data_YSI
#
_chem_comp.id YSI
_chem_comp.name "(3R)-3-cyclopentyl-3-[(4M)-4-{5-methyl-2-[(1-methyl-1H-pyrazol-4-yl)amino]pyrimidin-4-yl}-1H-pyrazol-1-yl]propanenitrile"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C20 H24 N8"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2023-02-17
_chem_comp.pdbx_modified_date 2023-06-16
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 376.458
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code YSI
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8G6Z
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
YSI C10 C1 C 0 1 Y N N -13.739 -17.145 23.616 0.902 0.838 -0.660 C10 YSI 1
YSI C15 C2 C 0 1 N N N -10.331 -20.015 24.693 4.695 -0.378 1.066 C15 YSI 2
YSI C14 C3 C 0 1 N N N -9.609 -16.626 23.105 3.098 -2.803 -1.377 C14 YSI 3
YSI C13 C4 C 0 1 N N N -9.455 -18.050 23.412 3.594 -2.303 -0.084 C13 YSI 4
YSI C12 C5 C 0 1 N N R -10.470 -18.523 24.444 4.065 -0.857 -0.243 C12 YSI 5
YSI C11 C6 C 0 1 Y N N -13.740 -18.470 23.140 1.745 1.618 -1.479 C11 YSI 6
YSI C8 C7 C 0 1 Y N N -18.081 -16.336 18.968 -5.793 -1.689 0.445 C8 YSI 7
YSI C9 C8 C 0 1 Y N N -14.788 -16.150 23.488 -0.546 1.055 -0.436 C9 YSI 8
YSI N1 N1 N 0 1 Y N N -16.777 -14.288 23.089 -3.187 1.427 -0.026 N1 YSI 9
YSI C1 C9 C 0 1 N N N -14.191 -15.045 25.692 -0.177 3.551 -0.555 C1 YSI 10
YSI C2 C10 C 0 1 Y N N -15.006 -15.142 24.426 -1.071 2.350 -0.384 C2 YSI 11
YSI C3 C11 C 0 1 Y N N -16.029 -14.252 24.198 -2.429 2.503 -0.173 C3 YSI 12
YSI C4 C12 C 0 1 Y N N -16.508 -15.276 22.219 -2.664 0.210 -0.085 C4 YSI 13
YSI C5 C13 C 0 1 Y N N -17.226 -16.276 20.058 -4.872 -0.705 0.281 C5 YSI 14
YSI C6 C14 C 0 1 Y N N -16.369 -17.362 19.912 -5.539 0.526 0.363 C6 YSI 15
YSI C7 C15 C 0 1 N N N -18.234 -17.928 16.988 -8.278 -1.780 0.832 C7 YSI 16
YSI N2 N2 N 0 1 N N N -17.261 -15.327 21.082 -3.493 -0.888 0.067 N2 YSI 17
YSI N3 N3 N 0 1 Y N N -16.640 -18.062 18.817 -6.810 0.293 0.568 N3 YSI 18
YSI N4 N4 N 0 1 Y N N -17.687 -17.403 18.232 -7.002 -1.093 0.619 N4 YSI 19
YSI N5 N5 N 0 1 Y N N -15.567 -16.213 22.395 -1.369 0.019 -0.285 N5 YSI 20
YSI N6 N6 N 0 1 Y N N -12.601 -19.104 23.376 2.947 1.110 -1.423 N6 YSI 21
YSI N7 N7 N 0 1 Y N N -11.818 -18.194 24.025 2.921 -0.004 -0.575 N7 YSI 22
YSI N8 N8 N 0 1 N N N -9.699 -15.510 22.848 2.715 -3.188 -2.375 N8 YSI 23
YSI C16 C16 C 0 1 N N N -11.224 -20.563 25.817 5.239 1.055 0.899 C16 YSI 24
