data_YSG # _chem_comp.id YSG _chem_comp.name "5-[3-(3-chloro-5-propoxyphenyl)-2-oxo-2H-[1,3'-bipyridin]-5-yl]pyrimidine-2,4(1H,3H)-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H19 Cl N4 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-03-30 _chem_comp.pdbx_modified_date 2021-06-25 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 450.874 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YSG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7M8M _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YSG N1 N1 N 0 1 N N N -24.435 -4.108 -22.190 -4.294 -3.257 1.436 N1 YSG 1 YSG C2 C1 C 0 1 N N N -21.778 -4.426 -27.708 0.128 0.113 -0.251 C2 YSG 2 YSG N3 N2 N 0 1 N N N -20.222 -4.899 -25.970 -1.535 1.832 -0.147 N3 YSG 3 YSG C4 C2 C 0 1 Y N N -22.943 -3.121 -29.500 1.969 -1.003 -1.507 C4 YSG 4 YSG C5 C3 C 0 1 Y N N -23.237 -2.831 -30.830 3.297 -1.363 -1.638 C5 YSG 5 YSG C6 C4 C 0 1 Y N N -22.669 -3.578 -31.845 4.213 -1.008 -0.663 C6 YSG 6 YSG C8 C5 C 0 1 N N N -20.037 -5.915 -32.489 6.059 -0.352 1.198 C8 YSG 7 YSG C1 C6 C 0 1 N N N -20.481 -4.681 -27.276 -0.242 1.479 -0.269 C1 YSG 8 YSG C10 C7 C 0 1 N N N -19.098 -5.318 -34.711 8.370 -0.315 2.146 C10 YSG 9 YSG C11 C8 C 0 1 Y N N -21.504 -4.919 -30.219 2.473 0.073 0.592 C11 YSG 10 YSG C12 C9 C 0 1 N N N -22.799 -4.370 -26.761 -0.853 -0.852 -0.106 C12 YSG 11 YSG C13 C10 C 0 1 N N N -22.504 -4.573 -25.418 -2.197 -0.445 0.018 C13 YSG 12 YSG C14 C11 C 0 1 N N N -23.606 -4.560 -24.356 -3.271 -1.457 0.174 C14 YSG 13 YSG C15 C12 C 0 1 N N N -23.427 -4.065 -23.067 -3.298 -2.353 1.338 C15 YSG 14 YSG C16 C13 C 0 1 N N N -24.844 -5.108 -24.673 -4.256 -1.579 -0.759 C16 YSG 15 YSG C17 C14 C 0 1 N N N -25.612 -4.632 -22.526 -5.237 -3.335 0.481 C17 YSG 16 YSG C18 C15 C 0 1 N N N -21.195 -4.846 -25.048 -2.508 0.895 -0.005 C18 YSG 17 YSG C19 C16 C 0 1 Y N N -18.863 -5.139 -25.508 -1.883 3.189 -0.167 C19 YSG 18 YSG C20 C17 C 0 1 Y N N -18.415 -6.377 -25.078 -2.240 3.809 -1.362 C20 YSG 19 YSG C21 C18 C 0 1 Y N N -17.095 -6.495 -24.648 -2.576 5.152 -1.332 C21 YSG 20 YSG C22 C19 C 0 1 Y N N -16.261 -5.379 -24.648 -2.548 5.828 -0.125 C22 YSG 21 YSG C23 C20 C 0 1 Y N N -17.994 -4.052 -25.485 -1.884 3.933 1.005 C23 YSG 22 YSG C3 C21 C 0 1 Y N N -22.077 -4.167 -29.187 1.551 -0.280 -0.391 C3 YSG 23 YSG C7 C22 C 0 1 Y N N -21.803 -4.612 -31.550 3.803 -0.288 0.451 C7 YSG 24 YSG C9 C23 C 0 1 N N N -19.589 -6.467 -33.839 6.921 0.124 2.369 C9 YSG 25 YSG N2 N3 N 0 1 N N N -25.822 -5.129 -23.754 -5.229 -2.524 -0.590 N2 YSG 26 YSG N4 N4 N 0 1 Y N N -16.729 -4.193 -25.071 -2.206 5.211 0.989 N4 YSG 27 YSG O1 O1 O 0 1 N N N -19.458 -4.743 -28.220 0.613 2.339 -0.395 O1 YSG 28 YSG O2 O2 O 0 1 N N N -21.289 -5.321 -32.648 4.706 0.058 1.406 O2 YSG 29 YSG O3 O3 O 0 1 N N N -22.231 -3.505 -22.642 -2.438 -2.280 2.197 O3 YSG 30 YSG O4 O4 O 0 1 N N N -26.624 -4.654 -21.566 -6.122 -4.162 0.590 O4 YSG 31 YSG CL1 CL1 CL 0 0 N N N -24.351 -1.522 -31.298 3.817 -2.264 -3.027 CL1 YSG 32 YSG H12 H1 H 0 1 N N N -24.303 -3.742 -21.269 -4.328 -3.857 2.198 H12 YSG 33 YSG H1 H2 H 0 1 N N N -23.387 -2.534 -28.710 1.258 -1.278 -2.271 H1 YSG 34 YSG H2 H3 H 0 1 N N N -22.904 -3.352 -32.875 5.249 -1.292 -0.769 H2 YSG 35 YSG H3 H4 H 0 1 N N N -20.105 -6.734 -31.757 6.432 0.083 0.271 H3 YSG 36 YSG H4 H5 H 0 1 N N N -19.313 -5.166 -32.135 6.103 -1.439 1.133 H4 YSG 37 YSG H8 H6 H 0 1 N N N -18.773 -5.710 -35.686 8.414 -1.402 2.082 H8 YSG 38 YSG H7 H7 H 0 1 N N N -19.914 -4.596 -34.859 8.743 0.120 1.219 H7 YSG 39 YSG H9 H8 H 0 1 N N N -18.252 -4.818 -34.217 8.985 0.025 2.980 H9 YSG 40 YSG H10 H9 H 0 1 N N N -20.833 -5.733 -29.988 2.154 0.634 1.458 H10 YSG 41 YSG H11 H10 H 0 1 N N N -23.815 -4.170 -27.069 -0.594 -1.900 -0.090 H11 YSG 42 YSG H13 H11 H 0 1 N N N -25.018 -5.516 -25.658 -4.266 -0.937 -1.627 H13 YSG 43 YSG H15 H12 H 0 1 N N N -20.957 -5.017 -24.009 -3.538 1.205 0.091 H15 YSG 44 YSG H16 H13 H 0 1 N N N -19.074 -7.232 -25.076 -2.253 3.257 -2.290 H16 YSG 45 YSG H17 H14 H 0 1 N N N -16.719 -7.451 -24.315 -2.857 5.666 -2.239 H17 YSG 46 YSG H18 H15 H 0 1 N N N -15.240 -5.467 -24.308 -2.810 6.875 -0.096 H18 YSG 47 YSG H19 H16 H 0 1 N N N -18.345 -3.082 -25.805 -1.613 3.462 1.938 H19 YSG 48 YSG H5 H17 H 0 1 N N N -20.436 -6.967 -34.332 6.877 1.212 2.434 H5 YSG 49 YSG H6 H18 H 0 1 N N N -18.773 -7.190 -33.689 6.548 -0.310 3.296 H6 YSG 50 YSG H14 H19 H 0 1 N N N -26.713 -5.518 -23.986 -5.930 -2.609 -1.255 H14 YSG 51 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YSG C10 C9 SING N N 1 YSG C9 C8 SING N N 2 YSG O2 C8 SING N N 3 YSG O2 C7 SING N N 4 YSG C6 C7 DOUB Y N 5 YSG C6 C5 SING Y N 6 YSG C7 C11 SING Y N 7 YSG CL1 C5 SING N N 8 