data_YS9 # _chem_comp.id YS9 _chem_comp.name "(1R,3R,7E,17beta)-17-[(2R,3S)-3-butyl-6-hydroxy-6-methylheptan-2-yl]-2-methylidene-9,10-secoestra-5,7-diene-1,3-diol" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C31 H52 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2014-04-29 _chem_comp.pdbx_modified_date 2015-04-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 472.743 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YS9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3WTQ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YS9 O30 O30 O 0 1 N N N 9.271 -3.779 28.452 -5.502 2.956 2.095 O30 YS9 1 YS9 C27 C27 C 0 1 N N N 8.819 -2.610 27.673 -5.079 3.283 0.770 C27 YS9 2 YS9 C29 C29 C 0 1 N N N 7.826 -1.811 28.548 -6.296 3.330 -0.156 C29 YS9 3 YS9 C28 C28 C 0 1 N N N 8.137 -3.113 26.433 -4.391 4.650 0.777 C28 YS9 4 YS9 C26 C26 C 0 1 N N N 10.014 -1.725 27.254 -4.098 2.221 0.271 C26 YS9 5 YS9 C25 C25 C 0 1 N N N 10.892 -1.353 28.442 -4.821 0.878 0.145 C25 YS9 6 YS9 C20 C20 C 0 1 N N S 12.139 -0.481 28.100 -3.868 -0.160 -0.451 C20 YS9 7 YS9 C21 C21 C 0 1 N N N 12.855 -0.184 29.414 -4.623 -1.469 -0.689 C21 YS9 8 YS9 C22 C22 C 0 1 N N N 13.842 -1.282 29.726 -5.678 -1.258 -1.777 C22 YS9 9 YS9 C23 C23 C 0 1 N N N 15.034 -1.227 28.773 -6.507 -2.534 -1.937 C23 YS9 10 YS9 C24 C24 C 0 1 N N N 15.673 -2.585 28.545 -7.562 -2.324 -3.026 C24 YS9 11 YS9 C18 C18 C 0 1 N N R 11.811 0.793 27.316 -2.711 -0.408 0.520 C18 YS9 12 YS9 C19 C19 C 0 1 N N N 10.738 1.573 28.120 -3.258 -0.984 1.827 C19 YS9 13 YS9 C17 C17 C 0 1 N N R 13.079 1.583 26.945 -1.727 -1.400 -0.102 C17 YS9 14 YS9 C16 C16 C 0 1 N N N 14.015 0.885 25.933 -1.207 -0.863 -1.462 C16 YS9 15 YS9 C15 C15 C 0 1 N N N 14.633 1.998 25.044 0.342 -0.803 -1.345 C15 YS9 16 YS9 C13 C13 C 0 1 N N R 12.852 2.988 26.354 -0.489 -1.533 0.771 C13 YS9 17 YS9 C14 C14 C 0 1 N N S 14.216 3.284 25.765 0.639 -1.838 -0.257 C14 YS9 18 YS9 C34 C34 C 0 1 N N N 11.708 2.968 25.349 -0.192 -0.187 1.435 C34 YS9 19 YS9 C12 C12 C 0 1 N N N 12.581 4.095 27.348 -0.463 -2.622 1.817 C12 YS9 20 YS9 C11 C11 C 0 1 N N N 12.561 5.478 26.665 0.839 -2.463 2.621 C11 YS9 21 YS9 C10 C10 C 0 1 N N N 13.867 5.781 25.968 2.073 -2.565 1.727 C10 YS9 22 YS9 C9 C9 C 0 1 N N N 14.206 4.609 25.042 1.925 -1.673 0.496 C9 YS9 23 YS9 C8 C8 C 0 1 N N N 14.472 4.706 23.730 2.866 -0.814 0.119 C8 YS9 24 YS9 C7 C7 C 0 1 N N N 14.362 5.941 22.946 4.109 -0.696 0.897 C7 YS9 25 YS9 C6 C6 C 0 1 N N N 14.274 5.968 21.601 5.003 0.235 0.583 C6 YS9 26 YS9 C1 C1 C 0 1 N N N 14.107 7.298 20.912 6.343 0.281 1.281 C1 YS9 27 YS9 C2 C2 C 0 1 N N R 14.835 7.368 19.568 7.450 0.233 0.220 C2 YS9 28 YS9 O32 O32 