data_YSD # _chem_comp.id YSD _chem_comp.name "(1R,3R,7E,17beta)-17-[(2R)-5-ethyl-5-hydroxyheptan-2-yl]-2-methylidene-9,10-secoestra-5,7-diene-1,3-diol" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H46 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-04-23 _chem_comp.pdbx_modified_date 2012-05-18 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 430.663 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YSD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3VRV _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YSD CAB CAB C 0 1 N N N -9.642 22.530 -6.978 7.113 3.189 1.002 CAB YSD 1 YSD CAK CAK C 0 1 N N N -10.165 21.129 -7.502 5.914 2.359 0.537 CAK YSD 2 YSD CBD CBD C 0 1 N N N -11.506 20.810 -6.837 6.412 1.104 -0.183 CBD YSD 3 YSD CAL CAL C 0 1 N N N -11.349 20.530 -5.335 7.353 1.507 -1.320 CAL YSD 4 YSD CAC CAC C 0 1 N N N -10.279 19.485 -5.074 7.840 0.253 -2.048 CAC YSD 5 YSD OAH OAH O 0 1 N N N -12.088 19.618 -7.405 7.113 0.270 0.742 OAH YSD 6 YSD CAS CAS C 0 1 N N N -12.391 22.050 -7.057 5.218 0.338 -0.756 CAS YSD 7 YSD CAP CAP C 0 1 N N N -13.646 22.069 -6.188 4.278 -0.068 0.381 CAP YSD 8 YSD CAY CAY C 0 1 N N R -14.729 22.854 -6.963 3.027 -0.727 -0.202 CAY YSD 9 YSD CAD CAD C 0 1 N N N -15.441 21.970 -7.993 3.415 -2.036 -0.893 CAD YSD 10 YSD CBC CBC C 0 1 N N R -15.793 23.615 -6.142 2.033 -1.020 0.923 CBC YSD 11 YSD CAQ CAQ C 0 1 N N N -16.342 22.842 -4.919 1.541 0.304 1.566 CAQ YSD 12 YSD CAO CAO C 0 1 N N N -16.951 23.915 -4.003 -0.008 0.304 1.436 CAO YSD 13 YSD CBB CBB C 0 1 N N S -16.791 25.204 -4.770 -0.338 -1.187 1.329 CBB YSD 14 YSD CBE CBE C 0 1 N N R -15.459 25.022 -5.528 0.780 -1.676 0.365 CBE YSD 15 YSD CAE CAE C 0 1 N N N -14.236 25.006 -4.588 0.508 -1.132 -1.039 CAE YSD 16 YSD CAR CAR C 0 1 N N N -15.354 26.189 -6.566 0.719 -3.185 0.323 CAR YSD 17 YSD CAM CAM C 0 1 N N N -15.528 27.599 -5.911 -0.591 -3.577 -0.381 CAM YSD 18 YSD CAN CAN C 0 1 N N N -16.720 27.726 -4.917 -1.814 -3.023 0.347 CAN YSD 19 YSD CAX CAX C 0 1 N N N -16.752 26.486 -3.978 -1.631 -1.544 0.658 CAX YSD 20 YSD CAJ CAJ C 0 1 N N N -16.871 26.612 -2.558 -2.552 -0.634 0.357 CAJ YSD 21 YSD CAI CAI C 0 1 N N N -16.738 27.914 -1.953 -3.802 -1.043 -0.301 CAI YSD 22 YSD CAW CAW C 0 1 N N N -16.551 28.034 -0.550 -4.676 -0.124 -0.698 CAW YSD 23 YSD CAU CAU C 0 1 N N N -16.321 26.780 0.320 -4.336 1.347 -0.613 CAU YSD 24 YSD CAT CAT C 0 1 N N N -16.427 29.432 0.044 -6.024 -0.530 -1.247 CAT YSD 25 YSD CAZ CAZ C 0 1 N N R -17.052 29.585 1.420 -7.117 0.173 -0.432 CAZ YSD 26 YSD OAF OAF O 0 1 N N N -18.478 29.540 1.327 -7.172 -0.389 0.881 OAF YSD 27 YSD CAV CAV C 0 1 N N N -16.594 28.409 2.287 -6.780 1.644 -0.342 CAV YSD 28 YSD CAA CAA C 0 1 N N N -15.895 28.615 3.461 -7.641 2.550 -0.732 CAA YSD 29 YSD CBA CBA C 0 1 N N R -16.960 27.020 1.735 -5.425 2.054 0.204 CBA YSD 30 YSD OAG OAG O 0 1 N N N -16.506 26.109 2.632 -5.268 3.470 0.089 OAG YSD 31 YSD H1 H1 H 0 1 N N N -8.678 22.763 -7.454 7.711 3.478 0.139 H1 YSD 32 YSD H2 H2 H 0 1 N N N -10.374 23.312 -7.230 6.758 4.083 1.515 H2 YSD 33 YSD H3 H3 H 0 1 N N N -9.512 22.488 -5.887 7.722 2.596 1.684 H3 YSD 34 YSD H4 H4 H 0 1 N N N -10.296 21.170 -8.593 5.316 2.069 1.401 H4 YSD 35 YSD H5 H5 H 0 1 N N N -9.434 20.346 -7.250 5.305 2.952 -0.145 H5 YSD 36 YSD H6 H6 H 0 1 N N N -11.069 21.463 -4.824 6.821 2.151 -2.021 H6 YSD 37 YSD H7 H7 H 0 1 N N N -12.308 20.167 -4.937 8.208 2.045 -0.910 H7 YSD 38 YSD H8 H8 H 0 1 N N N -10.193 19.310 -3.991 8.583 0.532 -2.795 H8 YSD 39 YSD H9 H9 H 0 1 N N N -10.553 18.546 -5.577 8.288 -0.433 -1.329 H9 YSD 40 YSD H10 H10 H 0 1 N N N -9.315 19.842 -5.465 6.997 -0.234 -2.538 H10 YSD 41 YSD H11 H11 H 0 1 N N N -12.918 19.437 -6.980 6.576 -0.024 1.491 H11 YSD 42 YSD H12 H12 H 0 1 N N N -11.796 22.946 -6.828 4.682 0.975 -1.461 H12 YSD 43 YSD H13 H13 H 0 1 N N N -12.699 22.074 -8.113 5.572 -0.555 -1.271 H13 YSD 44 YSD H14 H14 H 0 1 N N N -13.989 21.041 -5.999 4.787 -0.772 1.039 H14 YSD 45 YSD H15 H15 H 0 1 N N N -13.433 22.566 -5.230 3.991 0.818 0.948 H15 YSD 46 YSD H16 H16 H 0 1 N N N -14.190 23.619 -7.541 2.567 -0.056 -0.928 H16 YSD 47 YSD H17 H17 H 0 1 N N N -16.202 22.563 -8.522 4.123 -1.827 -1.695 H17 YSD 48 YSD H18 H18 H 0 1 N N N -14.707 21.586 -8.717 3.875 -2.707 -0.168 H18 YSD 49 YSD H19 H19 H 0 1 N N N -15.925 21.126 -7.480 2.523 -2.506 -1.308 H19 YSD 50 YSD H20 H20 H 0 1 N N N -16.648 23.773 -6.816 2.492 -1.660 1.676 H20 YSD 51 YSD H21 H21 H 0 1 N N N -17.111 22.121 -5.232 1.829 0.340 2.617 H21 YSD 52 YSD H22 H22 H 0 1 N N N -15.529 22.310 -4.403 1.962 1.157 1.033 H22 YSD 53 YSD H23 H23 H 0 1 N N N -18.014 23.706 -3.813 -0.470 0.739 2.322 H23 YSD 54 YSD H24 H24 H 0 1 N N N -16.410 23.962 -3.047 -0.320 0.837 0.538 H24 YSD 55 YSD H25 H25 H 0 1 N N N -17.601 25.274 -5.511 -0.263 -1.670 2.303 H25 YSD 56 YSD H26 H26 H 0 1 N N N -14.335 24.178 -3.870 1.285 -1.478 -1.720 H26 YSD 57 YSD