YSI C17 C17 C 0 1 N N N -10.589 -21.898 26.168 6.543 1.067 1.734 C17 YSI 25
YSI C18 C18 C 0 1 N N N -9.086 -21.548 26.149 7.133 -0.340 1.466 C18 YSI 26
YSI C19 C19 C 0 1 N N N -8.906 -20.449 25.105 5.899 -1.266 1.427 C19 YSI 27
YSI C20 C20 C 0 1 Y N N -12.454 -17.000 24.157 1.664 -0.157 -0.117 C20 YSI 28
YSI H1 H1 H 0 1 N N N -10.590 -20.544 23.764 3.957 -0.406 1.868 H1 YSI 29
YSI H2 H2 H 0 1 N N N -9.592 -18.630 22.487 2.792 -2.345 0.653 H2 YSI 30
YSI H3 H3 H 0 1 N N N -8.442 -18.221 23.805 4.427 -2.922 0.249 H3 YSI 31
YSI H4 H4 H 0 1 N N N -10.257 -18.002 25.389 4.804 -0.801 -1.043 H4 YSI 32
YSI H5 H5 H 0 1 N N N -14.581 -18.922 22.635 1.448 2.484 -2.052 H5 YSI 33
YSI H6 H6 H 0 1 N N N -18.899 -15.665 18.749 -5.600 -2.751 0.435 H6 YSI 34
YSI H7 H7 H 0 1 N N N -13.318 -14.399 25.518 -0.123 3.816 -1.611 H7 YSI 35
YSI H8 H8 H 0 1 N N N -14.810 -14.617 26.494 -0.584 4.390 0.009 H8 YSI 36
YSI H9 H9 H 0 1 N N N -13.851 -16.049 25.987 0.822 3.316 -0.188 H9 YSI 37
YSI H10 H10 H 0 1 N N N -16.236 -13.496 24.941 -2.866 3.489 -0.128 H10 YSI 38
YSI H11 H11 H 0 1 N N N -15.578 -17.606 20.606 -5.081 1.500 0.272 H11 YSI 39
YSI H12 H12 H 0 1 N N N -17.681 -18.833 16.697 -8.757 -1.965 -0.129 H12 YSI 40
YSI H13 H13 H 0 1 N N N -19.296 -18.178 17.131 -8.101 -2.728 1.339 H13 YSI 41
YSI H14 H14 H 0 1 N N N -18.139 -17.170 16.197 -8.928 -1.156 1.447 H14 YSI 42
YSI H15 H15 H 0 1 N N N -17.925 -14.588 20.967 -3.123 -1.784 0.026 H15 YSI 43
YSI H16 H16 H 0 1 N N N -11.220 -19.887 26.685 5.455 1.261 -0.150 H16 YSI 44
YSI H17 H17 H 0 1 N N N -12.257 -20.701 25.464 4.528 1.782 1.292 H17 YSI 45
YSI H18 H18 H 0 1 N N N -10.907 -22.244 27.163 7.222 1.843 1.380 H18 YSI 46
YSI H19 H19 H 0 1 N N N -10.831 -22.666 25.418 6.323 1.202 2.793 H19 YSI 47
YSI H20 H20 H 0 1 N N N -8.494 -22.433 25.874 7.655 -0.360 0.509 H20 YSI 48
YSI H21 H21 H 0 1 N N N -8.768 -21.187 27.138 7.805 -0.632 2.273 H21 YSI 49
YSI H22 H22 H 0 1 N N N -8.357 -20.836 24.234 5.745 -1.725 2.404 H22 YSI 50
YSI H23 H23 H 0 1 N N N -8.357 -19.599 25.536 6.035 -2.037 0.669 H23 YSI 51
YSI H24 H24 H 0 1 N N N -12.044 -16.103 24.598 1.321 -0.927 0.558 H24 YSI 52
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
YSI C7 N4 SING N N 1
YSI N4 N3 SING Y N 2
YSI N4 C8 SING Y N 3
YSI N3 C6 DOUB Y N 4
YSI C8 C5 DOUB Y N 5
YSI C6 C5 SING Y N 6
YSI C5 N2 SING N N 7
