data_YSB # _chem_comp.id YSB _chem_comp.name "7-[(1~{S})-1-[5-[2-(1-azanylcyclopropyl)ethyl]-2-oxidanylidene-1,3-oxazol-3-yl]ethyl]-3-[3-fluoranyl-4-(methylsulfonylmethyl)phenyl]-1~{H}-indole-2-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H28 F N3 O6 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-20 _chem_comp.pdbx_modified_date 2024-07-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 541.591 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YSB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8PGC _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YSB C13 C1 C 0 1 N N S N N N -20.593 -12.020 -25.655 3.122 -2.831 -1.093 C13 YSB 1 YSB C14 C2 C 0 1 N N N N N N -19.884 -12.394 -24.339 3.611 -4.281 -1.056 C14 YSB 2 YSB C11 C3 C 0 1 N N N N N N -22.664 -13.229 -24.948 4.762 -0.931 -0.658 C11 YSB 3 YSB C02 C4 C 0 1 N N N N N N -27.674 -13.602 -23.888 6.519 3.184 0.814 C02 YSB 4 YSB C03 C5 C 0 1 N N N N N N -27.556 -14.767 -22.893 5.964 4.533 1.276 C03 YSB 5 YSB C04 C6 C 0 1 N N N N N N -27.978 -15.037 -24.347 6.277 4.301 -0.203 C04 YSB 6 YSB C05 C7 C 0 1 N N N N N N -26.336 -12.926 -24.320 5.558 1.993 0.798 C05 YSB 7 YSB C06 C8 C 0 1 N N N N N N -25.214 -13.926 -24.694 6.327 0.723 0.428 C06 YSB 8 YSB C07 C9 C 0 1 N N N N N N -24.017 -13.092 -25.210 5.381 -0.450 0.412 C07 YSB 9 YSB C09 C10 C 0 1 N N N N N N -22.880 -11.428 -26.357 4.164 -2.142 1.086 C09 YSB 10 YSB C15 C11 C 0 1 Y N N N N N -19.966 -12.819 -26.823 1.704 -2.766 -0.587 C15 YSB 11 YSB C16 C12 C 0 1 Y N N N N N -19.784 -12.159 -27.998 0.926 -1.636 -0.832 C16 YSB 12 YSB C18 C13 C 0 1 Y N N N N N -19.747 -10.604 -29.631 0.058 0.354 -1.452 C18 YSB 13 YSB C19 C14 C 0 1 N N N N N N -20.035 -9.288 -30.259 -0.046 1.689 -2.047 C19 YSB 14 YSB C22 C15 C 0 1 Y N N N N N -19.238 -11.734 -30.180 -0.949 -0.301 -0.765 C22 YSB 15 YSB C23 C16 C 0 1 Y N N N N N -18.669 -11.931 -31.586 -2.312 0.207 -0.497 C23 YSB 16 YSB C24 C17 C 0 1 Y N N N N N -18.939 -13.000 -32.303 -3.195 0.435 -1.553 C24 YSB 17 YSB C25 C18 C 0 1 Y N N N N N -18.314 -13.141 -33.692 -4.466 0.908 -1.297 C25 YSB 18 YSB C26 C19 C 0 1 Y N N N N N -17.489 -12.220 -34.142 -4.867 1.156 0.003 C26 YSB 19 YSB C27 C20 C 0 1 Y N N N N N -17.176 -11.005 -33.284 -3.996 0.931 1.057 C27 YSB 20 YSB C29 C21 C 0 1 Y N N N N N -17.705 -10.873 -32.093 -2.723 0.453 0.814 C29 YSB 21 YSB C30 C22 C 0 1 N N N N N N -16.857 -12.343 -35.544 -6.256 1.673 0.274 C30 YSB 22 YSB C32 C23 C 0 1 N N N N N N -18.152 -9.729 -36.157 -8.964 1.114 0.819 C32 YSB 23 YSB C35 C24 C 0 1 Y N N N N N -19.180 -12.816 -29.152 -0.398 -1.598 -0.356 C35 YSB 24 YSB C36 C25 C 0 1 Y N N N N N -18.785 -14.134 -29.080 -0.916 -2.684 0.353 C36 YSB 25 YSB C37 C26 C 0 1 Y N N N N N -18.971 -14.815 -27.853 -0.135 -3.781 0.581 C37 YSB 26 YSB C38 C27 C 0 1 Y N N N N N -19.566 -14.167 -26.728 1.172 -3.825 0.113 C38 YSB 27 YSB F28 F1 F 0 1 N N N N N N -16.343 -10.028 -33.743 -4.394 1.176 2.325 F28 YSB 28 YSB N01 N1 N 0 1 N N N N N N -28.857 -12.755 -23.737 7.912 2.870 1.158 N01 YSB 29 YSB N12 N2 N 0 