H27 H27 H 0 1 N N N -13.320 24.869 -5.181 -0.463 -1.487 -1.385 H27 YSD 58 YSD H28 H28 H 0 1 N N N -14.181 25.959 -4.042 0.507 -0.042 -1.012 H28 YSD 59 YSD H29 H29 H 0 1 N N N -16.138 26.055 -7.326 1.570 -3.575 -0.236 H29 YSD 60 YSD H30 H30 H 0 1 N N N -14.366 26.144 -7.047 0.727 -3.584 1.337 H30 YSD 61 YSD H31 H31 H 0 1 N N N -14.603 27.837 -5.365 -0.577 -3.188 -1.399 H31 YSD 62 YSD H32 H32 H 0 1 N N N -15.677 28.333 -6.717 -0.663 -4.664 -0.419 H32 YSD 63 YSD H33 H33 H 0 1 N N N -16.598 28.638 -4.314 -2.695 -3.151 -0.281 H33 YSD 64 YSD H34 H34 H 0 1 N N N -17.663 27.782 -5.481 -1.955 -3.570 1.279 H34 YSD 65 YSD H35 H35 H 0 1 N N N -17.058 25.742 -1.946 -2.382 0.405 0.595 H35 YSD 66 YSD H36 H36 H 0 1 N N N -16.781 28.801 -2.568 -4.010 -2.091 -0.462 H36 YSD 67 YSD H37 H37 H 0 1 N N N -16.794 25.908 -0.156 -3.371 1.472 -0.121 H37 YSD 68 YSD H38 H38 H 0 1 N N N -15.242 26.598 0.428 -4.297 1.772 -1.616 H38 YSD 69 YSD H39 H39 H 0 1 N N N -15.358 29.679 0.122 -6.098 -0.231 -2.293 H39 YSD 70 YSD H40 H40 H 0 1 N N N -16.919 30.141 -0.638 -6.143 -1.610 -1.164 H40 YSD 71 YSD H41 H41 H 0 1 N N N -16.717 30.529 1.875 -8.080 0.048 -0.927 H41 YSD 72 YSD H42 H42 H 0 1 N N N -18.856 29.637 2.193 -7.843 0.010 1.451 H42 YSD 73 YSD H44 H44 H 0 1 N N N -15.571 27.771 4.052 -8.602 2.249 -1.123 H44 YSD 74 YSD H45 H45 H 0 1 N N N -15.673 29.620 3.788 -7.391 3.599 -0.663 H45 YSD 75 YSD H47 H47 H 0 1 N N N -18.054 26.963 1.631 -5.348 1.758 1.250 H47 YSD 76 YSD H48 H48 H 0 1 N N N -16.904 26.272 3.479 -5.925 3.980 0.582 H48 YSD 77 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YSD CAD CAY SING N N 1 YSD CAK CAB SING N N 2 YSD CAK CBD SING N N 3 YSD OAH CBD SING N N 4 YSD CAS CBD SING N N 5 YSD CAS CAP SING N N 6 YSD CAY CAP SING N N 7 YSD CAY CBC SING N N 8 YSD CBD CAL SING N N 9 YSD CAR CAM SING N N 10 YSD CAR CBE SING N N 11 YSD CBC CBE SING N N 12 YSD CBC CAQ SING N N 13 YSD CAM CAN SING N N 14 YSD CBE CBB SING N N 15 YSD CBE CAE SING N N 16 YSD CAL CAC SING N N 17 YSD CAQ CAO SING N N 18 YSD CAN CAX SING N N 19 YSD CBB CAO SING N N 20 YSD CBB CAX SING N N 21 YSD CAX CAJ DOUB N E 22 YSD CAJ CAI SING N N 23 YSD CAI CAW DOUB N N 24 YSD CAW CAT SING N N 25 YSD CAW CAU SING N N 26 YSD CAT CAZ SING N N 27 YSD CAU CBA SING N N 28 YSD OAF CAZ SING N N 29 YSD CAZ CAV SING N N 30 YSD CBA CAV SING N N 31 YSD CBA OAG SING N N 32 YSD CAV CAA DOUB N N 33 YSD CAB H1 SING N N 34 YSD CAB H2 SING N N 35 YSD CAB