YSI N2 C4 SING N N 8
YSI C4 N5 DOUB Y N 9
YSI C4 N1 SING Y N 10
YSI N5 C9 SING Y N 11
YSI N8 C14 TRIP N N 12
YSI N1 C3 DOUB Y N 13
YSI C14 C13 SING N N 14
YSI C11 N6 DOUB Y N 15
YSI C11 C10 SING Y N 16
YSI N6 N7 SING Y N 17
YSI C13 C12 SING N N 18
YSI C9 C10 SING N N 19
YSI C9 C2 DOUB Y N 20
YSI C10 C20 DOUB Y N 21
YSI N7 C20 SING Y N 22
YSI N7 C12 SING N N 23
YSI C3 C2 SING Y N 24
YSI C2 C1 SING N N 25
YSI C12 C15 SING N N 26
YSI C15 C19 SING N N 27
YSI C15 C16 SING N N 28
YSI C19 C18 SING N N 29
YSI C16 C17 SING N N 30
YSI C18 C17 SING N N 31
YSI C15 H1 SING N N 32
YSI C13 H2 SING N N 33
YSI C13 H3 SING N N 34
YSI C12 H4 SING N N 35
YSI C11 H5 SING N N 36
YSI C8 H6 SING N N 37
YSI C1 H7 SING N N 38
YSI C1 H8 SING N N 39
YSI C1 H9 SING N N 40
YSI C3 H10 SING N N 41
YSI C6 H11 SING N N 42
YSI C7 H12 SING N N 43
YSI C7 H13 SING N N 44
YSI C7 H14 SING N N 45
YSI N2 H15 SING N N 46
YSI C16 H16 SING N N 47
YSI C16 H17 SING N N 48
YSI C17 H18 SING N N 49
YSI C17 H19 SING N N 50
YSI C18 H20 SING N N 51
YSI C18 H21 SING N N 52
YSI C19 H22 SING N N 53
YSI C19 H23 SING N N 54
YSI C20 H24 SING N N 55
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
YSI SMILES ACDLabs 12.01 "Cn1cc(cn1)Nc1ncc(C)c(n1)c1cn(nc1)C(CC#N)C1CCCC1"
YSI InChI InChI 1.06 "InChI=1S/C20H24N8/c1-14-9-22-20(25-17-11-23-27(2)13-17)26-19(14)16-10-24-28(12-16)18(7-8-21)15-5-3-4-6-15/h9-13,15,18H,3-7H2,1-2H3,(H,22,25,26)/t18-/m1/s1"
YSI InChIKey InChI 1.06 FEQOESZUGZISHK-GOSISDBHSA-N
YSI SMILES_CANONICAL CACTVS 3.385 "Cn1cc(Nc2ncc(C)c(n2)c3cnn(c3)[C@H](CC#N)C4CCCC4)cn1"
YSI SMILES CACTVS 3.385 "Cn1cc(Nc2ncc(C)c(n2)c3cnn(c3)[CH](CC#N)C4CCCC4)cn1"
YSI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cnc(nc1c2cnn(c2)[C@H](CC#N)C3CCCC3)Nc4cnn(c4)C"
YSI SMILES "OpenEye OEToolkits" 2.0.7 "Cc1cnc(nc1c2cnn(c2)C(CC#N)C3CCCC3)Nc4cnn(c4)C"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
YSI "SYSTEMATIC NAME" ACDLabs 12.01 "(3R)-3-cyclopentyl-3-[(4M)-4-{5-methyl-2-[(1-methyl-1H-pyrazol-4-yl)amino]pyrimidin-4-yl}-1H-pyrazol-1-yl]propanenitrile"
YSI "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(3~{R})-3-cyclopentyl-3-[4-[5-methyl-2-[(1-methylpyrazol-4-yl)amino]pyrimidin-4-yl]pyrazol-1-yl]propanenitrile"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
YSI "Create component" 2023-02-17 RCSB
YSI "Initial release" 2023-06-21 RCSB
#