1 N N N N N N -22.040 -12.209 -25.630 3.982 -2.004 -0.244 N12 YSB 30 YSB N17 N3 N 0 1 Y N N N N N -20.033 -10.875 -28.391 1.177 -0.454 -1.487 N17 YSB 31 YSB O08 O1 O 0 1 N N N N N N -24.204 -11.902 -26.133 5.021 -1.190 1.486 O08 YSB 32 YSB O10 O2 O 0 1 N N N N N N -22.638 -10.492 -27.041 3.643 -2.981 1.796 O10 YSB 33 YSB O20 O3 O 0 1 N N N N N N -20.008 -8.259 -29.504 1.010 2.223 -2.695 O20 YSB 34 YSB O21 O4 O 0 1 N N N N N N -20.343 -9.334 -31.481 -1.084 2.315 -1.957 O21 YSB 35 YSB O33 O5 O 0 1 N N N N N N -19.169 -12.152 -36.883 -7.484 -0.443 -0.710 O33 YSB 36 YSB O34 O6 O 0 1 N N N N N N -17.230 -11.361 -38.068 -7.005 -0.419 1.694 O34 YSB 37 YSB S31 S1 S 0 1 N N N N N N -17.891 -11.431 -36.749 -7.386 0.274 0.513 S31 YSB 38 YSB H131 H1 H 0 0 N N N N N N -20.389 -10.956 -25.844 3.159 -2.462 -2.118 H131 YSB 39 YSB H142 H2 H 0 0 N N N N N N -20.329 -11.827 -23.508 3.573 -4.650 -0.031 H142 YSB 40 YSB H141 H3 H 0 0 N N N N N N -20.003 -13.471 -24.152 2.971 -4.896 -1.688 H141 YSB 41 YSB H143 H4 H 0 0 N N N N N N -18.814 -12.151 -24.417 4.636 -4.328 -1.422 H143 YSB 42 YSB H111 H5 H 0 0 N N N N N N -22.194 -13.983 -24.334 4.844 -0.554 -1.666 H111 YSB 43 YSB H032 H6 H 0 0 N N N N N N -28.289 -14.872 -22.079 4.914 4.572 1.569 H032 YSB 44 YSB H031 H7 H 0 0 N N N N N N -26.566 -15.090 -22.539 6.632 5.187 1.836 H031 YSB 45 YSB H041 H8 H 0 0 N N N N N N -29.012 -15.335 -24.573 7.152 4.803 -0.617 H041 YSB 46 YSB H042 H9 H 0 0 N N N N N N -27.290 -15.553 -25.033 5.434 4.188 -0.884 H042 YSB 47 YSB H051 H10 H 0 0 N N N N N N -25.979 -12.302 -23.487 5.112 1.873 1.785 H051 YSB 48 YSB H052 H11 H 0 0 N N N N N N -26.537 -12.290 -25.194 4.773 2.170 0.063 H052 YSB 49 YSB H062 H12 H 0 0 N N N N N N -25.565 -14.610 -25.481 6.773 0.844 -0.560 H062 YSB 50 YSB H061 H13 H 0 0 N N N N N N -24.916 -14.507 -23.809 7.113 0.547 1.162 H061 YSB 51 YSB H241 H14 H 0 0 N N N N N N -19.593 -13.768 -31.916 -2.884 0.243 -2.569 H241 YSB 52 YSB H251 H15 H 0 0 N N N N N N -18.550 -13.998 -34.305 -5.149 1.086 -2.115 H251 YSB 53 YSB H291 H16 H 0 0 N N N N N N -17.458 -10.020 -31.478 -2.044 0.278 1.636 H291 YSB 54 YSB H301 H17 H 0 0 N N N N N N -16.804 -13.403 -35.832 -6.246 2.289 1.174 H301 YSB 55 YSB H302 H18 H 0 0 N N N N N N -15.844 -11.915 -35.530 -6.593 2.272 -0.572 H302 YSB 56 YSB H321 H19 H 0 0 N N N N N N -18.644 -9.754 -35.174 -9.745 0.372 0.982 H321 YSB 57 YSB H322 H20 H 0 0 N N N N N N -17.181 -9.219 -36.068 -8.874 1.747 1.702 H322 YSB 58 YSB H323 H21 H 0 0 N N N N N N -18.788 -9.186 -36.872 -9.221 1.729 -0.043 H323 YSB 59 YSB H361 H22 H 0 0 N N N N N N -18.347 -14.632 -29.933 -1.931 -2.657 0.719 H361 YSB 60 YSB H371 H23 H 0 0 N N N N N N -18.657 -15.845 -27.766 -0.536 -4.620 1.130 H371 YSB 61 YSB H381 H24 H 0 0 N N N N N N -19.709 -14.710 -25.805 1.776 -4.701 0.298 H381 YSB 62 YSB H1 H25 H 0 1 N N N N N N -28.578 -11.843 -23.438 8.175 1.962 0.808 H1 YSB 63 YSB H012 H26 H 0 0 N N N N N N -29.332 -12.687 -24.614 8.538 3.585 0.818 H012 YSB 64 YSB H171 H28 H 0 0 N N N N N N -20.410 -10.190 -27.768 2.017 -0.220 -1.911 H171 YSB 65 YSB H2 H29 H 0 1 N N N N N N -20.262 -7.492 -30.004 0.846 3.106 -3.053 H2 YSB 66 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YSB O34 S31 DOUB N N 1 YSB O33 S31 DOUB N N 2 YSB S31 C32 SING N N 3 YSB S31 C30 SING N N 4 YSB C30 C26 SING N N 5 YSB C26 C25 DOUB Y N 6 YSB C26 C27 SING Y N 7 YSB F28 C27 SING N N 8 YSB C25 C24 SING Y N 9 YSB C27 C29 DOUB Y N 10 YSB C24 C23 DOUB Y N 11 YSB C29 C23 SING Y N 12 YSB C23 C22 SING N N 13 YSB O21 C19 DOUB N N 14 YSB C19 C18 SING N N 15 YSB C19 O20 SING N N 16 YSB C22 C18 DOUB Y N 17 YSB C22 C35 SING Y N 18 YSB C18 N17 SING Y N 19 YSB C35 C36 DOUB Y N 20 YSB C35 C16 SING Y N 21 YSB C36 C37 SING Y N 22 YSB N17 C16 SING Y N 23 YSB C16 C15 DOUB Y N 24 YSB C37 C38 DOUB Y N 25 YSB O10 C09 DOUB N N 26 YSB C15 C38 SING Y N 27 YSB C15 C13 SING N N 28 YSB C09 O08 SING N N 29 YSB C09 N12 SING N N 30 YSB O08 C07 SING N N 31 YSB C13 N12 SING N N 32 YSB C13 C14 SING N N 33 YSB N12 C11 SING N N 34 YSB C07 C11 DOUB N N 35 YSB C07 C06 SING N N 36 YSB C06 C05 SING N N 37 YSB C04 C02 SING N N 38 YSB C04 C03 SING N N 39 YSB C05 C02 SING N N 40 YSB C02 N01 SING N N 41 YSB C02 C03 SING N N 42 YSB C13 H131 SING N N 43 YSB C14 H142 SING N N 44 YSB C14 H141 SING N N 45 YSB C14 H143 SING N N 46 YSB C11 H111 SING N N 47 YSB C03 H032 SING N N 48 YSB C03 H031 SING N N 49 YSB C04 H041 SING N N 50 YSB C04 H042 SING N N 51 YSB C05 H051 SING N N 52 YSB C05 H052 SING N N 53 YSB C06 H062 SING N N 54 YSB C06 H061 SING N N 55 YSB C24 H241 SING N N 56 YSB C25 H251 SING N N 57 YSB C29 H291 SING N N 58 YSB C30 H301 SING N N 59 YSB C30 H302 SING N N 60 YSB C32 H321 SING N N 61 YSB C32 H322 SING N N 62 YSB C32 H323 SING N N 63 YSB C36 H361 SING N N 64 YSB C37 H371 SING N N 65 YSB C38 H381 SING N N 66 YSB N01 H1 SING N N 67 YSB N01 H012 SING N N 68 YSB N17 H171 SING N N 69 YSB O20 H2 SING N N 70 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YSB InChI InChI 1.06 "InChI=1S/C27H28FN3O6S/c1-15(31-13-18(37-26(31)34)8-9-27(29)10-11-27)19-4-3-5-20-22(24(25(32)33)30-23(19)20)16-6-7-17(21(28)12-16)14-38(2,35)36/h3-7,12-13,15,30H,8-11,14,29H2,1-2H3,(H,32,33)/t15-/m0/s1" YSB InChIKey InChI 1.06 NFKRMUKGVPOZHM-HNNXBMFYSA-N YSB SMILES_CANONICAL CACTVS 3.385 "C[C@H](N1C=C(CCC2(N)CC2)OC1=O)c3cccc4c3[nH]c(C(O)=O)c4c5ccc(C[S](C)(=O)=O)c(F)c5" YSB SMILES CACTVS 3.385 "C[CH](N1C=C(CCC2(N)CC2)OC1=O)c3cccc4c3[nH]c(C(O)=O)c4c5ccc(C[S](C)(=O)=O)c(F)c5" YSB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](c1cccc2c1[nH]c(c2c3ccc(c(c3)F)CS(=O)(=O)C)C(=O)O)N4C=C(OC4=O)CCC5(CC5)N" YSB SMILES "OpenEye OEToolkits" 2.0.7 "CC(c1cccc2c1[nH]c(c2c3ccc(c(c3)F)CS(=O)(=O)C)C(=O)O)N4C=C(OC4=O)CCC5(CC5)N" # _pdbx_chem_comp_identifier.comp_id YSB _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "7-[(1~{S})-1-[5-[2-(1-azanylcyclopropyl)ethyl]-2-oxidanylidene-1,3-oxazol-3-yl]ethyl]-3-[3-fluoranyl-4-(methylsulfonylmethyl)phenyl]-1~{H}-indole-2-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YSB "Create component" 2023-06-20 PDBE YSB "Initial release" 2024-07-10 RCSB #