O 0 1 N N N 16.243 7.353 19.681 7.490 -1.067 -0.373 O32 YS9 29 YS9 C5 C5 C 0 1 N N N 14.390 4.700 20.761 4.701 1.264 -0.483 C5 YS9 30 YS9 C4 C4 C 0 1 N N R 14.737 4.794 19.278 5.811 1.213 -1.541 C4 YS9 31 YS9 O31 O31 O 0 1 N N N 13.899 3.885 18.477 5.686 2.331 -2.422 O31 YS9 32 YS9 C3 C3 C 0 1 N N N 14.427 6.187 18.789 7.145 1.265 -0.842 C3 YS9 33 YS9 C33 C33 C 0 1 N N N 13.749 6.351 17.707 8.026 2.183 -1.154 C33 YS9 34 YS9 H1 H1 H 0 1 N N N 9.706 -3.484 29.243 -6.127 3.588 2.476 H1 YS9 35 YS9 H2 H2 H 0 1 N N N 8.340 -1.450 29.451 -6.995 4.087 0.199 H2 YS9 36 YS9 H3 H3 H 0 1 N N N 7.443 -0.953 27.977 -5.973 3.579 -1.167 H3 YS9 37 YS9 H4 H4 H 0 1 N N N 6.988 -2.462 28.839 -6.786 2.356 -0.162 H4 YS9 38 YS9 H5 H5 H 0 1 N N N 7.283 -3.746 26.715 -3.524 4.617 1.438 H5 YS9 39 YS9 H6 H6 H 0 1 N N N 7.780 -2.259 25.839 -4.069 4.900 -0.233 H6 YS9 40 YS9 H7 H7 H 0 1 N N N 8.849 -3.703 25.837 -5.090 5.407 1.133 H7 YS9 41 YS9 H8 H8 H 0 1 N N N 10.623 -2.274 26.521 -3.708 2.516 -0.703 H8 YS9 42 YS9 H9 H9 H 0 1 N N N 9.629 -0.803 26.794 -3.275 2.125 0.978 H9 YS9 43 YS9 H10 H10 H 0 1 N N N 10.274 -0.795 29.161 -5.148 0.548 1.131 H10 YS9 44 YS9 H11 H11 H 0 1 N N N 11.246 -2.284 28.908 -5.687 0.992 -0.506 H11 YS9 45 YS9 H12 H12 H 0 1 N N N 12.811 -1.094 27.481 -3.474 0.209 -1.398 H12 YS9 46 YS9 H13 H13 H 0 1 N N N 13.390 0.773 29.328 -3.922 -2.241 -1.007 H13 YS9 47 YS9 H14 H14 H 0 1 N N N 12.115 -0.119 30.225 -5.111 -1.779 0.235 H14 YS9 48 YS9 H15 H15 H 0 1 N N N 13.342 -2.256 29.622 -6.332 -0.433 -1.495 H15 YS9 49 YS9 H16 H16 H 0 1 N N N 14.200 -1.162 30.759 -5.185 -1.025 -2.721 H16 YS9 50 YS9 H17 H17 H 0 1 N N N 15.791 -0.550 29.196 -5.853 -3.360 -2.220 H17 YS9 51 YS9 H18 H18 H 0 1 N N N 14.691 -0.834 27.805 -7.000 -2.768 -0.994 H18 YS9 52 YS9 H19 H19 H 0 1 N N N 16.522 -2.480 27.853 -8.152 -3.233 -3.140 H19 YS9 53 YS9 H20 H20 H 0 1 N N N 16.030 -2.988 29.504 -8.215 -1.499 -2.744 H20 YS9 54 YS9 H21 H21 H 0 1 N N N 14.930 -3.272 28.113 -7.068 -2.091 -3.969 H21 YS9 55 YS9 H22 H22 H 0 1 N N N 11.339 0.480 26.373 -2.200 0.533 0.723 H22 YS9 56 YS9 H23 H23 H 0 1 N N N 9.883 0.913 28.327 -2.435 -1.160 2.519 H23 YS9 57 YS9 H24 H24 H 0 1 N N N 11.172 1.920 29.069 -3.960 -0.277 2.271 H24 YS9 58 YS9 H25 H25 H 0 1 N N N 10.399 2.440 27.534 -3.770 -1.925 1.624 H25 YS9 59 YS9 H26 H26 H 0 1 N N N 13.655 1.716 27.872 -2.202 -2.371 -0.236 H26 YS9 60 YS9 H27 H27 H 0 1 N N N 13.442 0.180 25.312 -1.497 -1.539 -2.266 H27 YS9 61 YS9 H28 H28 H 0 1 N N N 14.810 0.342 26.466 -1.608 0.134 -1.648 H28 YS9 62 YS9 H29 H29 H 0 1 N N N 14.221 1.965 24.025 0.812 -1.086 -2.287 H29 YS9 63 YS9 H30 H30 H 0 1 N N N 15.728 1.907 25.000 0.667 