YSG C5 C4 DOUB Y N 9 YSG C11 C3 DOUB Y N 10 YSG C4 C3 SING Y N 11 YSG C3 C2 SING N N 12 YSG O1 C1 DOUB N N 13 YSG C2 C1 SING N N 14 YSG C2 C12 DOUB N N 15 YSG C1 N3 SING N N 16 YSG C12 C13 SING N N 17 YSG N3 C19 SING N N 18 YSG N3 C18 SING N N 19 YSG C19 C23 DOUB Y N 20 YSG C19 C20 SING Y N 21 YSG C23 N4 SING Y N 22 YSG C13 C18 DOUB N N 23 YSG C13 C14 SING N N 24 YSG C20 C21 DOUB Y N 25 YSG N4 C22 DOUB Y N 26 YSG C16 C14 DOUB N N 27 YSG C16 N2 SING N N 28 YSG C22 C21 SING Y N 29 YSG C14 C15 SING N N 30 YSG N2 C17 SING N N 31 YSG C15 O3 DOUB N N 32 YSG C15 N1 SING N N 33 YSG C17 N1 SING N N 34 YSG C17 O4 DOUB N N 35 YSG N1 H12 SING N N 36 YSG C4 H1 SING N N 37 YSG C6 H2 SING N N 38 YSG C8 H3 SING N N 39 YSG C8 H4 SING N N 40 YSG C10 H8 SING N N 41 YSG C10 H7 SING N N 42 YSG C10 H9 SING N N 43 YSG C11 H10 SING N N 44 YSG C12 H11 SING N N 45 YSG C16 H13 SING N N 46 YSG C18 H15 SING N N 47 YSG C20 H16 SING N N 48 YSG C21 H17 SING N N 49 YSG C22 H18 SING N N 50 YSG C23 H19 SING N N 51 YSG C9 H5 SING N N 52 YSG C9 H6 SING N N 53 YSG N2 H14 SING N N 54 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YSG SMILES ACDLabs 12.01 "O=C1NC=C(C2=CN(c3cnccc3)C(=O)C(=C2)c2cc(OCCC)cc(Cl)c2)C(=O)N1" YSG InChI InChI 1.03 "InChI=1S/C23H19ClN4O4/c1-2-6-32-18-8-14(7-16(24)10-18)19-9-15(20-12-26-23(31)27-21(20)29)13-28(22(19)30)17-4-3-5-25-11-17/h3-5,7-13H,2,6H2,1H3,(H2,26,27,29,31)" YSG InChIKey InChI 1.03 GJCBTWHGKCNYAB-UHFFFAOYSA-N YSG SMILES_CANONICAL CACTVS 3.385 "CCCOc1cc(Cl)cc(c1)C2=CC(=CN(C2=O)c3cccnc3)C4=CNC(=O)NC4=O" YSG SMILES CACTVS 3.385 "CCCOc1cc(Cl)cc(c1)C2=CC(=CN(C2=O)c3cccnc3)C4=CNC(=O)NC4=O" YSG SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCOc1cc(cc(c1)Cl)C2=CC(=CN(C2=O)c3cccnc3)C4=CNC(=O)NC4=O" YSG SMILES "OpenEye OEToolkits" 2.0.7 "CCCOc1cc(cc(c1)Cl)C2=CC(=CN(C2=O)c3cccnc3)C4=CNC(=O)NC4=O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YSG "SYSTEMATIC NAME" ACDLabs 12.01 "5-[3-(3-chloro-5-propoxyphenyl)-2-oxo-2H-[1,3'-bipyridin]-5-yl]pyrimidine-2,4(1H,3H)-dione" YSG "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "5-[5-(3-chloranyl-5-propoxy-phenyl)-6-oxidanylidene-1-pyridin-3-yl-pyridin-3-yl]-1~{H}-pyrimidine-2,4-dione" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YSG "Create component" 2021-03-30 RCSB YSG "Initial release" 2021-06-30 RCSB ##