 YRV N N1 N 0 1 N N N N N N -22.346 41.198 0.158 2.921 -1.489 -1.039 N21 YRV 12 YRV O O1 O 0 1 N N N N N N -20.199 39.899 -0.955 5.039 -0.969 0.478 OA1 YRV 13 YRV SG S1 S 0 1 N N N N N N -24.820 39.008 -0.546 0.403 0.112 -0.364 SA3 YRV 14 YRV HA H1 H 0 1 N N N N N N -22.630 39.311 1.071 3.067 0.569 -1.438 H1 YRV 15 YRV H3 H3 H 0 1 N N N N N N -23.990 34.943 3.139 -4.797 -2.637 -0.642 H3 YRV 16 YRV H4 H4 H 0 1 N N N N N N -23.925 33.339 2.333 -4.612 -2.569 1.126 H4 YRV 17 YRV H5 H5 H 0 1 N N N N N N -22.833 34.660 1.795 -6.013 -1.796 0.348 H5 YRV 18 YRV HB2 H6 H 0 1 N N N N N N -22.673 38.199 -1.315 2.082 -0.414 1.278 H6 YRV 19 YRV HB3 H7 H 0 1 N N N N N N -23.003 39.868 -1.892 2.177 1.286 0.762 H7 YRV 20 YRV H8 H8 H 0 1 N N N N N N -24.733 37.309 -2.262 -0.523 1.597 1.290 H8 YRV 21 YRV H9 H9 H 0 1 N N N N N N -26.415 37.855 -1.947 -0.617 -0.104 1.806 H9 YRV 22 YRV H10 H10 H 0 1 N N N N N N -27.662 35.989 -1.290 -2.183 2.531 -0.219 H10 YRV 23 YRV H11 H11 H 0 1 N N N N N N -28.012 34.027 0.169 -4.499 2.409 -1.045 H11 YRV 24 YRV H12 H12 H 0 1 N N N N N N -26.263 33.355 1.766 -5.774 0.313 -0.831 H12 YRV 25 YRV H13 H13 H 0 1 N N N N N N -23.770 36.546 0.398 -2.413 -1.541 1.027 H13 YRV 26 YRV H H14 H 0 1 N N N N N N -21.810 41.541 0.930 2.966 -2.134 -0.265 H14 YRV 27 YRV H2 H15 H 0 1 N N N N N N -21.978 41.570 -0.694 2.050 -1.583 -1.539 H15 YRV 28 YRV OXT O2 O 0 1 N Y N N N N -20.192 38.304 0.706 5.046 1.224 0.203 O1 YRV 29 YRV HXT H2 H 0 1 N Y N N N N -19.292 38.183 0.428 5.913 1.253 0.629 H2 YRV 30 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YRV CA4 CA5 SING N N 1 YRV CA4 SG SING N N 2 YRV CB SG SING N N 3 YRV CB CA SING N N 4 YRV O C DOUB N N 5 YRV CA6 CA5 DOUB Y N 6 YRV CA6 CA7 SING Y N 7 YRV CA5 CAA SING Y N 8 YRV C CA SING N N 9 YRV CA N SING N N 10 YRV CA7 CA8 DOUB Y N 11 YRV CAA CA9 DOUB Y N 12 YRV CA8 CA9 SING Y N 13 YRV CA9 C93 SING N N 14 YRV CA HA SING N N 15 YRV C93 H3 SING N N 16 YRV C93 H4 SING N N 17 YRV C93 H5 SING N N 18 YRV CB HB2 SING N N 19 YRV CB HB3 SING N N 20 YRV CA4 H8 SING N N 21 YRV CA4 H9 SING N N 22 YRV CA6 H10 SING N N 23 YRV CA7 H11 SING N N 24 YRV CA8 H12 SING N N 25 YRV CAA H13 SING N N 26 YRV N H SING N N 27 YRV N H2 SING N N 28 YRV C OXT SING N N 29 YRV OXT HXT SING N N 30 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YRV SMILES ACDLabs 12.01 "O=C(O)C(N)CSCc1cccc(C)c1" YRV InChI InChI 1.03 "InChI=1S/C11H15NO2S/c1-8-3-2-4-9(5-8)6-15-7-10(12)11(13)14/h2-5,10H,6-7,12H2,1H3,(H,13,14)/t10-/m0/s1" YRV InChIKey InChI 1.03 ZQJYENZJJPWXJK-JTQLQIEISA-N YRV SMILES_CANONICAL CACTVS 3.385 "Cc1cccc(CSC[C@H](N)C(O)=O)c1" YRV SMILES CACTVS 3.385 "Cc1cccc(CSC[CH](N)C(O)=O)c1" YRV SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cccc(c1)CSC[C@@H](C(=O)O)N" YRV SMILES "OpenEye OEToolkits" 2.0.7 "Cc1cccc(c1)CSCC(C(=O)O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YRV "SYSTEMATIC NAME" ACDLabs 12.01 "S-[(3-methylphenyl)methyl]-L-cysteine" YRV "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R})-2-azanyl-3-[(3-methylphenyl)methylsulfanyl]propanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YRV "Create component" 2021-03-29 RCSB YRV "Initial release" 2024-04-24 RCSB #