0.189 -1.033 H30 YS9 64 YS9 H31 H31 H 0 1 N N N 14.904 3.397 26.615 0.541 -2.850 -0.651 H31 YS9 65 YS9 H32 H32 H 0 1 N N N 10.765 2.746 25.870 -0.974 0.041 2.160 H32 YS9 66 YS9 H33 H33 H 0 1 N N N 11.633 3.950 24.859 0.771 -0.237 1.944 H33 YS9 67 YS9 H34 H34 H 0 1 N N N 11.899 2.194 24.591 -0.161 0.594 0.675 H34 YS9 68 YS9 H35 H35 H 0 1 N N N 11.605 3.917 27.823 -1.322 -2.519 2.480 H35 YS9 69 YS9 H36 H36 H 0 1 N N N 13.369 4.087 28.115 -0.484 -3.599 1.335 H36 YS9 70 YS9 H37 H37 H 0 1 N N N 12.378 6.249 27.428 0.836 -1.490 3.112 H37 YS9 71 YS9 H38 H38 H 0 1 N N N 11.749 5.496 25.923 0.885 -3.244 3.380 H38 YS9 72 YS9 H39 H39 H 0 1 N N N 14.665 5.908 26.714 2.952 -2.254 2.291 H39 YS9 73 YS9 H40 H40 H 0 1 N N N 13.767 6.704 25.378 2.199 -3.600 1.407 H40 YS9 74 YS9 H41 H41 H 0 1 N N N 14.790 3.811 23.215 2.719 -0.204 -0.760 H41 YS9 75 YS9 H42 H42 H 0 1 N N N 14.351 6.882 23.476 4.294 -1.365 1.724 H42 YS9 76 YS9 H43 H43 H 0 1 N N N 14.505 8.086 21.568 6.426 1.205 1.854 H43 YS9 77 YS9 H44 H44 H 0 1 N N N 13.035 7.472 20.740 6.437 -0.574 1.950 H44 YS9 78 YS9 H45 H45 H 0 1 N N N 14.509 8.278 19.043 8.411 0.454 0.683 H45 YS9 79 YS9 H46 H46 H 0 1 N N N 16.529 8.108 20.181 8.168 -1.168 -1.054 H46 YS9 80 YS9 H47 H47 H 0 1 N N N 13.420 4.186 20.828 3.742 1.037 -0.949 H47 YS9 81 YS9 H48 H48 H 0 1 N N N 15.167 4.079 21.230 4.665 2.256 -0.034 H48 YS9 82 YS9 H49 H49 H 0 1 N N N 15.803 4.570 19.129 5.731 0.287 -2.111 H49 YS9 83 YS9 H50 H50 H 0 1 N N N 14.057 2.988 18.747 6.358 2.362 -3.116 H50 YS9 84 YS9 H51 H51 H 0 1 N N N 13.486 7.346 17.380 7.798 2.912 -1.918 H51 YS9 85 YS9 H52 H52 H 0 1 N N N 13.443 5.493 17.126 8.979 2.212 -0.647 H52 YS9 86 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YS9 C33 C3 DOUB N N 1 YS9 O31 C4 SING N N 2 YS9 C3 C4 SING N N 3 YS9 C3 C2 SING N N 4 YS9 C4 C5 SING N N 5 YS9 C2 O32 SING N N 6 YS9 C2 C1 SING N N 7 YS9 C5 C6 SING N N 8 YS9 C1 C6 SING N N 9 YS9 C6 C7 DOUB N N 10 YS9 C7 C8 SING N N 11 YS9 C8 C9 DOUB N E 12 YS9 C9 C14 SING N N 13 YS9 C9 C10 SING N N 14 YS9 C15 C14 SING N N 15 YS9 C15 C16 SING N N 16 YS9 C34 C13 SING N N 17 YS9 C14 C13 SING N N 18 YS9 C16 C17 SING N N 19 YS9 C10 C11 SING N N 20 YS9 C13 C17 SING N N 21 YS9 C13 C12 SING N N 22 YS9 C28 C27 SING N N 23 YS9 C11 C12 SING N N 24 YS9 C17 C18 SING N N 25 YS9 C26 C27 SING N N 26 YS9 C26 C25 SING N N 27 YS9 C18 C20 SING N N 28 YS9 C18 C19 SING N N 29 YS9 C27 O30 SING N N 30 YS9 C27 C29 SING N N 31 YS9 C20 C25 SING N N 32 YS9 C20 C21 SING N N 33 YS9 C24 C23 SING N N 34 YS9 C23 C22 SING N N 35 YS9 C21 C22 SING N N 36 YS9 O30 H1 SING N N 37 YS9 C29 H2 SING N N 38 YS9 C29 H3 SING N N 39 YS9 C29 H4 SING N N 40 