data_YRX # _chem_comp.id YRX _chem_comp.name "7-[(1~{S})-1-[5-[(3-azanyl-3-methyl-azetidin-1-yl)methyl]-2-oxidanylidene-1,3-oxazolidin-3-yl]ethyl]-3-[3-fluoranyl-4-(methylsulfonylmethyl)phenyl]-1~{H}-indole-2-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H31 F N4 O6 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-20 _chem_comp.pdbx_modified_date 2024-07-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 558.622 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YRX _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8PGI _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YRX C10 C1 C 0 1 Y N N N N N -21.772 -11.803 9.903 1.611 0.202 -0.849 C10 YRX 1 YRX C17 C2 C 0 1 N N N N N N -20.646 -9.939 3.764 9.541 -1.094 1.197 C17 YRX 2 YRX C20 C3 C 0 1 Y N N N N N -19.648 -11.185 6.784 4.568 -1.170 1.022 C20 YRX 3 YRX C36 C4 C 0 1 N N N N N N -28.936 -12.901 16.489 -7.322 -2.265 0.443 C36 YRX 4 YRX C38 C5 C 0 1 N N N N N N -25.734 -11.445 13.288 -3.707 1.523 0.796 C38 YRX 5 YRX C01 C6 C 0 1 N N N N N N -22.974 -12.590 15.728 -3.125 3.982 -0.931 C01 YRX 6 YRX C02 C7 C 0 1 N N S N N N -23.417 -12.072 14.364 -2.553 2.579 -1.148 C02 YRX 7 YRX C03 C8 C 0 1 Y N N N N N -22.720 -12.831 13.208 -1.178 2.498 -0.536 C03 YRX 8 YRX C04 C9 C 0 1 Y N N N N N -22.474 -12.147 12.001 -0.322 1.453 -0.880 C04 YRX 9 YRX C06 C10 C 0 1 Y N N N N N -22.332 -10.638 10.433 0.701 -0.378 -1.715 C06 YRX 10 YRX C07 C11 C 0 1 N N N N N N -22.494 -9.286 9.742 0.926 -1.599 -2.493 C07 YRX 11 YRX C11 C12 C 0 1 Y N N N N N -21.146 -11.991 8.498 2.976 -0.282 -0.543 C11 YRX 12 YRX C12 C13 C 0 1 Y N N N N N -21.453 -13.096 7.712 3.952 -0.300 -1.540 C12 YRX 13 YRX C13 C14 C 0 1 Y N N N N N -20.863 -13.241 6.460 5.223 -0.752 -1.250 C13 YRX 14 YRX C14 C15 C 0 1 Y N N N N N -19.961 -12.287 5.990 5.532 -1.186 0.026 C14 YRX 15 YRX C15 C16 C 0 1 N N N N N N -19.314 -12.479 4.595 6.922 -1.678 0.336 C15 YRX 16 YRX C22 C17 C 0 1 Y N N N N N -20.239 -11.043 8.035 3.291 -0.720 0.743 C22 YRX 17 YRX C23 C18 C 0 1 Y N N N N N -21.858 -12.775 10.933 0.958 1.395 -0.298 C23 YRX 18 YRX C24 C19 C 0 1 Y N N N N N -21.487 -14.130 11.051 1.356 2.378 0.611 C24 YRX 19 YRX C25 C20 C 0 1 Y N N N N N -21.736 -14.817 12.243 0.500 3.392 0.933 C25 YRX 20 YRX C26 C21 C 0 1 Y N N N N N -22.357 -14.173 13.319 -0.765 3.455 0.363 C26 YRX 21 YRX C28 C22 C 0 1 N N N N N N -25.644 -13.325 14.622 -4.147 0.512 -1.208 C28 YRX 22 YRX C29 C23 C 0 1 N N N N N N -27.005 -13.165 14.135 -4.904 -0.213 -0.079 C29 YRX 23 YRX C30 C24 C 0 1 N N N N N N -28.168 -14.134 14.456 -6.414 -0.141 -0.313 C30 YRX 24 YRX C32 C25 C 0 1 N N N N N N -30.277 -14.424 15.700 -8.569 -0.589 0.716 C32 YRX 25 YRX C33 C26 C 0 1 N N N N N N -30.290 -13.477 16.889 -8.734 -2.087 1.030 C33 YRX 26 YRX C34 C27 C 0 1 N N N N N N -31.034 -14.397 17.893 -9.831 -2.771 0.213 C34 YRX 27 YRX F21 F1 F 0 1 N N N N N N -18.766 -10.231 6.350 4.875 -1.601 2.265 F21 YRX 28 YRX N05 N1 N 0 1 Y N N N N N -22.738 -10.875 11.667 -0.453 0.378 -1.727 N05 YRX 29 YRX N27 N2 N 0 1 N N N N N N -24.839 -12.283 14.139 -3.429 1.591 -0.513 N27 YRX 30 YRX N31 N3 N 0 1 N N N N N N -29.278 -13.453 15.133 -7.112 -0.838 0.776 N31 YRX 31 YRX N35 N4 N 0 1 N N N N N N -30.971 -12.171 17.296 -8.818 -2.384 2.467 N35 YRX 32 YRX O08 O1 O 0 1 N N N N N N -22.446 -8.238 10.444 -0.042 -2.069 -3.307 O08 YRX 33 YRX O09 O2 O 0 1 N N N N N N -22.703 -9.238 8.498 1.986 -2.189 -2.406 O09 YRX 34 YRX O18 O3 O 0 1 N N N N N N -19.628 -11.729 1.983 7.434 0.192 2.123 O18 YRX 35 YRX O19 O4 O 0 1 N N N N N N -21.539 -12.413 3.010 8.102 0.620 -0.196 O19 YRX 36 YRX O37 O5 O 0 1 N N N N N N -27.097 -12.029 13.306 -4.537 0.526 1.122 O37 YRX 37 YRX O39 O6 O 0 1 N N N N N N -25.405 -10.467 12.701 -3.244 2.294 1.613 O39 YRX 38 YRX S16 S1 S 0 1 N N N N N N -20.304 -11.669 3.284 7.947 -0.286 0.887 S16 YRX 39 YRX H173 H1 H 0 0 N N N N N N -21.152 -9.922 4.741 9.417 -1.863 1.960 H173 YRX 40 YRX H171 H2 H 0 0 N N N N N N -19.699 -9.383 3.832 9.902 -1.552 0.276 H171 YRX 41 YRX H172 H3 H 0 0 N N N N N N -21.293 -9.470 3.008 10.263 -0.354 1.541 H172 YRX 42 YRX H361 H4 H 0 0 N N N N N N -28.065 -13.360 16.979 -6.691 -2.946 1.014 H361 YRX 43 YRX H362 H5 H 0 0 N N N N N N -28.854 -11.806 16.546 -7.314 -2.474 -0.627 H362 YRX 44 YRX H011 H6 H 0 0 N N N N N N -23.490 -12.027 16.520 -4.120 4.041 -1.373 H011 YRX 45 YRX H013 H7 H 0 0 N N N N N N -23.225 -13.657 15.814 -3.190 4.187 0.137 H013 YRX 46 YRX H012 H8 H 0 0 N N N N N N -21.887 -12.459 15.834 -2.473 4.717 -1.403 H012 YRX 47 YRX H021 H9 H 0 0 N N N N N N -23.174 -11.002 14.286 -2.489 2.374 -2.216 H021 YRX 48 YRX H121 H10 H 0 0 N N N N N N -22.148 -13.840 8.072 3.713 0.038 -2.538 H121 YRX 49 YRX H131 H11 H 0 0 N N N N N N -21.105 -14.098 5.849 5.978 -0.766 -2.022 H131 YRX 50 YRX H152 