H3 SING N N 36 YSD CAK H4 SING N N 37 YSD CAK H5 SING N N 38 YSD CAL H6 SING N N 39 YSD CAL H7 SING N N 40 YSD CAC H8 SING N N 41 YSD CAC H9 SING N N 42 YSD CAC H10 SING N N 43 YSD OAH H11 SING N N 44 YSD CAS H12 SING N N 45 YSD CAS H13 SING N N 46 YSD CAP H14 SING N N 47 YSD CAP H15 SING N N 48 YSD CAY H16 SING N N 49 YSD CAD H17 SING N N 50 YSD CAD H18 SING N N 51 YSD CAD H19 SING N N 52 YSD CBC H20 SING N N 53 YSD CAQ H21 SING N N 54 YSD CAQ H22 SING N N 55 YSD CAO H23 SING N N 56 YSD CAO H24 SING N N 57 YSD CBB H25 SING N N 58 YSD CAE H26 SING N N 59 YSD CAE H27 SING N N 60 YSD CAE H28 SING N N 61 YSD CAR H29 SING N N 62 YSD CAR H30 SING N N 63 YSD CAM H31 SING N N 64 YSD CAM H32 SING N N 65 YSD CAN H33 SING N N 66 YSD CAN H34 SING N N 67 YSD CAJ H35 SING N N 68 YSD CAI H36 SING N N 69 YSD CAU H37 SING N N 70 YSD CAU H38 SING N N 71 YSD CAT H39 SING N N 72 YSD CAT H40 SING N N 73 YSD CAZ H41 SING N N 74 YSD OAF H42 SING N N 75 YSD CAA H44 SING N N 76 YSD CAA H45 SING N N 77 YSD CBA H47 SING N N 78 YSD OAG H48 SING N N 79 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YSD SMILES ACDLabs 12.01 "OC3C(=C)\C(O)C/C(=C\C=C1/CCCC2(C)C(C(C)CCC(O)(CC)CC)CCC12)C3" YSD InChI InChI 1.03 "InChI=1S/C28H46O3/c1-6-28(31,7-2)16-14-19(3)23-12-13-24-22(9-8-15-27(23,24)5)11-10-21-17-25(29)20(4)26(30)18-21/h10-11,19,23-26,29-31H,4,6-9,12-18H2,1-3,5H3/b22-11+/t19-,23-,24+,25-,26-,27-/m1/s1" YSD InChIKey InChI 1.03 CCJKDZZJQKPBID-IHLVXOQFSA-N YSD SMILES_CANONICAL CACTVS 3.370 "CCC(O)(CC)CC[C@@H](C)[C@H]1CC[C@H]2\C(CCC[C@]12C)=C\C=C3C[C@@H](O)C(=C)[C@H](O)C3" YSD SMILES CACTVS 3.370 "CCC(O)(CC)CC[CH](C)[CH]1CC[CH]2C(CCC[C]12C)=CC=C3C[CH](O)C(=C)[CH](O)C3" YSD SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CCC(CC)(CC[C@@H](C)[C@H]1CC[C@@H]\2[C@@]1(CCC/C2=C\C=C3C[C@H](C(=C)[C@@H](C3)O)O)C)O" YSD SMILES "OpenEye OEToolkits" 1.7.6 "CCC(CC)(CCC(C)C1CCC2C1(CCCC2=CC=C3CC(C(=C)C(C3)O)O)C)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YSD "SYSTEMATIC NAME" ACDLabs 12.01 "(1R,3R,7E,17beta)-17-[(2R)-5-ethyl-5-hydroxyheptan-2-yl]-2-methylidene-9,10-secoestra-5,7-diene-1,3-diol" YSD "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(1R,3R)-5-[(2E)-2-[(1R,3aS,7aR)-1-[(2R)-5-ethyl-5-oxidanyl-heptan-2-yl]-7a-methyl-2,3,3a,5,6,7-hexahydro-1H-inden-4-ylidene]ethylidene]-2-methylidene-cyclohexane-1,3-diol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YSD "Create component" 2012-04-23 PDBJ #