YS9 C28 H5 SING N N 41 YS9 C28 H6 SING N N 42 YS9 C28 H7 SING N N 43 YS9 C26 H8 SING N N 44 YS9 C26 H9 SING N N 45 YS9 C25 H10 SING N N 46 YS9 C25 H11 SING N N 47 YS9 C20 H12 SING N N 48 YS9 C21 H13 SING N N 49 YS9 C21 H14 SING N N 50 YS9 C22 H15 SING N N 51 YS9 C22 H16 SING N N 52 YS9 C23 H17 SING N N 53 YS9 C23 H18 SING N N 54 YS9 C24 H19 SING N N 55 YS9 C24 H20 SING N N 56 YS9 C24 H21 SING N N 57 YS9 C18 H22 SING N N 58 YS9 C19 H23 SING N N 59 YS9 C19 H24 SING N N 60 YS9 C19 H25 SING N N 61 YS9 C17 H26 SING N N 62 YS9 C16 H27 SING N N 63 YS9 C16 H28 SING N N 64 YS9 C15 H29 SING N N 65 YS9 C15 H30 SING N N 66 YS9 C14 H31 SING N N 67 YS9 C34 H32 SING N N 68 YS9 C34 H33 SING N N 69 YS9 C34 H34 SING N N 70 YS9 C12 H35 SING N N 71 YS9 C12 H36 SING N N 72 YS9 C11 H37 SING N N 73 YS9 C11 H38 SING N N 74 YS9 C10 H39 SING N N 75 YS9 C10 H40 SING N N 76 YS9 C8 H41 SING N N 77 YS9 C7 H42 SING N N 78 YS9 C1 H43 SING N N 79 YS9 C1 H44 SING N N 80 YS9 C2 H45 SING N N 81 YS9 O32 H46 SING N N 82 YS9 C5 H47 SING N N 83 YS9 C5 H48 SING N N 84 YS9 C4 H49 SING N N 85 YS9 O31 H50 SING N N 86 YS9 C33 H51 SING N N 87 YS9 C33 H52 SING N N 88 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YS9 SMILES ACDLabs 12.01 "OC3C(=C)\C(O)C/C(=C\C=C1/CCCC2(C)C(C(C)C(CCCC)CCC(O)(C)C)CCC12)C3" YS9 InChI InChI 1.03 "InChI=1S/C31H52O3/c1-7-8-10-24(16-18-30(4,5)34)21(2)26-14-15-27-25(11-9-17-31(26,27)6)13-12-23-19-28(32)22(3)29(33)20-23/h12-13,21,24,26-29,32-34H,3,7-11,14-20H2,1-2,4-6H3/b25-13+/t21-,24+,26-,27+,28-,29-,31-/m1/s1" YS9 InChIKey InChI 1.03 RSXHMKSDJHHTDU-VWOHJUMJSA-N YS9 SMILES_CANONICAL CACTVS 3.385 "CCCC[C@@H](CCC(C)(C)O)[C@@H](C)[C@H]1CC[C@H]2/C(CCC[C@]12C)=C/C=C3C[C@@H](O)C(=C)[C@H](O)C3" YS9 SMILES CACTVS 3.385 "CCCC[CH](CCC(C)(C)O)[CH](C)[CH]1CC[CH]2C(CCC[C]12C)=CC=C3C[CH](O)C(=C)[CH](O)C3" YS9 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CCCC[C@@H](CCC(C)(C)O)[C@@H](C)[C@H]1CC[C@@H]\2[C@@]1(CCC/C2=C\C=C3C[C@H](C(=C)[C@@H](C3)O)O)C" YS9 SMILES "OpenEye OEToolkits" 1.7.6 "CCCCC(CCC(C)(C)O)C(C)C1CCC2C1(CCCC2=CC=C3CC(C(=C)C(C3)O)O)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YS9 "SYSTEMATIC NAME" ACDLabs 12.01 "(1R,3R,7E,17beta)-17-[(2R,3S)-3-butyl-6-hydroxy-6-methylheptan-2-yl]-2-methylidene-9,10-secoestra-5,7-diene-1,3-diol" YS9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(1R,3R)-5-[(2E)-2-[(1R,3aS,7aR)-1-[(2R,3S)-3-butyl-6-methyl-6-oxidanyl-heptan-2-yl]-7a-methyl-2,3,3a,5,6,7-hexahydro-1H-inden-4-ylidene]ethylidene]-2-methylidene-cyclohexane-1,3-diol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YS9 "Create component" 2014-04-29 PDBJ YS9 "Initial release" 2015-04-15 RCSB #