H12 H 0 0 N N N N N N -19.244 -13.555 4.378 6.875 -2.429 1.124 H152 YRX 51 YRX H151 H13 H 0 0 N N N N N N -18.305 -12.040 4.605 7.360 -2.118 -0.561 H151 YRX 52 YRX H221 H14 H 0 0 N N N N N N -19.992 -10.191 8.651 2.540 -0.709 1.519 H221 YRX 53 YRX H241 H15 H 0 0 N N N N N N -21.012 -14.636 10.223 2.338 2.335 1.059 H241 YRX 54 YRX H251 H16 H 0 0 N N N N N N -21.447 -15.854 12.334 0.808 4.151 1.637 H251 YRX 55 YRX H261 H17 H 0 0 N N N N N N -22.555 -14.714 14.233 -1.431 4.263 0.627 H261 YRX 56 YRX H1 H18 H 0 1 N N N N N N -25.645 -13.305 15.722 -3.443 -0.165 -1.694 H1 YRX 57 YRX H281 H19 H 0 0 N N N N N N -25.243 -14.288 14.273 -4.847 0.922 -1.937 H281 YRX 58 YRX H2 H20 H 0 1 N N N N N N -27.258 -12.555 15.015 -4.578 -1.251 -0.006 H2 YRX 59 YRX H301 H21 H 0 0 N N N N N N -28.538 -14.569 13.516 -6.729 0.902 -0.337 H301 YRX 60 YRX H302 H22 H 0 0 N N N N N N -27.792 -14.936 15.108 -6.657 -0.616 -1.263 H302 YRX 61 YRX H322 H23 H 0 0 N N N N N N -31.225 -14.501 15.148 -8.926 -0.306 -0.274 H322 YRX 62 YRX H321 H24 H 0 0 N N N N N N -29.890 -15.433 15.905 -8.937 0.068 1.505 H321 YRX 63 YRX H342 H25 H 0 0 N N N N N N -31.148 -13.875 18.854 -9.633 -3.842 0.162 H342 YRX 64 YRX H343 H26 H 0 0 N N N N N N -32.027 -14.649 17.493 -10.797 -2.602 0.688 H343 YRX 65 YRX H341 H27 H 0 0 N N N N N N -30.454 -15.320 18.044 -9.845 -2.356 -0.795 H341 YRX 66 YRX H051 H28 H 0 0 N N N N N N -23.178 -10.205 12.265 -1.242 0.180 -2.255 H051 YRX 67 YRX H351 H30 H 0 0 N N N N N N -30.663 -11.905 18.209 -9.759 -2.255 2.808 H351 YRX 68 YRX H352 H31 H 0 0 N N N N N N -30.733 -11.453 16.642 -8.487 -3.317 2.663 H352 YRX 69 YRX H5 H33 H 0 1 N N N N N N -22.587 -7.479 9.891 0.199 -2.878 -3.779 H5 YRX 70 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YRX O18 S16 DOUB N N 1 YRX O19 S16 DOUB N N 2 YRX S16 C17 SING N N 3 YRX S16 C15 SING N N 4 YRX C15 C14 SING N N 5 YRX C14 C13 DOUB Y N 6 YRX C14 C20 SING Y N 7 YRX F21 C20 SING N N 8 YRX C13 C12 SING Y N 9 YRX C20 C22 DOUB Y N 10 YRX C12 C11 DOUB Y N 11 YRX C22 C11 SING Y N 12 YRX C11 C10 SING N N 13 YRX O09 C07 DOUB N N 14 YRX C07 C06 SING N N 15 YRX C07 O08 SING N N 16 YRX C10 C06 DOUB Y N 17 YRX C10 C23 SING Y N 18 YRX C06 N05 SING Y N 19 YRX C23 C24 DOUB Y N 20 YRX C23 C04 SING Y N 21 YRX C24 C25 SING Y N 22 YRX N05 C04 SING Y N 23 YRX C04 C03 DOUB Y N 24 YRX C25 C26 DOUB Y N 25 YRX O39 C38 DOUB N N 26 YRX C03 C26 SING Y N 27 YRX C03 C02 SING N N 28 YRX C38 O37 SING N N 29 YRX C38 N27 SING N N 30 YRX O37 C29 SING N N 31 YRX C29 C30 SING N N 32 YRX C29 C28 SING N N 33 YRX N27 C02 SING N N 34 YRX N27 C28 SING N N 35 YRX C02 C01 SING N N 36 YRX C30 N31 SING N N 37 YRX N31 C32 SING N N 38 YRX N31 C36 SING N N 39 YRX C32 C33 SING N N 40 YRX C36 C33 SING N N 41 YRX C33 N35 SING N N 42 YRX C33 C34 SING N N 43 YRX C17 H173 SING N N 44 YRX C17 H171 SING N N 45 YRX C17 H172 SING N N 46 YRX C36 H361 SING N N 47 YRX C36 H362 SING N N 48 YRX C01 H011 SING N N 49 YRX C01 H013 SING N N 50 YRX C01 H012 SING N N 51 YRX C02 H021 SING N N 52 YRX C12 H121 SING N N 53 YRX C13 H131 SING N N 54 YRX C15 H152 SING N N 55 YRX C15 H151 SING N N 56 YRX C22 H221 SING N N 57 YRX C24 H241 SING N N 58 YRX C25 H251 SING N N 59 YRX C26 H261 SING N N 60 YRX C28 H1 SING N N 61 YRX C28 H281 SING N N 62 YRX C29 H2 SING N N 63 YRX C30 H301 SING N N 64 YRX C30 H302 SING N N 65 YRX C32 H322 SING N N 66 YRX C32 H321 SING N N 67 YRX C34 H342 SING N N 68 YRX C34 H343 SING N N 69 YRX C34 H341 SING N N 70 YRX N05 H051 SING N N 71 YRX N35 H351 SING N N 72 YRX N35 H352 SING N N 73 YRX O08 H5 SING N N 74 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YRX InChI InChI 1.06 "InChI=1S/C27H31FN4O6S/c1-15(32-11-18(38-26(32)35)10-31-13-27(2,29)14-31)19-5-4-6-20-22(24(25(33)34)30-23(19)20)16-7-8-17(21(28)9-16)12-39(3,36)37/h4-9,15,18,30H,10-14,29H2,1-3H3,(H,33,34)/t15-,18-/m0/s1" YRX InChIKey InChI 1.06 WWAISRYXVOSNGI-YJBOKZPZSA-N YRX SMILES_CANONICAL CACTVS 3.385 "C[C@H](N1C[C@H](CN2CC(C)(N)C2)OC1=O)c3cccc4c3[nH]c(C(O)=O)c4c5ccc(C[S](C)(=O)=O)c(F)c5" YRX SMILES CACTVS 3.385 "C[CH](N1C[CH](CN2CC(C)(N)C2)OC1=O)c3cccc4c3[nH]c(C(O)=O)c4c5ccc(C[S](C)(=O)=O)c(F)c5" YRX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](c1cccc2c1[nH]c(c2c3ccc(c(c3)F)CS(=O)(=O)C)C(=O)O)N4CC(OC4=O)CN5CC(C5)(C)N" YRX SMILES "OpenEye OEToolkits" 2.0.7 "CC(c1cccc2c1[nH]c(c2c3ccc(c(c3)F)CS(=O)(=O)C)C(=O)O)N4CC(OC4=O)CN5CC(C5)(C)N" # _pdbx_chem_comp_identifier.comp_id YRX _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "7-[(1~{S})-1-[5-[(3-azanyl-3-methyl-azetidin-1-yl)methyl]-2-oxidanylidene-1,3-oxazolidin-3-yl]ethyl]-3-[3-fluoranyl-4-(methylsulfonylmethyl)phenyl]-1~{H}-indole-2-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YRX "Create component" 2023-06-20 PDBE YRX "Initial release" 2024-07-10 RCSB #